Array 1 140525-142078 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVQI01000020.1 Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536 contig00010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 140525 36 80.6 30 T...T.AC......G.G.G................. CAAAAGTAAATAATATGTCGGAAGTCACAG 140591 36 100.0 30 .................................... GTAAACCAGTGTTTTGAGTACGAACTGCTT 140657 36 100.0 30 .................................... AAATTGTACGGATTTACAGTTGACAGTCTA 140723 36 100.0 30 .................................... GTCGGCTTGTGCTATGCACAACATTTAACG 140789 36 100.0 30 .................................... ACCGCATCGGCGCTCAATCTTTTTTCAGCC 140855 36 100.0 30 .................................... GACGGTTGTCCCTAATCGTATATCGCCCCA 140921 36 100.0 30 .................................... ATGCGCTCTCAAAGATGTACGAGCTTGGCT 140987 36 100.0 30 .................................... GGCATTGAGGACGATATGTCGCCATTCATA 141053 36 100.0 30 .................................... GAGTAGTTTTAAATACTTGTTTCCAGATGA 141119 36 100.0 31 .................................... TGAGGTCGATATACTGTTTAAACAGCGCGAT 141186 36 100.0 30 .................................... CGTCAAAATACATATCGACACGTTTTCCCA 141252 36 100.0 30 .................................... ACGGACTTAGGGTAATACATTCTACCGTTG 141318 36 100.0 30 .................................... GTAATCCTTGCCATTGTACATACCTATGCA 141384 36 100.0 29 .................................... ATATTATAGCTATAAAAGATTGTGCAACG 141449 36 100.0 30 .................................... TGAAGTCAGGTGTCGTGGATTTAGCGGTAG 141515 36 100.0 30 .................................... AGATTTCTATAACAAAGCTACAGACAAAAC 141581 36 100.0 30 .................................... CAGACAGATTGTACTTTGCGAGCTCTTTTT 141647 36 100.0 30 .................................... ATAACGGGCATTTTATTACCTAACTCGTCC 141713 36 100.0 30 .................................... TATGATAAAAACGCTGTTATGCAGGCGTAT 141779 36 100.0 30 .................................... GGAGTAAAAAGTGACACGACAAGCGCAGAG 141845 36 100.0 30 .................................... ACAATCATCTTGCTAATATCCGCATCGCCG 141911 36 100.0 30 .................................... GTCGGCGTTTCGACATAGCCCGTGTTTTCA 141977 36 100.0 30 .................................... CCTTTTCGTTTTCTTAATCCATAAGTGCCT 142043 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 24 36 99.2 30 GTTGCAGGTTGACCAGAAAAATTAATCAGTTATAAT # Left flank : GGCGTTGATCTGGTATATCCTGTGGAACGGTGGAACTGAGCCGAAGCGCGCACGGTTGTTTTGTAATAATGTTATTCGTCATACGTTTGTCGGTGTTAATGTAGAAGGTGAGTGGTTTTACATAGATGCTGAAACGTGCTTACCTATGGGACATCCGTCGCTTCATGATTACAATTATCGTGAAAGCGATAACTGGGAGTTCACGGACTTTATTCTCAGTGCATATAAGATGCTCGGTAAGGGTGATGCTGTGTTGTGGAATAGGCTTCGAGAGCAGCAGGGAATACACGATGACTAATGTGGTACTGTTCACAGGCGACAATGAGTGCGAGATAGCGGCGATGCTTTTACGACAATGCTCCGATGAATGGATAGCTCATGCGCTTTTTGACGCTGCGGAGTTTACGATAGGTCGCGTGTACTATGTTGACGAGGACGTAGTTTAAGGTTGGTAGAAAAAAATTAACTATGGGTAATTCATGCGGTCGCTGTGTTACGGA # Right flank : TACGTCCGGCGTAAACCGTTACAATACAAAGAAATGGTTTGTGCCGGACGTGTTATTTTTAAACGAAAATCAGAATAAAAGAAACTGTTCCGGCTGCTTTTTTTGCCGTTTTTCGCCCGCATTATAACTGATGATATTGCCATACTGTCTGTCCGTTATCGTGATAATATCAACTTTTCCTTTTGTCGGCAAGTTGTCGTGTATCATTTTGTAATATTTTTCGCAAGCATCTTTTCCCGAAAATAATTTTGTATAAATCGAATATTGAACCATTGAAAAACCGTTATCCAGCAAAAATTTTCTGAATTCCGTAGCATCTTTTCGTTCTTTTTTTTCAATGACCGGCAGGTCAAATAATACCATCATCCACATAAGTTCATACTTATTCAAAATCAAATCGCGCATTTTCATCTCCGTCCCATAGGGGCAGTTCGATATCCGGTTTTTTATTTTCCAGCGCACGTGCATAGGCATTTGCCATATATTGCATACTTTGAAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGGTTGACCAGAAAAATTAATCAGTTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTGCAGGTTGACCAGAAAAATTAATCAGGTATAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.30,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 59945-56889 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVQI01000033.1 Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536 contig00041, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 59944 31 100.0 33 ............................... GATTAAAACTCGGACGAACAGCAAAATAACGAG 59880 31 100.0 35 ............................... CGCAGGTTGTACCTTTGTACAGTCGTAAACGGTTG 59814 31 100.0 33 ............................... CAAATCGTTATTAAAGCGTTTGTCAAACGCTTG 59750 31 100.0 32 ............................... ATCAAAAGCACCAACATTAAAATTACCGTTAA 59687 31 100.0 34 ............................... TTTTGTGACTGGTGGTCGTTCTGGTTCGGATAGT 59622 31 100.0 34 ............................... AACGTGCCGCAATAACTTACTGCCTTGTGTTGGC 59557 31 100.0 32 ............................... CACCCAAGTACACCTGTTGCACCTCTCCACGT 59494 31 100.0 33 ............................... TCCATACGTTAAAATAATAATTGCCCTCGTCTG 59430 31 100.0 32 ............................... CACCGCAGTCGTGCAACGTTATGCGCGTTACA 59367 31 100.0 33 ............................... AGACACCATATAATCATACGCATTGTCACTCAT 59303 31 100.0 33 ............................... TGGACGATGGGACGCCGTGTATACGGCTATCGG 59239 31 100.0 33 ............................... CGCGCAATGCAAAAATCAGTTGAGAAGCATTGC 59175 31 100.0 32 ............................... GTCAAGCATCCACTTTACCTCTAGTAGTAAAA 59112 31 100.0 35 ............................... ACCGAATGCACGGACACGTACATCATTGAGCACAA 59046 31 100.0 34 ............................... ATGTTAGATCACGTATAGTAGATACGCAAAGGAG 58981 31 100.0 34 ............................... AAGTCCGCGCGCGCATACGCGCTCAATCATTTTA 58916 31 100.0 33 ............................... TCCCCCAACCGAGCAAAAATAATACGAACTTTG 58852 31 100.0 32 ............................... TGGCGGGAAAGCTATGTACTACTGCGGAACAC 58789 31 100.0 32 ............................... TGTACAGATAATTATCTGGATTAAGTAATAAC 58726 31 100.0 34 ............................... CATACCTTTGCTCCTTATACATATATAATATAGC 58661 31 100.0 35 ............................... GATATGCACATTACCTATTGACATATCGACATCAA 58595 31 100.0 36 ............................... ATTACTTTTTGGTATCGATTTAATATGGGGTTTAGG 58528 31 100.0 33 ............................... ATAAACGCAGTGGATAAAAAGCAACGCGTGCGA 58464 31 100.0 32 ............................... TTATACGGGTAATTATCTGGATTAAGTAATAA 58401 31 100.0 33 ............................... AAGCTGCATGATTTTTTGAACCAGTGCATGAAC 58337 31 100.0 33 ............................... CGTATGCAAAAATATGTGTCAGCAATGGCAGGC 58273 31 100.0 35 ............................... ACCGAACCCTGTATTTACAGCAACATCGAACTCAG 58207 31 100.0 32 ............................... TAATTTTTTCATTTTTTGCCTCCCTTGCGCAT 58144 31 100.0 33 ............................... CGAAGTCCAACCACTTTTTGCCTACTCTTATAC 58080 31 100.0 34 ............................... AGGCGATATTGAGCAAGATGCTATGAGGGAAGTA 58015 31 100.0 33 ............................... TAACATGTTGTATGCTATGATTAACGTTGCAAA 57951 31 100.0 33 ............................... ACCGTCCCCCCGTTATATTCTGTACTGTTCCTG 57887 31 100.0 33 ............................... TCGCATAAATGTGCGAGACATCATAATCTCGAA 57823 31 100.0 34 ............................... TTGCAAGGAGACGCAATTATTACATGGTACATAA 57758 31 100.0 34 ............................... TCATTTTTTGCCCCCTTTGCGCATTTCGGCGCGA 57693 31 100.0 34 ............................... TTTTGTCATAATAATTTTACTCCATTACCCGCTC 57628 31 100.0 33 ............................... CTCGTCCTCGTCATTTTTGACAATAGCAAGGTA 57564 31 100.0 34 ............................... TTACCGCGTATACCGTAAACCCTGTTCTTACGAG 57499 31 100.0 32 ............................... TGACAACCTAATCCACGATACTAGCGATACGT 57436 31 100.0 33 ............................... ACGAAAAAGCATAAAGACGCCCGCTCTATGCGA 57372 31 100.0 35 ............................... AATGCACAATTTACCGATCACCATGTCCACATCGA 57306 31 100.0 34 ............................... ACAGTGAGCATGGTACCGTTGCGCCATGCACTAA 57241 31 100.0 34 ............................... TTTTTATCGACATCGAGCAACTCGGTTTCGTCTG 57176 31 100.0 35 ............................... ATTTAGCAAATGGATACAAAAAGACAGATTGCCCG 57110 31 100.0 33 ............................... GTACACGGCAACACGGGCAAAATCCATCACGAT 57046 31 96.8 32 ..........C.................... CCTGCCCTGAAAAATAGAGCGGAGCAGTAAGC 56983 31 96.8 33 ..........C.................... GGATGAATTCGGCGGTATGCCGTATACGAACGA 56919 31 93.5 0 ..........C...............A.... | ========== ====== ====== ====== =============================== ==================================== ================== 48 31 99.7 33 GTCGCTCCCTTACGGGAGCGTGAATTGAAAC # Left flank : TCCGGTATACCTTTGGAAATAAAAGAGGGGGCGCGCGATGATGATGCTGGTAAGTTATGATGTGGCAAAAGATGAAAAAGGGGAAAAGCGCCTTCGGCATGTGGCGAAGATTCTTGAAAATTACGGACAGCGCGTTCAATATTCCGTCTTTGAATGCTTAGTCGACCCCGCGCAATGGGTTGCGCTGAAAAGTAAATTGCTCAATGAAATAAATCCGAATTACGACAGTATTCGTTTTTACGCGCTCGGTGCAAATTGGGAGCGTAAGGTCGAACACGTAGGGCAAAAGAAACCGATCAATCCGCAAGGCGTTTTGATTTTATAATCGGATTTCTGGCTTTCCGGCCGCGAACGGGAAGCACACATTGGTTATTCATTCCGCTTGAATTTTATAACCCGTTATATTATAGTGAATTAGATATTGACACTGTAGTTTCGGAATGAAGTTCGCGGAAATTATAGTGTAAATATCGATATTACAAAAGAATAACTGCTATACT # Right flank : TCCTTGTTCGAGAAAAACGTTTTTACAGGAGTTTTCCGAAACACCGGACGCGACGTTTACATTTGACTGCGCATTTTTTTATTCGACAGCATGAGCCCACAGATCGTCAGCACGACACCCGCTATGCCGGGTGCGGTGATCCGTTCACCGAGTGCAAAATACGCGAATACAATCGTCACGACGGGAATTAAATAAATGCCGACGGTTGCACGGACGGAACCGAGCTTATCGCATGCGGTGTTCCACGCAGCAAAACAGAGCGCGGACGCGGCGACGCCGAGAAAGAGCAGATTTATCCAGTTGAGCGGTTTTGCAAAACGGGACATATTGACAGCCGCATCGAACGTTACAAAAAAATTGTTATTGTCTTTTGCAAGCGGTGACAGAGCACCGAAAAGTACGAGCGGTACCATGCAAACGATCGCGTAAAAGAATATATGTCGTACGACTGCCAATTTATTGCAGCGCAACGCGTTGATTTTCGTGACAAAGAGCGTATA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTACGGGAGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //