Array 1 840526-839277 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDVY01000002.1 Pectobacterium versatile strain PB69 PB69LOC_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 840525 29 100.0 32 ............................. CAAAACGCCATTAATTTTATCCGGCAGTTACC 840464 29 100.0 32 ............................. CAGATGGTTGGTACCAAACCACCAGCCGCAAG 840403 29 100.0 32 ............................. AGGTCATCACACCTCGCCGCCTGCACGACGGA 840342 29 100.0 32 ............................. CACTTCTTGCAGAATTTGCTGGCTGGTGTCCG 840281 29 100.0 32 ............................. TCAAATCGGCGCTGGCCGTCCAGCTCAACGCC 840220 29 100.0 32 ............................. TGCAAATGGTCTATTCGCAAGTTGAACGCGCC 840159 29 100.0 32 ............................. GCATTGATTGATGAATGCCTGGCGGATTGGGT 840098 29 100.0 32 ............................. CTGCGCCGGGCTTACATTTTCGGGCAGATGTC 840037 29 100.0 32 ............................. CCTGGCCATCATTACCGCTAAAGCACGTAGTG 839976 29 100.0 32 ............................. CGATATAGAAATTATAGGCCGCGTTTTTTGGT 839915 29 100.0 32 ............................. CTTATTAAACGATTTGAGGGCTGCGAACTGGC 839854 29 100.0 32 ............................. TATGGAAACCGGGCAAATGCCTGTTATCTGAG 839793 29 100.0 32 ............................. CCGTTGATCTATCAAGAGCGTAAGAAGCCCGA 839732 29 100.0 32 ............................. CCGTATGGCTCTAAATTCCCAACGTTGGAAGA 839671 29 96.6 32 .............C............... GGCGACTTACCGGCTTGCGATTCTCGGGGTGT 839610 29 96.6 32 .............C............... GCAGATAAATGAAGGCAAGGCAAAAACGGCGC 839549 29 96.6 32 .............C............... GCATGGACTTTGCCGCACAGGCCGACGCTATC 839488 29 96.6 32 .............C............... ACGGCATTCTCTAATCGTTTTCTCAGGTATTC 839427 29 96.6 32 .............C............... CACGGTGCCTGGCGAAATCAGCGACCCTGCAC 839366 29 96.6 32 .............C............... TCGGGACGGCGTTTTTTCATCGCGCCCCCACT 839305 29 93.1 0 .............C.............T. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.7 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : TCCTCTGCTAATTATTTACTGCGTTACTTTACAACGACGGATATGAATTGATTTTTTCCAATTCATGTCAATATACTTGTAATCATTAGATATAGTGGATGAAAAATATTGGCATTTACAGGTTATATCGATATTCGGTTGAGAAAGAATATTTTTAACAGGGAAATTTTTACCGAGAAATAGAAAGAAAAGCGCAGTGGTATAGCTCTTGCAGCAGTGTGCAGCGTTTAATTCAGCAACTGAACGTTTTCCAGATGTATGAAATCAAACCGGCAGATCAGGGAAACGTGGTGATAGCGTGGGCGAAAAACACGGAATCTGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCTGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAAATCTCTACTTTTAGA # Right flank : GGCTTATACCCCTTGTTGCATGTTGGTCTAAATATTCTCCGCACGGAACCAAATCCCGCTTCTGGCTGGCGTGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTTGTGCTCACCGTCATGGTGAGGCGCTATGCCAATGATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGGTATGATTTCACCCGCATTAGCCCTGCTGAACTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGTCGGCTGGGGCGTGAAGAAGGCTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGAGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCGAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 844398-842722 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDVY01000002.1 Pectobacterium versatile strain PB69 PB69LOC_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 844397 29 100.0 32 ............................. AGATCCCGGTTACTCAGGGGTGGAGATAGCGA 844336 29 100.0 32 ............................. CGGTTAAAATCGCCCAGGAAGGCGAATTTTTT 844275 29 100.0 32 ............................. GCAGACGAGATTATAAATGGTAAGCGCGATGC 844214 29 100.0 32 ............................. GCATTCCACCAGCTCCAGTGGGAACAGAAATT 844153 29 100.0 32 ............................. ACCTCGTTGACTGTTCGGCTGAGTGGCCTAAC 844092 29 100.0 32 ............................. ATAATCCTGATGGCCCGATACGACTACTGAAA 844031 29 100.0 32 ............................. CGCGTGATGTCCAATCTGCGCGTTGCCATGCC 843970 29 100.0 32 ............................. CGATGACTTTACGGTGTACCTCCTTGCTAAAA 843909 29 100.0 32 ............................. CACGTATGCGTTACTGTCGTCAGGTGACGCAG 843848 29 100.0 32 ............................. TATACTACGGCGATGAAAAAGATTTCTGGTGT 843787 29 100.0 32 ............................. AGATGGTGTTGTAGTAGATTTTGATGAACATA 843726 29 100.0 32 ............................. TCTTATGTAGATCTTGCCATGTCGCAGCATCC 843665 29 100.0 32 ............................. TCAATGCCTCGATCAGAGTTGACTTACCGCCA 843604 29 100.0 32 ............................. CCTAGCGGTAACGTTCCCCTGTACCCACATCA 843543 29 100.0 32 ............................. AGCTCGAATCATGGGTAAACGATATGCTTCAG 843482 29 100.0 32 ............................. AATCAGATAATGCGTTTCGCGTTCGTCGCAAT 843421 29 100.0 32 ............................. TCATCATCCATCTTGTATCCCTTATTATAAAA 843360 29 100.0 32 ............................. GATAAATTATTTTTCTATGCAATACATGATCA 843299 29 100.0 32 ............................. CGGTCGATTAATTAACCCTGCGGCATCGACGC 843238 29 100.0 32 ............................. GAGTTATTTGGTGATTGCTCTAAATCGGTTGA 843177 29 100.0 32 ............................. ACTAAATGAGTCTTCCAACATTTCAGGTCTAC 843116 29 96.6 32 ............T................ CTATTCTTGCTGAATCAGGTATCGAGGTTGCG 843055 29 100.0 32 ............................. CTCACTATGTGCGCGTATTTGGTAAACACGCT 842994 29 100.0 32 ............................. GTGAGGAATTATTCACGCCGGAGAATATTGCG 842933 29 100.0 32 ............................. GATATTCAATTGCGCTAGAAACGCAAAAGAAT 842872 29 100.0 32 ............................. GCTAGGATGATAGGCTTATCCATTATGCATCC 842811 29 100.0 32 ............................. ACATGGTGAGGTCTAAGCGATTCGATACCGGT 842750 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGACGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCACCGGACGATGCACAGCCGCCTGCAATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCAGTGTGGTTGCTGGAAGTCCGCGCAGGCGTGTATGTCGGTGATACGTCACAGCGGGTAAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTTTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : ATGTGAAATGTAAATTACACATGTTTCCTTATTGTCAACTCGTTCCGTTTACGGCATAGTGTTTCCAATTTGGAAACAACAGGAAAGGCATCAGGATGCATGTTATTTCGCGCGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGCTGATCTATATAGGGTGATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCCAGCCTGGATAGGATGAAATATCGGGAAAAGTGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTCGAGCGGGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCCGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCACCTCTCGTAAGGATTATGAGGATGCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 162930-163138 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDVY01000003.1 Pectobacterium versatile strain PB69 PB69LOC_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 162930 28 92.9 32 A..T........................ TGGCGTCACGTCAGCACATGCCGAAACCTCAC 162990 28 92.9 33 ...........TG............... ATGATGTTGAACGCATAGCCCGGCCGGATCTCA 163051 28 100.0 32 ............................ TGAGAGATCAGCACTCCGTCGTCATCGTTGCA 163111 28 85.7 0 ...........T.C......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 92.9 33 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AACCGACGGACGTCGGTGGCACGCTGTTTGGCGGCATGTTTAGCGCGATGTTCGATCTCATCTACTGGTCTTGCGCCGCATCGGGTTTCTGCTTTCTGGCGCTCTTTCGGCTTTCAGGATGGCGTGTTGCCTGGATACTCGCGGGGCTGGTGCAAATCGGTATCAGCGCCCTGTGGCGGATTCAATATTGGCAGGAGTATGAAAACGACAATGTGATACTCTCCCCGATGCCCGGTGAACTGTATGTTTCCATGCTGGTAGGCGCAGGCATGGCCGCCATCGGCATCGTGAAATATCGACACGCTCGGCGCAACCCAGTCGCTCAACGCCCAACCTATGCGAAAGCGGTCGCTGCATTGCTGCTCGTTGCGCTTTATTTCGCGCTCCCGCTGCATCTCTACCTACGTGAACCTCTCCCCTACTGCGCCTTCAGCCCTGACGGACAGCAGTTAAGTATCTGTCTGGGAGAGAATGATGAGCGGATTATTGTGGAGTGATGG # Right flank : AATTAAACGCGCCGAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCTCACTGCCTGACACTGTTTAGGGAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACACTGCTACAGACTAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCGCAGCTGATTCTCGGCTATCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAAGTGCGGTTGATCAATCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACCCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 172722-170472 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDVY01000003.1 Pectobacterium versatile strain PB69 PB69LOC_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 172721 28 100.0 32 ............................ AGATGCAAGGGGTTAGGCTAGCCGTGCTTTCA 172661 28 100.0 32 ............................ AGATGCAAGGGGTTAGGCTAGCCGTGCTTTCA 172601 28 100.0 32 ............................ ACGAAACCCTGGAACAATCCCCGACAGCAGTC 172541 28 100.0 32 ............................ TCGACCAGCTGGGCCGCTCCCAAACCGGTAAC 172481 28 100.0 32 ............................ GACTTCGGGCCTGTTGGTGAAGACGTTGTACA 172421 28 96.4 32 A........................... ATACACACGCGCCGCTACCGCCGCCAATGCTG 172361 28 100.0 32 ............................ TGAAACAGATTTGCCATCATGGTCAGGAATTG 172301 28 100.0 32 ............................ TAATGCCTACATCGTGGGCATTGTGAAATTAA 172241 28 100.0 32 ............................ TGCCAAGAATCACAGAGCGAACGGTAACAGAG 172181 28 100.0 32 ............................ TGTCGGTGGCGTGGTATTCTCTGGTGTTGGCG 172121 28 100.0 32 ............................ CAACCGACAGGTAATGACCGCAATCCCACTGT 172061 28 100.0 32 ............................ GGCGCGGGTAGCCCTGAAATCCAAGTCTGAAA 172001 28 100.0 33 ............................ GCAAAGGGAATAGCGCCATCGGCATGGGTCACA 171940 28 100.0 32 ............................ GCATAGTGTCGCGAAATCGCTAGATAGAACTC 171880 28 100.0 32 ............................ GTTTCTAAAACGGATTGATGAAGTACTGATCC 171820 28 100.0 32 ............................ TGTGATAATGCATTGCATGGTTGAAATTTTGC 171760 28 100.0 32 ............................ TACAAAGACATGATCGAAGCTGTTGGCAAAGA 171700 28 100.0 32 ............................ GTCACAATCTGTCGCCACTGCCCGTCACCGCA 171640 28 100.0 32 ............................ GGAATATATTAGCTCGTTAAACTCGGCATGGC 171580 28 100.0 32 ............................ GACTATGTAGCCCCAGCACTCGGCATGGAAAT 171520 28 100.0 32 ............................ AAAACCTGTCGCAGCGAAATCATCGCTCAGAC 171460 28 100.0 33 ............................ CTCGCGCTTCATGCGCGGGTCGTAATTAGCGAA 171399 28 100.0 32 ............................ GCTTGTAGCTGGCGTACGCCAGCGCCGCTCTC 171339 28 100.0 32 ............................ GATCCTCCGTGGTCATACCGTGACAAAGCGAA 171279 28 100.0 32 ............................ TGTATCAAATCCTTTAGCGATGGCGCGCATGG 171219 28 100.0 32 ............................ GCCGTTACCAACGTAAACCCCGCATCGCTCGG 171159 28 100.0 32 ............................ AGTGCCTCAGCGAATGGTGGAGGAACAGCGTT 171099 28 100.0 32 ............................ AGAGGCAATAGTTAGCGCTCAGGAGTCCACCA 171039 28 100.0 32 ............................ TCGCAGGGTGACCGCTGAATACAGAAAGTCGC 170979 28 100.0 32 ............................ GTGCGTAGCCTCCGGCCATGTAACTTGCTGGC 170919 28 100.0 32 ............................ ATTAACGAAATCGGGCAAGTGATTGCACATGT 170859 28 100.0 32 ............................ GCGTAAGGCTGGCTGGTTTGCCGAAAGCAGGA 170799 28 100.0 32 ............................ CAGAACCAGTCACCTTTCTGAACCAGTCAATG 170739 28 100.0 32 ............................ GAGATATACAGATCGGTAAAGACGTGCATTCG 170679 28 100.0 32 ............................ GACTTTTTTGTGTATCCACGAAACCGGGATAG 170619 28 96.4 32 ...........G................ AATCCGGTTGATACTCCAACTGTTGATGTTAT 170559 28 96.4 32 ...........G................ GTTAATTAGAACTCGCAATGCCAGCGATTCAG 170499 28 75.0 0 ...........C.C......T.C.TCC. | ========== ====== ====== ====== ============================ ================================= ================== 38 28 99.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCGGTCCCCAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAATAAATCGCAGGCTAACTATTTGATGAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGGAAAATGATGGCTGCAGAAAATATTACCCAGACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATAAGTTACCGCTGAGCTGAAAAAAAGGGTTTTTGCGGCGAAAATGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTAATCGGGCTACT # Right flank : CGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCCTTAAATAACGAATATTGATGGCCTTCTTTCGTAACGTTTTTAAGTAATGAGTTTCTTTTAGAGGGAATGAAAAATTGTGGGGTCGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGTCCTTATAGGGGAATAGCACGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAATTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAATATTCATGCCATATTGACTGCACAGGAAGCAACGTATTTTTTAAAGACGTTATGCACACCCAATCCTAATGACTCTTGGAAAACAGCAATATTTGGCTGTACCGATCCCATCTCGTCGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 181673-182239 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDVY01000003.1 Pectobacterium versatile strain PB69 PB69LOC_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 181673 28 92.9 32 ...........TG............... GAGTATGAACAGTATGCCGAGCGCGGGGAAGA 181733 28 96.4 32 ...........T................ GGCAAACGCAGATACGAGCGTTAATTCTGTAT 181793 28 100.0 32 ............................ AGATAATGCGTGCGGTATGGTCGCAGCCGTCA 181853 28 96.4 32 .....................C...... CACACACCTGCATGTGTCAGCACATCAAGTGG 181913 28 100.0 32 ............................ ATCATGCGCACCAAATAAAAATAACTAACTTA 181973 28 100.0 32 ............................ GACATCGTGGTGACGCGCACAGTGCGTAGATT 182033 28 100.0 32 ............................ AGTCGGCCGTAAATGAAAGATGCGACCGAAAT 182093 28 100.0 32 ............................ AAACCCATGAAGATTTCGGACTTTCCGACCAA 182153 28 89.3 32 .G.........T...A............ CATGCGCCTTGGTTGAGATCAGCTTTCTGAGG 182213 27 82.1 0 ...........T.C.......-....TG | ========== ====== ====== ====== ============================ ================================ ================== 10 28 95.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAGGCGCTCTCTACACTGGAGCAAACGACCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAGTGTAAAGCCGTACCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTGCGCCGACGCTCGGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCATTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACACCCCCGTCGCTGGCCGTTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGCTTTTCGCCAAAAAAGTCATATTCTCTTTAACAATCTGTTGGTTAGCGTAAAACTTTAAC # Right flank : GCTTATCAGGATGCGTCGCTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACTGTTCATCCTCCGGCACCAAGCGATTAAAGAAACTCTCAAAATCCTGCCGCACCGTAGGGTCGGCATTTTCGTTAATCGTTAGTGCCGCCGAGGTGTGCTTGATGAACACCAGCATCAGCCCGACGTTTATCTGACGCAGTGCGGTGACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATTGCCTTATTCCTGCTATCAGGCTTCACGCGCCAGAATAGGTCGCAGGAAGCGCGCA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //