Array 1 18884-18003 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030147.1 Leptospira mayottensis strain MDI272 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18883 29 100.0 32 ............................. GATATTACCAGTAAGCTCAAAAAATGTAGCAA 18822 29 96.6 32 ............................T CGACTTGAGCGTCTTTTTCTTTATTCCACCAT 18761 29 100.0 32 ............................. AAATCTATCAAGTGGAAGTCTCAGCGGATCTG 18700 29 100.0 32 ............................. CGCATCAGAACAATCCAATGAAGACTCAGGGC 18639 29 100.0 32 ............................. ATCGTGGATCGACTTTGCTTCCTTTGCCATCT 18578 29 100.0 32 ............................. TCCCGCCGGTTTAATTCATCAAACATTCACAT 18517 29 100.0 32 ............................. TCGCACCACTGCTGGAACCTGTCCATCGCCAA 18456 29 100.0 32 ............................. TTTATGAATCCACATCCAGGAGAAATGCTCGC 18395 29 100.0 32 ............................. TCTATGTTGACATTTTTTTATCTCCAATTCCA 18334 29 100.0 32 ............................. TGGTCACTCCTCGGATTTCTTTCTGTAGTCCT 18273 29 96.6 32 .........G................... TCAGTCGGGATTGTTCGGATCGAACATACGGG 18212 29 100.0 32 ............................. TAGGCTATAGCTATAACATTTATTGCCATAGC 18151 29 100.0 32 ............................. CAAACTGGCCAAATTTGACCAGTTTACGTTTT 18090 27 89.7 32 .............--.....A........ TTTTCCCATCCTTCGCTTGCGCGTTTCATTTG 18031 29 82.8 0 .........G..............C.TTA | ========== ====== ====== ====== ============================= ================================ ================== 15 29 97.7 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : GAAATGCTTTTTCAGGATTGTATGAAAACGATGCATTTTGTTCTATGCACACCCTCATTTCTGCTCAATGAACTGCTCAGAAATGCGATCGTCCCCACAAGTCTAAAATTTAAAGATCGAAAGATAAACCTATTCTAATTTTTTTATAACATTCAATTAATCTAATTCCGATATATATAATATTATGATAAATGATTTCTCTCTTTCCGAACAAGCTTGTTCCCAATCCTTTCAATATATTCAGTCTTCTTTCTTTAGATCCGAAATTCGTTTTTACGACGATTTGTTTCGCGAGATAATAGATTTTGAAGGTTTATCTTTAGTGCCCAAGCCAAGTCCAAGTCAGAAAGAACCTTAAATGATCTTTCAAGGTCCTTAGAAATGGCAGTTCTTCTTTTACAAACCTAATCGATTTTGTGAACAAAAATACAAGATCAGATCATCTTTAAAAACAAATTCTAAGATGACATAATATGTAAAATACTATACGAACTTTTAGC # Right flank : AAAGTTACAGAGAATAAAATTTATCTTTGTTAAATTGAGAATTTTTACAACGTAGAATCCATGAATTCAACTTTAAGTTTTTAATATTCCTATTTTGTGGAAATTTCACTTTCGCAAAGGTGAATGATGGACTTAGGAATTACGATCGGAACATAAAGAATATATCTTAAAAGTCCTTTGTTTAATCTCGAAAAACGAAGTTTCAAAACGGAATAATACTATTTAGAAGCCAAAAAGTTTGAAAAAGAGAAGTGGTAAACCAAAGATAATGATGATTTACTAATTTATAGCATATTGGAAATGATGAAATTGATATGCGGAATTTTATTGTCGTTTTAATTTTTACCGTATTTACTTTTTCCGGTTTATTGGCGAAAACTTCCGATTTCAACGGTGAATGTAAACCGAAAGAATGGATCTGTATTTTTACAACTCAAACATCTATGTAAAAGCAGGAGATGACGGTTCCAAAGCGAGAAACCTTCCTTATCGTTTACCTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 289512-290211 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030147.1 Leptospira mayottensis strain MDI272 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 289512 29 100.0 32 ............................. ACTTTCAGGAGTTTTTTTCCTACGACGTATTT 289573 29 100.0 32 ............................. TATTGGGATAAGATAACTGTTAAGCTTAATCA 289634 29 100.0 32 ............................. CAGAAGAGGCAAAAGAGAGACAGGCTGCAAAA 289695 29 100.0 32 ............................. ACATGAACCCGTCGAGAGGTTTTGAGTATCCC 289756 29 100.0 32 ............................. ACATGAACCCGTCGAGAGGTTTTGAGTATCCC 289817 29 100.0 32 ............................. GGCGAGGGCTACACTCCTGAGCAGGTAGAGGA 289878 29 100.0 32 ............................. TGACAGCTATTAAAGAATTGTCATTAGGATTA 289939 29 100.0 32 ............................. TTTGTTTATAAACGCAGTTCCTGAACTAATAA 290000 29 100.0 32 ............................. ACAATGTGGCCAGTGCTTTGTTATGGAGTTGG 290061 29 100.0 32 ............................. ATGATCTTTTCCCCGTCAGTTAACCCGAACCC 290122 29 100.0 32 ............................. TCGGCAACCGGTTTTTCGTTAAAGTAAATCCA 290183 29 86.2 0 ........................C.TTA | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.9 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : GAAATACTTTTTCAGGATTGTATGGAAACGACGCATTTTGTTCTATGCGCACCCTCATTTCTGCTCAATGAACTGCTCAGAAATGCGATCGTCCCCACAAGTCTAAAATTTAAAGATCGAAAGATAAACCTATTCTAATTTTTTCATAACATTCAATTCATATAATTCCGATATATATAATATTATGATAAATGATTTCTCACTTTCCGAACAAGCTTGTTCCCAATCCTTTCAATATATTCAGTCTTCTTTCTTTAGATCCGAAATTCGTTTTTACGACGATTTGTTTCGCGAGATAATAGATTTTGAAGGTTTATCTTTAGTGCCCAAGCCAAGTCCAAGTCAGAAAGAACCTTAAATGATCTTTCAAGGTCCTTAGAGATGGCAGTTCTTCTTTTACAAACCTAATCGATTTTGTGAACAAAAATACAAGATCAGATCATCTTTAAAAACAAATTCTAAGATGACATAATATGTAAAATACTATACGAACTTTTAGC # Right flank : AAAAGTTACAGAGAATAAAATTTATCTTTGTTTGAGATGCCCCCGTTTTTAGTACCAGTGTAAAGTGTCAAAATCCACTTAAGCAGAGCGTCTTAAATATTCCTCCGGAGTAAGTCCCCCAAGAGAACTATGTGGCCTTTCAGAATTATAGAAATTTCTCCAATCCTCGACAAGGCGCTGTGCTTCTTCAATATTCTTAAACCAATTTTCATTTAAACATTCGTTTCGCATTTTTCCGTTAAAGCTCTCGATGAAGGCATTCTCAGTAGGCTTACCCGGCGTAATAAAATGAATATCGACTCCTTTTTCAAAAGCCCATCGTAAAAAAGCTTTTGATGTGAATTCGGGACCGTTATCCACAACGATTTGTTTTGGCAGGCTACGGACTTCAGATACTTCATTCAAAATTCTTACTAATCGTTCCGAAGTGATTGAGAATTCCACCTGCGTTGCCACGGCGAATCGTCCAAAGTCATCGATGATATTCAATATTCTGAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1583117-1582661 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030147.1 Leptospira mayottensis strain MDI272 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1583116 29 100.0 32 ............................. CAAAACACCATGATTGTCGCCCATGAGTTCGT 1583055 29 100.0 32 ............................. TTACCGATTCCACGCCCATCAGAACGGAAGGG 1582994 29 100.0 32 ............................. GGATTCTCGGTTTACTGGAAAGTTGAAACGGA 1582933 29 100.0 32 ............................. TGAGGTCGATATAAATCCAAAAGTTATCTTAG 1582872 29 100.0 32 ............................. ACACCTGAAATAATTTTTCTTGGCTGGAAGAC 1582811 29 100.0 32 ............................. GCAATACGGGCAGAACTGAAAATTAAATTTCC 1582750 29 100.0 31 ............................. ATAATAAAATTGATAATAAAGAGAAAGAAAA 1582690 29 89.7 0 .........................G.TT | T [1582665] ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 CTATTCCCCACATGCGTGGGGTTGAACCG # Left flank : TACTTAAAAGAATTATTCCGGATATCAAGGAGTTGATTTATGGTGGTTTTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAGCCGGGCGTTTTTGTAGCTTCCATTAACGCTAGAGTTCGAGATCAAATTTGGAAAAAAATTTCCGAAGAATGGAAATCGGACGCGATCATGTTGTATTCGAGCAACTCGGAACAGGGTTACGGCATCCGCTCTCACGGCGATCCTTCTCGCGAGATTATGGACTTTGACGGTTTACTTCTAATGTCCAAACCCGATTCTAAACACGATCAGAAAGTAATCATGAGTGTTTCCGATTTTTCTAAGGTTACCGAAGACGAAGTTTCTCCTTTTTCAGATCTTAAAGGCTTTTTCAACGAAAAGGCAAACTCCCTTCTTTTAGAAGCAGATGATCCTAATGAATCTAAAGAACAGACATAATTCTTAAGACTCCTATACAAACTTTTAGC # Right flank : TCAATTCCTAACCGGTGTCGGATTTCTATTTTTTATATATGTAAGGTGAATCAGAGGATCAAATTTTTTACACGTGGATTACTAACTTTAACGATTGTACAAGTAACTTGGTCCGCAAAATCCGCTCAAAGATTATAAGCTGGAAAAAATCATAACGAAACGTATCGCAGAAGAACAAATCCAGAAGACATACAAGGAATCTGAATCTAATTATAAAAATTATTTCCTTTAAAGATTTCTTGAATTGTTTCAAACTTTAATATAAATTTTCCTTTTATCTAAGAAACTTAAGATTCCCCACCAAACAGACAAATGAAGAACCGCGTATAACAACGATGCAAGATACGGATCTGCAATGAAAACAAGTTTAGAAAAAAACCAGGTTTTGATCCCAATCGATTTTCCATTTTCTGACATGATTGTCCAAAGGTTGAGAGTCCTCGCGAGTATTCCGGAGCCTACAAAGACTAAAATCGCATTTTTACCGAATACGAGTAACG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1904805-1904039 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030147.1 Leptospira mayottensis strain MDI272 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1904804 29 100.0 38 ............................. TCGGGTCGCGACCCCGTAGGAGCGACACGTCCCGCGAC 1904737 29 100.0 32 ............................. AAACACATTTGCTTTTTGTGAATCATTAATAA 1904676 29 100.0 31 ............................. TAAAAAGTTCAATAGAAGTTCAAGCTCCTAA 1904616 29 100.0 32 ............................. GGAGATTTAACGTCTCCTATTCCGAACCAACC 1904555 29 100.0 32 ............................. GGGATAACGCGTTTGCCTAATACGTAATTTGA 1904494 29 100.0 32 ............................. AATCTCGATCTGTTCCTCACGGTTCGGTGTGT 1904433 29 100.0 32 ............................. GGAGAGAACGCGTTTGAAAAAATCAAACGGTC 1904372 29 96.6 32 ............................C TTGACAGTGACCGCACCCTTTTTAGTGAGCCG 1904311 29 100.0 32 ............................. TTTTAGTGTCGAACGTCGGGCCACTCGGCCCA 1904250 29 100.0 32 ............................. TTTTAGTGTCGAACGTCGGGCCACTCGGCCCA 1904189 29 100.0 32 ............................. GAGAGAGAAATCCGCAGGCTCTCGAAAATCTA 1904128 29 100.0 32 ............................. ACGGAGAAGTTCGATTCCCGGACGGAAGAGCG 1904067 29 89.7 0 ..........................ATT | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 98.9 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : CCGGATAATTGTGAATCTTGTTACGTTCGAAGTACTAATGCGATTCTTATACCGGTTCCAGATATTTCAATGAAAATTGATTTAGAGATATGAAAGACTCAACAGTTTATCGTAGAATGGAGAATCTTTTATATTTCAAAACGACAGTTCCTTGGAGAACTAACTCCGGTGAGATATTTTAGACAATCCGTTTAGAGGTTTTTCGCAATTTCAGTCGGTATTTTAAATGGGGCCATCTTACTTTTACTCTTTTCAATTTTGTTTTTGGCTACTTCCTTTTTTTCAGCAGAAAAAAGTCAGCGCGTTTTAGTTGTTAATGACAATCTTCAAACACGGATTCTGCACCGCATATCAGTGGGACTTGATTACGGGTAAAGTTGTAAAAAGCTTCCTTAGAAGCTCGTGTTCTTAGTAAGACGATTTGCCATCATAAATTAACTTGGACACGAAACCCAAAAATAGATTGCAAAATCCAGATTTATCCTATACAAGTTTTTAGC # Right flank : TTCAGTCAAAACAGATCAGTAATAAAAATTCGGGAATAGAATCCAATTTAGAACTTTCAGTGTAAAAAACTAAGAACCAGTCTCAAAACCTAAAAATGTAGGAACTCTTACCAATTTTAAACAAGCCGCACAAAAACGGTATAAACCGCCAATGCGACGTAATCTGTGGGAACTCCCACATTTTCTTAGAAACTTACCGGACACGAAAGATACTCTTTGAAGGTGTTGAGACGAACTCTAAAACAAGCATAAGGCGATAAATTCAAAAAAAACCTTTTCTCAAGTTAATCCCGTATTCCAAATACGCTTTGAGACAACAACTCATGTTCATCCAACCTTGACAGTTCATATAAGAACCGTCTAACGCAGATTGAGATACCTTCCAACCGGATTCGGTAATTTTCATAAGAGTATTGTTTTGATCCAAAGATTCGAAAATCATTTCCGTTTTGGTTTTATATCCGCCAACAGTTAGAAGCTCATTTTCACCCTCATAACTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 3861870-3861416 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030147.1 Leptospira mayottensis strain MDI272 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3861869 29 100.0 33 ............................. TTTATGAATCCACAATCCAGGAGAAATGCTCGC 3861807 29 100.0 32 ............................. TCTATGTTGACATTTTTTTATCTCCAATTCCA 3861746 29 100.0 32 ............................. TGGTCACTCCTCGGATTTCTTTCTGTAGTCCT 3861685 29 96.6 32 .........G................... TCAGTCGGGATTGTTCGGATCGAACATACGGG 3861624 29 100.0 31 ............................. TAGGCTATAGCTATAACATTTATTGCCATAG 3861564 29 93.1 32 .C...T....................... CAAACTGGCCAAATTTGACCAGTTTACGTTTT 3861503 27 89.7 32 .............--.....A........ TTTTCCCATCCTTCGCTTGCGCGTTTCATTTG 3861444 29 82.8 0 .........G..............C.TTA | ========== ====== ====== ====== ============================= ================================= ================== 8 29 95.3 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : ACCTGTCCATCGCCA # Right flank : AAAGTTACAGAGAATAAAATTTATCTTTGTTAAAAATTGAGAATTTTTACAACGTAGAATCCATGAATTCAACTTTAAGTTTTTAATATTCCTATTTTGTGGAAATTTCACTTTCGCAAAGGTGAATGATGGACTTAGGAATTACGATCGGAACATAAAGAATATATCTTAAAAGTCCTTTGTTTAATCTCGAAAAACGAAGTTTCAAAACGGAATAATACTATTTAGAAGCCAAAAAGTTTGAAAAAGAGAAGTGGTAAACCAAAGATAATGATGATTTACTAATTTATAGCATATTGGAATGATGAAATTGATATGGAATTTTATTGTCGTTTTAATTTTTACCGTATTTACTTTTTCCGGTTTATTGGCGAAAACTTCCGATTTCAACGGTGAATGTAAACCGAAAGAATGGATCTGTATTTTTACAACTCAAACATCTATGTAAAAGCAGGAGATGACGGTTCCAAAGCGAGAAACCTTCCTTATCGTTTACCTTT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //