Array 1 72911-75867 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDF01000008.1 Salmonella enterica subsp. enterica serovar Legon strain NRWCIVA .SLX_12186.D705_D506.HJ72NBBXX.s_1.r.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 72911 29 100.0 32 ............................. GCGGTGCTTCGCTGGTGGACGAGGCGCTAAAC 72972 29 100.0 32 ............................. AGGCTCAGGAGCGAGAGCAGTTAGCGAGCAGG 73033 29 100.0 32 ............................. CATACTGCGGAACACAGTTCCACCCATATTGG 73094 29 100.0 32 ............................. TTAAAAACACAAGTCTCATTATGGGAAAAAAT 73155 29 96.6 32 ............................C AATCGCGTTACGCTCAATGCAGGGAACCTGGA 73216 29 100.0 32 ............................. TAACTACTGAATTTCAAAACGCGGCTACTCTT 73277 29 100.0 32 ............................. GGTTGTCTGGTAATGCTGCATATTCACGCCTC 73338 29 100.0 32 ............................. AGCCGTTTATATTAATAATGTAACATGTAGAA 73399 29 100.0 32 ............................. GCTACGGTAATGCCATAAACGCACAGGCTGCT 73460 29 100.0 32 ............................. CAATACGACTGGACGGGATTTGATTCATTAAC 73521 29 100.0 32 ............................. GCCCACAAGGAAGGCGCTTACTTTGTTGCTAA 73582 29 100.0 32 ............................. AGATCTCTACGTCGGAGAATTCTGGCGAATCC 73643 29 100.0 32 ............................. GGCTATCGCAGCGTTCGTGACCTGATAGCGTC 73704 29 100.0 32 ............................. CCTTTAAGGGAGAATGCCCAATTTGCAAGCGT 73765 29 100.0 32 ............................. ATTTTAGCAGTTCCTCCGCAATATACATTGCC 73826 29 100.0 32 ............................. GCGTCAGCGTGGCGCGCGTTGAGGTATTGCGG 73887 29 100.0 32 ............................. TTGAACCGTCAACTGGAATTAATAATTTAATT 73948 29 100.0 32 ............................. CCGTTAATTTTGCTGATGGAAATGATAATGCA 74009 29 96.6 32 ............................T GGTCGGAGGCACGAGTGGAATAGGCGCGATAC 74070 29 100.0 32 ............................. ATGCGGCGGTAGTGTCATTTGTGCCAGTCTGA 74131 29 100.0 32 ............................. GGGTCTGGTCAGGGAACTACTGATACATATTC 74192 29 100.0 33 ............................. CCGGAAAACTTCCTGTCGAGCCGCACCTCATGC 74254 29 100.0 32 ............................. CTGCCGTCATTTAAAATAACCTGAATTGTATA 74315 29 100.0 32 ............................. AATTTTCCCTTTGCGTTAATACTCCATCGGAA 74376 29 96.6 32 ............................T AATTATTGACCCAGACGGAGGATGGAGTAGAG 74437 29 100.0 32 ............................. CGAAAGTAGAACGGGCGGGAGAATATTTAATA 74498 29 100.0 32 ............................. TTAAAACGTTTAAATCCATTAGAAAATAAATC 74559 29 100.0 32 ............................. AGATGGCACAGAATCAGGTTTTTCAAGCGCCG 74620 29 100.0 32 ............................. CTGATCCAACTTACCAAATTAGTGCTGGTAAT 74681 29 100.0 32 ............................. GGTATCAACAAACTGTTATTTCATTCATTACG 74742 29 100.0 32 ............................. GATTATTATCTGGTGTTGATATAAACGATAAT 74803 29 100.0 32 ............................. TTAATATTAATGATTATCCTTCCGGAGTAACA 74864 29 100.0 32 ............................. ACCGCCAACTAAGCCAGCGCCAAACCCACCAG 74925 29 100.0 32 ............................. GACTTTGTAACCGATCCACATAATACACATAG 74986 29 100.0 32 ............................. GCGTCTCCATGCCGTTGATAAACATCCCGCCC 75047 29 100.0 32 ............................. ATCAGTTTCCCGACAGTATTGCCGTTCTGCTG 75108 29 100.0 32 ............................. AAAAAATGGAGCGCCTGCAGTCGACGTTTACC 75169 29 100.0 32 ............................. ATCCTGAATATGGAACATGTCGGATAACGTTT 75230 29 100.0 32 ............................. GCGCCAACCATCAGGGTTTAACCAGGCGATGA 75291 29 100.0 32 ............................. GCTTCGCTAAATGACACGGCTAACTCAGTAGC 75352 29 96.6 32 ............................C TCACAAAACCGCTGCGCCAGCTTAATGCGGTC 75413 29 100.0 32 ............................. TCCGAAACCGCCGTCGCACTGGCTGACGGTGT 75474 29 100.0 32 ............................. CAGTGTTTCCCGATGCCTGAAACTTTCCATGA 75535 29 100.0 32 ............................. TTGCAGGGTGATATTGTTGTTGGTGAATGGGA 75596 29 100.0 32 ............................. CGTTTTCTCCGGAGAACCGCTACAAATACTAA 75657 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 75718 29 100.0 32 ............................. AGAACCATCTTTCTGCGATTTATACTCAACGA 75779 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 75840 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTACTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 84308-85496 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDF01000008.1 Salmonella enterica subsp. enterica serovar Legon strain NRWCIVA .SLX_12186.D705_D506.HJ72NBBXX.s_1.r.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 84308 29 100.0 32 ............................. CGATTCGCGCTGGATCATCTCGTTCGCGCCGC 84369 29 100.0 32 ............................. CGCCCAGATACTGGCAGACCAAATTGCAGCAC 84430 29 100.0 32 ............................. ACGACGTCACTAACCGAATTTATAACCTTGGT 84491 29 100.0 32 ............................. GACGCATGGGAGCACGGTAAACCACTGGCGCA 84552 29 100.0 32 ............................. CAGCCGCCTGGCAGAATAAACACCGCGGAACA 84613 29 100.0 32 ............................. TCAACGAGACACGCAGCGCGCTGGACGGTTTC 84674 29 100.0 32 ............................. GGGATTTTGATTCCTGACGATGTTTTGTGCCG 84735 29 100.0 32 ............................. CTGAGCGTAATAGGGAGGAATATGCGCAAAGC 84796 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 84857 29 100.0 32 ............................. CGATGGAATTTAGGGGGATATCTCAGAATAAA 84918 29 96.6 32 ............................A CTTTGGTGCCTATTGGCAACCCCATTAAGTCC 84979 29 100.0 32 ............................. ACATAAACGGACGCGCGGGGATCCGAATTTTT 85040 29 100.0 32 ............................. TTCGCCGTCGTGAAAGCGGGTGAGCATTCCAG 85101 29 100.0 32 ............................. CTGGCCCCGCCCCGTGGTGTTTTTCGAAATTT 85162 29 96.6 32 .............T............... GCTGATAGCCAACCTGTAAGTGATCGTGATGA 85223 29 100.0 32 ............................. GTGCGAAAAATGGCAAAAGGATCGAACAAAAA 85284 29 100.0 32 ............................. TCGGCCTGTGCGGTTGCGGCCTGCCATTGCTC 85345 29 100.0 32 ............................. GAACAGATCACGCTCGGCGACGCGGCGGTTAT 85406 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 85467 29 96.6 0 A............................ | A [85493] ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCTGCAAGCCTGCTGGCGCAGCAATTTTCTGCTCGTATACGCCGTCAACGAGTGCTCTGGCATTATCCGGCATACGGATCTCACCATGTTGACGCAGTAGCGCCTGTGTACGCCACAGGCAGGCATGATCGGCGTAAACAAAGCCGGTACCTTTTAGCTCTTGCCCCAACCAGCCCTCTTCTGCCTGCTCCTGCCAGTGAGGGGCCAGAATATGCAATATTGGTGGCTGGCGTTCATCCGGAAGCGTAGATTTTCGTTGCCCATGGGCATCGCGGATATGGCGTTGCAGGCGACCGGCGCGCTGGATCAATAAATCAATCGGCGCCAGATCGGTGATCATCCAGTCAAAGTCCAGATCGAGACTTTGTTCAACGACTTGTGTGGCGATTAATACCTTACCACGTCGTTCAGAAACGGGGGCATTGTTACCAAACCAGTTTAACGTTTTATTTTCAATAGCAATACGATCGATAAAAGCAAAACGGCTGTGGAAAAGCAAA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //