Array 1 2046046-2043757 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069442.1 Chromobacterium violaceum strain FDAARGOS_1274 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2046045 29 100.0 32 ............................. TTGCACGTTCTGGTTCGAAAACGATACATACA 2045984 29 100.0 32 ............................. CTGGTTCAGAAGCTATTACCGGCGGCGCTGGT 2045923 29 100.0 32 ............................. CTGTAGAAACTATAGCCGAAAGCACAAATGCC 2045862 29 100.0 32 ............................. GCATGGTGGAAGCCAAGCCCGGATAAGCGCCG 2045801 29 100.0 32 ............................. CCCTTACCAAGAGCGTGAGCTAGTGGCCTACA 2045740 29 100.0 32 ............................. ATTGTTGGTGGTAAGATGAAAGCGGAAGGAGT 2045679 29 100.0 32 ............................. TCGGCATTTATCTATAATTACTTGTGGACTTT 2045618 29 100.0 32 ............................. GGCTAATCAATCATGGCAAATAGTTTTTCGAA 2045557 29 100.0 32 ............................. AGCTTGGCAGATTGGAAAAAAAGAAGATAAGA 2045496 29 100.0 32 ............................. GAAAAATAACTTTGTTTGTAGGCGAATTGTCC 2045435 29 100.0 32 ............................. TTCGGCGATGCGATCGGTCTTGGCGTCGTAGT 2045374 29 100.0 32 ............................. GCGTTCCGCAAAACGCCTATGAGCGCGCGCTG 2045313 29 100.0 32 ............................. ATGGTACGGTGGTTGAATTTTGCGAGGTTGGC 2045252 29 100.0 32 ............................. CTGTCTTTCATGTGATCATTTTAGAGAAGATA 2045191 29 100.0 32 ............................. GCTTTATCGGTGATCCCGATTTCCTTTGCCAC 2045130 29 100.0 32 ............................. GAGCTGGCCATCCCCTGGCGCAGCATGAGCCA 2045069 29 100.0 32 ............................. TGCAGCTCACTGGCACGATTCGCGGGCTGGTC 2045008 29 100.0 32 ............................. CTCTACCTTATCTTGTTCTTCGAGCATCATAA 2044947 29 100.0 32 ............................. GCTACAAATACGAACTGCGGGAACTCTACACC 2044886 29 100.0 32 ............................. AAAACCGCACGGACGCAACCAGCGACGAAGCG 2044825 29 100.0 32 ............................. ATAATAAATTTGAATTAACTAGAGATTTTGAT 2044764 29 100.0 32 ............................. CCCGAAATGCGGAGCTTGCGGTGGTACTGGCC 2044703 29 100.0 32 ............................. TTGAACGCGCCCTCAGCCTCGCCGCTGAACAA 2044642 29 96.6 32 ............................A GGTCATCAGCATCGGAGCGCCTGACGTTACAG 2044581 29 100.0 32 ............................. TGCGCGGCCGCCAGGCTGTCATCGATGATGTC 2044520 29 100.0 32 ............................. CTGCGCGATGGCAAACCGCTGTTCCACCCGGA 2044459 29 100.0 32 ............................. CGGTCCAGCAGCGGGAGGCGGGTTTGCCAAGT 2044398 29 100.0 32 ............................. GCGTTGCGCGCGAGCTGCACATGATCCGCTAT 2044337 29 100.0 32 ............................. CTGCCGAGGCTGACTTGGCGCTTGATGATGAC 2044276 29 100.0 33 ............................. GAAGGGGGCGAAGCGTGAGCCAAAACAACGGAG 2044214 29 100.0 33 ............................. GTCATGCCCCAGTCGATGATGAACTGGGCGGGA 2044152 29 100.0 32 ............................. CTGTGGAGCAACTTCCATGAACGACAGACTCT 2044091 29 100.0 32 ............................. CCGCCAACGAGGCCGGCCGCAAACTCGCTGAG 2044030 29 100.0 32 ............................. ATTGAGCGCATCGGGCCGGCGCTGTGGGCGTT 2043969 29 100.0 32 ............................. GGCCACCCGCTGTTTGTCTCCGGCGAACTGCG 2043908 29 100.0 33 ............................. GATCGTCCGTCGAGTACACACGCACCGCAACAG 2043846 29 100.0 32 ............................. AGCGAATCATGGTCATGCAATACCGGCAATAC 2043785 29 79.3 0 ..........T.........A...TG.TC | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.4 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : CGGACATCGAAACCATGCTGGACGCCGGCGGCCTGGACAAGCCGGAGGCGCAGGGCGTGGTGGACGCGGCGTTTCCGGAAGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAGAACGCGCCGCCCCGGCTGCGCGGCCGGATGGCGATCTGGCTGCTGGAAATCCGCGCCGGCGTTTACGTGGGGAATTACAACCGCAAGATCCGCGATTACCTGTGGCAGCAGGTGGAAGAGGGGCTGGAAGACGGCAACGCGGTGATGGCTTGGCAGGCCGCCACCGAGGCCGGCTTCGACTTCGTCACCCTGGGCGCCAACCGCCGCATCCCGGCCGAGTTCGACGGCGCCAAATTGGTGTCTTTTTTGCCGCCGCCGGTGTCGGAAGCGGGGGGCGAATAGAGGGCGGGTGGGGTGTGGAGAAAGGTAGGTTTGGCTCTTTAAAAATCGGTAGATTTTTGAGTGGTGATTTTGTTTTGAAAAATCAGTTGCTTGCAGTTGGT # Right flank : CTGCCCGTCTATCGCTTGCTTAATCCGCGGCCGTCGCGCTGCCCGATGCGCTTGCGATCGACGCGCCGCGGCTTGCCGTCCGAGGAGGGCGCTTCCTATGCTGCAAGAATCGATGTCAGAGGAATCGCCATGCAGCAGTTAAGAGTGAGTGTTCTGGTTGCCGCGCTGTTTCTCGTCGTCGCCGTGGTGTCCAAGACGCTGGCCAGCTCCGTCACGGAGACCGTGCCGGTGTGGCTGGGCAGCGGGGTGACTTTTTCCGCGTTGCTGATTTCTCCGCGCTGGCGCTGGCCGGCCATTCTCGCCGGCGTGTGGCTGGCGTCGGCGATATGGGGGATGTCCGCGCATGGCCTGGGGCTGGCCGGCGCGGCGGCGTTCGCGGGGATAGAGGTGGTCAGCGGAGCCGTCGGCTGCTGGGTGGCCGGACTGGGGCGCAACGATCCGGATTCCCCGATCGGCATGGCCTTGCTTCTTTGCGGCGCGGCGCTGGCGTCCTGCCTGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2055826-2054821 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069442.1 Chromobacterium violaceum strain FDAARGOS_1274 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2055825 29 100.0 32 ............................. CCGGCGACGATTGGGACAAGGTGCGCGCGGCG 2055764 29 100.0 32 ............................. TCGGATCTGCAGGACACCCCATCCCCGGCAGC 2055703 29 100.0 32 ............................. TACTAGCGTCTTGATTCGAATTTTTAGCAGCT 2055642 29 100.0 32 ............................. GCGGCATTGCCGCATGTGCGCTCGAACTCGAC 2055581 29 100.0 32 ............................. CCCCGCCAGGATCAAACCGGCGGGGCTGATTC 2055520 29 100.0 32 ............................. CCGCCGATCGCCAGCGCCGCTACGCCGATCGG 2055459 29 100.0 32 ............................. CGCCTGGGCAAGTCCTTCAAACGCTGGGCGAA 2055398 29 100.0 32 ............................. CCCCGCAAACGCGGGGCTTCGCATTCCAGGAG 2055337 29 100.0 33 ............................. AATTGATCGGCAGTATCGCCAGTGATGGAGAAC 2055275 29 100.0 32 ............................. TTCGAACGCCGCGCCACCGTCACCAAGCTGGG 2055214 29 100.0 32 ............................. GTGGCAGCCTTGGGGTGACTTGCAGGCTATCT 2055153 29 100.0 32 ............................. CTGGCACCTACCGCAGACGACCCGGACGAAGA 2055092 29 100.0 32 ............................. GTCAAAGGGGAACCCCGCCCCCCACATTCAGC 2055031 29 100.0 32 ............................. GCATCCAGGGCGAGTTCGGAGGGCCAGAGTTG 2054970 29 100.0 32 ............................. CTGCTCCACATCCTGCAACACTCGCGCGGCCT 2054909 28 96.6 32 ....................-........ CCAGGGGAAGGTGGCGAGACGCTGCCGGTCCA 2054849 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.8 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : CCTGCTGGCGCAATGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGCTTGCCGCAGCTGCAATGCGCCGACCGCGCCTTCCGCCCCTTGCACGAGCAACTGGCCACCCAGGCGCTCACCGGCTTTGCCTGGTTGAACGCCGAGCATACGCTGCAGCAAACCCGTTTCGCCGACGGCAGCCGGCTTACCGCCAACTTCGGCCCCGCGCCGGTCCGCTACGATAAGCAAACCCTGCCGCCGCAAAGCCTGCTGGCCGAGCTGGCCGGCCAGCCGCCCAGGCTGCTGCCAGTGGCGGATTGCGTCGACAAGTAAGCGGCGGCGATAATGCCGATGTCGTTTTGCCGGTCATGGCGCGGCGGTTTGCCATGGCCGGCGAGCGGCATTGCCGAGCGATCGAGATGGTGATTTTTTGAGCGGAAAAATCGGTAGATTTTTGGGGTGGGTTTTTATCTTTAAAAATCAGCATCTTGAAATTGGT # Right flank : TTCATCTACTGGCAGTGATACGGGATTTCAAAAATATGGGGATTGAAGCGTGGGCGATGGTTGTGGGAATCGTCAGGCCAAACGGCAGGTACAACTCTCGACCCTGCAAGTCGCTGCCTAGAGAAGTTTCATGGCATGAGTTATGTCAATATTCTTATTGACCAAAATGACAATGTGCTTTTGGGCTGATAGCCTGCGCGCTTGGGTTGGTTCCAGTTGGCAGATCGGTTTTCACTGGGAGAGGCGATGCAGACAGAGTTGGACGGCAAAAAAGAGGTTCATGAACCCTCCAGTGTAACCGGACTAAGTTTTGATGATCTGCACCCCGCGGTCCGACAGCTATGGGCCAAAAGCGGTGACCCGACTGGCCATGGCCTGTTATGTCACATGCTGGACGTGGCTGCGGTGACCAGAGCTTTGCTCGACTACTGCGGGATTTCGGCCAAGGCGTTGGCGCTGCGTTTCGGCCTGCCCGAGTGTGCGGTGTTTCCATGGTTGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2064657-2063160 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069442.1 Chromobacterium violaceum strain FDAARGOS_1274 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2064656 29 100.0 32 ............................. TCTTTCTTGCCCAAATCGCGCGCCCAGGACTC 2064595 29 100.0 32 ............................. CTGCACGAACTGGCTCGGCTGGCCGGCTGGGC 2064534 29 100.0 32 ............................. TTCGAGCCTGGAGAATCGTTTAACAATAACGG 2064473 29 100.0 32 ............................. GACGCGGCTGCGCGAGACCATGCCGGTCCTGG 2064412 29 100.0 32 ............................. TGATCCTGCAATCTGACCGGCAGGCCGCCGGG 2064351 29 100.0 32 ............................. TATTCGACTGTCATTGCGTGAATTTGAGTGAA 2064290 29 100.0 32 ............................. AGCTGGACGCCTCTGATTTTCATGCCGTATCC 2064229 29 100.0 32 ............................. TCCAACGTATCAACGCACAAGAGGCCGAAAAA 2064168 29 100.0 32 ............................. TTGGGCAGGGAAACTAATTTTTGAGGAGAAGT 2064107 29 100.0 32 ............................. TGTAAAGCGGAATTAAGCGTTAGTGGCTACAA 2064046 29 100.0 32 ............................. CCCCTGCGAGCCGCGCCAACGGCGATGACCAG 2063985 29 100.0 33 ............................. GTAAGCATCCTGTTCCAGCTCCAGCGCCAGGCT 2063923 29 100.0 33 ............................. GTAAGCATCCTGTTCCAGCTCCAGCGCCAGGCT 2063861 29 96.6 32 .........A................... GCTTCGGCCTTGGTCGGCGGCGACGGCCCGGT 2063800 29 96.6 32 .........A................... ATGGGGGGCCAACTCGGATAGCAGCCGGTTGG 2063739 29 96.6 32 .........A................... CCGCGCGCGCCACGCTGCTGGCGTATGCCGAG 2063678 29 96.6 33 .........A................... TACGGCGTCGAGTGTCCGCGGTGCAAGCAGTGC 2063616 29 96.6 32 .........A................... ATGGTGGAGGCGGTCGCCCTGAATCCATGGGT 2063555 29 96.6 32 .........A................... CCCTTCCGGGCCTTCCTCCTGCAGCACATCAT 2063494 29 96.6 32 .........A................... AAATAAGGACACCCCCACATGCGCCCGACTTC 2063433 29 96.6 33 .........A................... AACAGCGGCGGAGCCTGGCTGTCCCGAGCGCTG 2063371 29 93.1 32 .........AT.................. GTCAACGTGATGCCGGTACTGCTGGGGCGCGG 2063310 29 96.6 32 .........A................... CTGGCCGAGATTTCCGGCGTGCCGGTGACGGC 2063249 29 96.6 32 .........A................... CTCTGCGTCTCGATGTACTCGTAGTCGCCGTA 2063188 29 89.7 0 .........A...............G..A | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.0 32 GTGTTCCCCGCGCACGTGGGGATGAACCG # Left flank : TGCCCACGCCGGGCGGGCCCCACAATATCATCGAGTGCGGCTTGCCGGACGCCACCGCCAAGCTCAGCGGCTTGCCCGGGCCGATCAGATGCTGCTGGCCGATCACCTGGTCGAGCGCTTGCGGGCGCAAGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGGCATGGCGCGATTTTGGCGGGATGGGGTGGAGAAACAGTATACCAGTTGGGGACACGCATGAAAAAAGCGGCAGTCAGGCGCTTTTTGCTTGCATGTCGATGGAATGAAGGTACGCTATGGTTGCTGGCCTAGCGTAAGCCTTGCTGTTGCGGAAGCTTGGCGTTCAGCATCAGAGGCGAGCGGTGTCGGACCCTTGTGCAAGGGACGATTTGCCAAGGCCTGGCGGGGTTTGCCGTGCTGATTTGAACGCCGCTTCATGGCTGGGAAAATCGGTAGAATTTTAGATCGGATTTTTGTCTTTAAAAATCAGCAGCTTGAAAATGGT # Right flank : AAGCCAGTGCCTCAAGGCTTGAGGGTTCGAGAATATTCCCCACGGTTGTGGGGGTGATTGACGGTGGACGGCTGGAGTGGTGTCGCGGCGCTGCCAGTCCGGCCGCGTCCGGCAACAAAAAAGCGCCCCGTGGGGCGCTTTTTTTCTGCACAACGAGTAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGATCACGGTGGTCGGCAATTCCACGGAGATGGCCTTGCCGTCGTAGAAGGTCACCTGGCACACGTCTTCCATGCCGTCGACGATGTAGTTGATAGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGGG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCACGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACGCACGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //