Array 1 70029-72636 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018690.1 Vibrio aphrogenes strain CA-1004 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 70029 28 100.0 32 ............................ GTTAATCCCGACCAATTGAGTTAAAAAACTTA 70089 28 100.0 32 ............................ AATTAGGTGCATTATTTGCGCTTAGTGAAGAT 70149 28 100.0 32 ............................ TTTGAAGATATTGAACCCATGAACATTTCATG 70209 28 100.0 32 ............................ TGATTGGTATCCGGATTTTTATCAACGAATTT 70269 28 100.0 32 ............................ TTTTTCACCAAGTGCAAACAATGCGCCTAATT 70329 28 100.0 32 ............................ AATAGGTAAACAGTTCATAGAACTGTTACCTG 70389 28 100.0 32 ............................ TTACTTGGCAGTTGAATATTCTAAGCATGATC 70449 28 100.0 32 ............................ TCAATAAAAACTTGGCGTTGAGGCTTATCAAT 70509 28 100.0 32 ............................ ATAAGCAAATTGAATAGATTCGAGCTGTAATT 70569 28 100.0 32 ............................ GTTCTTTAGGGGAGCTAATACCTCCCCTTTTT 70629 28 100.0 32 ............................ TAATATGCTTGTTATGGATAGGGAGCGCGGAT 70689 28 100.0 32 ............................ TGTTGAGCCTTCCATTGTTAAGCTTTATCGTT 70749 28 100.0 32 ............................ ATGAGTATAATAGGGCGGCAACACTGAATAGG 70809 28 100.0 32 ............................ TATACCGTAGCGTTGAGCATCGGAAACAACAG 70869 28 100.0 32 ............................ AGCCCCCCCAACTTCAACATTCAAATCTTTTT 70929 28 100.0 32 ............................ AATCAGCAAAACGGTCAACCAACTTCACAGAC 70989 28 100.0 32 ............................ TGTTGAGTTTGCAGAGATTGGAATATTGAAGG 71049 28 100.0 32 ............................ ACGCACAATATTGAACGCATCTTTACGCTCTG 71109 28 100.0 32 ............................ TTTAGGCGTTGTTACCATGTTCAAAAAACGAG 71169 28 100.0 32 ............................ GTCAAAGCTCATATATTGCTTGCCGTCTTTAA 71229 28 100.0 32 ............................ ACAGGAGCACAGAAAGATGCGTACTCTCGCTT 71289 28 100.0 32 ............................ TTGCGAATGTTCGCAACCAATAACAACTACTT 71349 28 100.0 32 ............................ TATGTTGTCGGCAACATCGAGCATCACATCAC 71409 28 100.0 32 ............................ CCAGCAGAACGCGCTGCACGTTACCGCAAAAA 71469 28 96.4 32 .............T.............. AATGGCGCAATTGAACAAATGATTGCCACTAA 71529 28 100.0 32 ............................ TGATGGGACTTCACGATCAGAAGCCTTATTCA 71589 28 100.0 32 ............................ ATCAATGACTTGCGCATAGGTTTGCACATACA 71649 28 100.0 32 ............................ TTGCCCTTCGGTTAGTTCAGGCTTGTAATCAC 71709 28 100.0 32 ............................ CACACGCACCGGAATGCCAAACACTTCCGCAA 71769 28 100.0 32 ............................ TATATGAAGCTTAGGAAGTGGAAGTCTTAATT 71829 28 100.0 32 ............................ CACCCTGAAAACTGGCAAACCTCAGCTTTCAC 71889 28 100.0 32 ............................ TAATATGCTTGTTATGGATAGAGAGCGCGGAT 71949 28 100.0 32 ............................ TCCGTGTGCTAACTTGCCGTCGATAGTGTATG 72009 28 100.0 32 ............................ TTGCAAAGCTGGAATAAGTATAGCTGGCATAA 72069 28 100.0 32 ............................ GTGCAAGCATTCCAAGAAGTTAAGTATAAAAA 72129 28 100.0 32 ............................ AAGCACTCCAAGTGATACGAATAACGCTTATT 72189 28 100.0 32 ............................ ACACAGCATATAATCATAAGTAAAGGCTTGTA 72249 28 100.0 32 ............................ TTGTGGAACAGAAGAACAAAAACCGCCTTTAA 72309 28 100.0 32 ............................ GGGGATTTCATCAATACCACCGTGCGCAACAC 72369 28 100.0 32 ............................ ATCGCCTGTTGTGTGTTTTTAGTGTGTTACCA 72429 28 100.0 32 ............................ ACCAAATCGGTGCAGCTATGTGTGAACTGATC 72489 28 89.3 32 ..........G.AT.............. AGAGTCGAATGCAACAAAGACACGCCACGGTT 72549 28 89.3 32 ..........G.AT.............. GAAGAACGTGGCGATGACGAATACATCAAACG 72609 28 85.7 0 ..........G.AT..........T... | ========== ====== ====== ====== ============================ ================================ ================== 44 28 99.1 32 GTTCACTGCCTCCCAGGCAGCTTAGAAA # Left flank : GGTTGAAAAGTTTGTTTATTTTAAACGTTGGCAACATAAGTCACCAGAAAAGTTACGCTTGAATGTGGCTAAGCGGGCGGAATATTTATCTAACAAGCATGGTTTAGATTTTGAAGAAACAAAAAACAACTTACTAAAATCCATTGAAAACTATGAAGAAAAATCGGCTTTGCCTTACATTAATCTAACTAGTTTATCGACAGATAAAATGGTTGCTCACGAACAACGAAAAAACTTTAAGTTATTCATAGAAAAACAAGTTGTTGATAAACCTAGTGAAAACAGTAAGCAATTTACATGTTATGGTTTAAGCCGCCGCAGTGTTGAAGATGGAATGACTGTACCGTGGTTTGATTGATGTAATTCAATACCAATAAAATTTGCTCTTTAAAAATAAGCTTTAAAAACACGGGGTTACAATAGGGTGATATTTATAAGGTAAAAATGGTTATTTTTATCTATCTTCCTGTTGTAACTTATTTTTTGGTTGTTATTCTATT # Right flank : AGAAGCGAGATGTAAAGAGGAAAATATATGGAAAGTATTTTGATGTGAGGCTGGGTGATTTTTCTTGTTTATCTCAAACAACAAAAAAGTGAGCGCCTCTCAGTGCTCACTTTTTCTCATTTTATTTTCCCTTAAACCCTTATTGATAATTCTCAATACTTGGGCAAGAGCACACTAGGTTTCGGTCACCGTAGACGTTATCGACACGGTTGACGGTTGGCCAGTATTTGGCAGCTTTCGCTTGTGCTGATGGGAAGCAAGCCTCTTCACGAGTGTATGGGTGATCCCATTTGGCACTCATTAAATCAACTTGGGTGTGTGGTGCGTTCACCAACGGGTTATTGTCGAGTGGCCATTCACCTTGTTGTACTTTGTCCATCTCTTGGCGAATTGCGATCATGGCGTCACAGAAGCGGTCGAGTTCGGCTTTGTCTTCAGACTCGGTTGGCTCGACCATTAATGTGCCGGCAACTGGGAATGACATGGTTGGCGCGTGGAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCTCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.60,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //