Array 1 3027-3667 **** Predicted by CRISPRDetect 2.4 *** >NZ_VRXM01000092.1 Escherichia coli strain 1_39_12 NODE_90_length_5052_cov_32.183553, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3027 29 100.0 33 ............................. TTTGGATCGGGTCTGGAATTTCTGAGCGGTCGC 3089 29 100.0 33 ............................. CGAATCGCGCATACCCTGCGCGTCGCCGCCTGC 3151 29 100.0 32 ............................. TCAGCTTTATAAATCCGGAGATACGGAAACTA 3212 29 100.0 32 ............................. GACTCACCCCGAAAGAGATTGCCAGCCAGCTT 3273 29 100.0 32 ............................. CTGCTGGAGCTGGCTGCAAGGCAAGCCGCCCA 3334 29 100.0 32 ............................. TTGAACTCACCACGATTGTTAATATGGACGAT 3395 29 100.0 32 ............................. GGGGGCGCATGACCGTAAACATTATCCCCCGG 3456 29 100.0 32 ............................. GGAGTTCAGACATAGGTGGAATGATGGACTAC 3517 29 93.1 32 ............TT............... CCCGGTAGCCAGGTTTGCAACGCCTGAACCGA 3578 29 96.6 32 .................A........... GCAACGACGGTGAGATTTCACGCCTGACGCTG 3639 29 89.7 0 .T.........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCCGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAAACGGGATTTGAGTTCCAGACATTTGGGTTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCTCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGAGCCTTATCAATATGTTGGTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCCTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22374-22162 **** Predicted by CRISPRDetect 2.4 *** >NZ_VRXM01000014.1 Escherichia coli strain 1_39_12 NODE_12_length_122780_cov_32.367476, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22373 29 100.0 32 ............................. GCAAAAACCGGGCAATCGCAAAAAGGCGTAAT 22312 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 22251 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 22190 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATGGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 117138-116384 **** Predicted by CRISPRDetect 2.4 *** >NZ_VRXM01000006.1 Escherichia coli strain 1_39_12 NODE_5_length_174987_cov_28.862021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================== ================== 117137 29 100.0 32 ............................. TAATGATGACGCTGCGCCCCCAAAGCCTTAAG 117076 29 100.0 32 ............................. CAGTTGAGTTGCATCATTTTTTGACTGAGATT 117015 29 96.6 32 ............................A TACTGATACTAAAACGGGATTTTCGTTGTTTC 116954 29 96.6 32 ............................A TTTGCAAAGCCGTTCGATAGGTCGAAATTTCC 116893 29 96.6 32 ..G.......................... CGGTGGGCGAACGTGCCGGGAGTGGTGGCCTT 116832 29 86.2 32 ..G.........T.C........A..... GAGGGGAACTTGCACCAGACGAGTTAGATCAG 116771 27 89.7 32 ..G.............--........... TTCCTCTTTGGTTTCGCGATTATTTCCACCTT 116712 27 86.2 32 ..G.........T...--........... CTTGTCCGCAATCCGGCGTTTCATCGCCGTTA 116653 29 79.3 91 ..G.......G..T.A.A.........T. GGGCATGTGGCTTTCTACGGAAAGAACGGAATCGAGCTTCCCCTGTGCGGGGTTATCGGTGCCCCAGTTCCTGACAGACTATCTCAAGAAC 116533 27 93.1 32 ................--........... GGATGGATGTCCTGAGAAATTACAGCGTGACC 116474 28 86.2 34 ..G..........A..-.........T.. CGTATTCGAGGGGGCGATATTACCCGGCCCATGT 116412 29 86.2 0 ..T...........C..........A..A | ========== ====== ====== ====== ============================= =========================================================================================== ================== 12 29 91.4 38 GTATTTCCCCTGCGTGCGGGGGTTATCGG # Left flank : TAAAGATACAAAGGCGGATTTGCAGAAAAAAGTTAACGAACTGGATGAAAAAATTCAGTCTCGTAAGGATGAAAAATCCGAAGCCCGTGAGTCCATTCGTCGTCCTATTGACCCCTATGAAGCATTCATTGCCGGGGCTGAACTGAATCACCGAATGAGCATTAAAAATGCCACTGACGAAGAAGCAGGCCTGTTTATTTCTGCGCTTGTTCGTTTCGCTTCTGAACCGCGTCTCGGCGGTCATGCGAATCACAACTGCGGGCTGGTGGAAGCAAACTGGAGCGTCACGACATGGAAGCCGGGTGAACTCACGCCAGTCACCCTCGGCGAGATCAGTATTAGCCCTATCGGTGTAAAAATCGAAGGTGAAGAGCTGTCCGCTATGGTCGCTGCTTTTGCAAAGGCAGATGGATTTGATTTTAAAGCCCGGTGATGCATAATTTCTCGGTAGGAAAAATATGACCTATTTTTCCTTTTTATATCAATGCAATATAGTTAGA # Right flank : TGCTGTGGGCGAAGGAATATGCCATCAATAGCATTCCCCTTCTGGGGGTTAACGGGCCGTAAGAAATGCAAGTATTGATACATCCCCTTTTTTGGGGTAAACGCATGGTAAAAATGAATAGGATTTTTTAGCGAGAAAATCAGAATAGGATTTAGCAAAACAGTTTTATTGCTACAAATACCCTTGTTGGTTAAAATACATACTGTATAAACCAACAGGGGTATCCGTTATGGATTTAAGAAAGACATTTGAACAACTTACCGACGAACTGCTTGCGCTGAAAAAACTGATCAGCGAAAGCTCGCCGTTGTTTGCTCGTGTCTCGGTAATCCCCCCGGTTTTGCGCGGCGCGGAGAATGAGCCTGTTAATGAGATTGTTCCCATTCAGTTGTACGGGCGGGAGGCAATGATTAAGGCTGTAGATACGTGGCTTGACCTGCATATTAAAGATGAGTTTTCTCAGAAGGCGGCACGTCGCGCCTCGGGGGTGCTCTGGTTTC # Questionable array : NO Score: 4.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:-0.42, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCCTGCGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 155122-154730 **** Predicted by CRISPRDetect 2.4 *** >NZ_VRXM01000006.1 Escherichia coli strain 1_39_12 NODE_5_length_174987_cov_28.862021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================== ================== 155121 29 100.0 32 ............................. TCGTGGAGCCGCTCGAACCAGCGCTGGAACTC 155060 29 100.0 32 ............................. CGGAGGCTTCTCTGGATTCTCAGATTCGTTGG 154999 29 96.6 32 ............................C GTGGTTAAGCCCTGACTGCTCGCGGCTGTAAA 154938 29 96.6 32 ..G.......................... GAATCAGAGGCAAGGCCGACGCAACCATTATT 154877 29 93.1 90 C.G.......................... CATTTTACGCGATGGTTGAAGAAGCTTGTTGAATGTTTCCCCTGCGTGGGGTTATCGAGAGACGCAAACACGGCACTACAGCAACGAGAG 154758 28 93.1 0 ............T..........-..... | T [154732] ========== ====== ====== ====== ============================= ========================================================================================== ================== 6 29 96.6 44 GTATTTCCCCTGCGTGCGGGGGTTATCGG # Left flank : GGGGGGCGGCGATCAGGTTTTTACTCAAAATGGGTTTTACGGTCGGCCTTGTAGGGTATCCCGCTGTAGGTAAGTCATACCTGCTCGCCCGGACATTGCCAGAAGGTTTTATTGACGGTCGAGAACTGGTGGCGAAGAACAACTGGGAAACGCCGGTGCCATTCCCTTCCGACAAGATCCCGTCCGGGCCTGTAGGCATTGATGACGGAAATGTGTTCGGGGATCAGGCTTTGTTATCGGCAGCGGCGTCCCTGAAAAAATGCGGCGTTGTGTTTACTGCTCAACGTCTGAAAAATGCAGAGAGCCTCGCGGCAAGTTTAATGGCGCGGCGTGTGCTGATTTTTTATATCGGTGAGTATGAGTATTTTAAGTTTGAAGTTGCGGCACACTATGATCGGCGCAGGAAATCCTGAACCTGCGGAGGTGATTTTTACGCCTCAGAATCTGGTGGAAAATGAATAAATAGAATTTGCATTTGTAATCAATAGTATATATTTAGA # Right flank : GCTATATCGAACGCGTAACGGGGAAGTGATTTTCAGAAGAAAACATTCGCTCGCAAAATACCTATAGCTAAAACCGGTTCGCCGGTTTTTTTTTGTGCCTGCGGTATTCGGCATATCTTTTGCGGGAAGGATAATAGATTCCTGCGAAACTATTTGAATAAGGTGACAATAATGGCTCAGGTTCAGAGAGGTAAAACGGTTCCCGTTCGGCCATCAGCGACGTATTTCAGCTATAGCCCCGACGACGGGTATGAGGAGCATGACTCCCCGGAGAAGGCAAAAGCAGCGGCAGACGCTGCAATTGATGCTTATCGGGGTGAAGCATGTGATGGCTGGCCTGATGAAGTGACCGGTGTTACGTGGGGTGTGGTGGCACAACGAGCGGCAAAGTTTGGCGAGCGTAAGCGCACCAATGAAGACGCGCATCTTTCTCCAGAAATTCAAACGGTCTGTGACTACTATCTTGCGCCGGAAGTGACCGTACCAGCCTCACTCCCCTT # Questionable array : NO Score: 4.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-1.04, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCCTGCGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //