Array 1 63893-61401 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZHR01000001.1 Moraxella catarrhalis strain COPD_M32 NODE_1_length_348356_cov_44.5977, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 63892 28 100.0 32 ............................ GACCACATCGCCATTTTCACGGTTCTGCTGAC 63832 28 100.0 32 ............................ CTTAGCAAGCAAAGAGCGAGCACTGTCAAGAC 63772 28 100.0 32 ............................ TTTGGGCAAGCAAGCCTAGCCACACATTCAAA 63712 28 100.0 32 ............................ TGTTACCTGCTCCCAACCAATGACAAGCGTGG 63652 28 100.0 32 ............................ ATACTGATTGTACCATTTGCAAATGCGCTAGT 63592 28 100.0 32 ............................ AAGCGACAAAATATCACCTTCAAAATAAAAGT 63532 28 100.0 32 ............................ ATCGGCAAAATCGGCACAATTGAAAGCAACAT 63472 28 100.0 32 ............................ ATACAATTTATAAATCTGGTTAAAGTCTTGGA 63412 28 100.0 32 ............................ ATAGATGTGGTTGCCCATTGCAGACCAAGCTC 63352 28 100.0 32 ............................ TGACAGCCAACACTCAATCAATCATGAGCCTT 63292 28 100.0 32 ............................ TTTTGTAGTGAGTGGTGCTTTGAAGCGATCAC 63232 28 100.0 32 ............................ TTTTAGCGCCTCTCCACATACTTGGGCGTAAA 63172 28 100.0 32 ............................ TAGCTGAGTATATGGAAGAAAACAAAGATACC 63112 28 100.0 33 ............................ CATCACCAAAGATTACATGACCATTCATTATAT 63051 28 100.0 32 ............................ AGCCAAATGCTGGGGTTTTAGTAGACGAATGG 62991 28 100.0 32 ............................ CTAGAAGTTTTGAGAAATTGTGAAAGTCTATC 62931 28 100.0 32 ............................ AATGAAACTGATTGAACTATTTAAAAACTTAT 62871 28 100.0 32 ............................ AGTCGTCGAAGCGTGGCTTGTCGCCGTTGGCA 62811 28 100.0 32 ............................ AATCAAATATCTGCTGATGAGATAAAACAAAC 62751 28 96.4 32 ...........T................ CACCCAAAGACATTTCAATTCAGTTACTTAGA 62691 28 100.0 32 ............................ CTGCAAATCCTCTGGAGCTGCTGTCCAGTCTG 62631 28 100.0 32 ............................ AAAATAAATGGCTTCTGTAGCGTTAAATCGCT 62571 28 100.0 32 ............................ GATTCACTAATGATTCTAAAAACTTGTTTCAT 62511 28 100.0 32 ............................ AGAATACTATGACCAGATGAAGCTCATTATGA 62451 28 100.0 33 ............................ CTATTTACCCACCTTTCGTGAGAAGCCTATCGG 62390 28 100.0 32 ............................ CAAGATTTATGCAAGAGATGATGGCGAGATGG 62330 28 100.0 33 ............................ AAGGCGTTCCAAAGCTATCAAAATTACCATTAT 62269 28 100.0 32 ............................ TTTTTAGTTTTTGCGTGGTCTGCCCCGTTTGA 62209 28 100.0 32 ............................ GCCATCGCTTATGAGCAGACAAGAAGCGACCC 62149 28 100.0 32 ............................ AAATGATGGCGAAAACTGGACAATCATTGATG 62089 28 100.0 32 ............................ TTTTACCCAAGCCAAGAGAAGTTTTTTGAAAA 62029 28 100.0 32 ............................ ATCTGAGTATTTTTTCATCATTCTTCAATCTC 61969 28 100.0 32 ............................ TTGGTATAAAAATCTAGCCCTTGCGATACAAA 61909 28 100.0 32 ............................ AATGATGATAGCGTGCTTGAGCTTTTAAAGTC 61849 28 100.0 32 ............................ ACCGCCAACGCATTAATGATTGGGTGTTTGAA 61789 28 100.0 32 ............................ CACACTGATGCCACATGCCGTCAAAGGCGATA 61729 28 100.0 32 ............................ GTTAATGCGTCTTGGTGTTGTCAGTTTTTGAG 61669 28 100.0 32 ............................ GTGTTTTATCAAATCAGCACCGATAAGCTGTA 61609 28 100.0 32 ............................ AAGATATACCGGTAGGGGCAGGCAGGGTAATA 61549 28 96.4 33 .C.......................... TCAGACAAGCACAAGAACTCTATAAAAATGCAC 61488 28 100.0 32 ............................ TGGGGAAGTTAGGCATTTAAAATGGCAGGATA 61428 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 42 28 99.8 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAGCT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGACGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAACAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //