Array 1 29357-29213 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLKE01000031.1 Escherichia coli strain MOD1-EC5627 MOD1-EC5627_31_length_47501_cov_32.0879, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 29356 28 100.0 32 ............................ GGAACAATCTTGCAAAGGCTGTGAAAGTTGGC 29296 28 100.0 28 ............................ TTCACAGGTAACATACTCCACCCACCAT 29240 28 78.6 0 ................A...A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 92.9 30 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCACTGGATAAAGCGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTATTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : CGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAACTTGTGCAGTATATCTACATCGAGACAAGTTATGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGT # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1206-3127 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLKE01000008.1 Escherichia coli strain MOD1-EC5627 MOD1-EC5627_8_length_121839_cov_29.9891, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1206 29 100.0 32 ............................. CTGGCAATGGATCGTATGAATCTTGCGATAGA 1267 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 1328 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 1389 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 1450 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 1511 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCGGCCTGTC 1572 29 100.0 33 ............................. GATATGGCAATGAGTAAATATACATATTTAAAC 1634 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 1695 29 100.0 32 ............................. CGCCCCTTTTTCAGATCCAATGCTGCAGGCGT 1756 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 1817 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 1878 29 100.0 32 ............................. GCGTCTCGAGCGCCGGACGATTCAAAACCAGC 1939 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 2000 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 2061 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 2122 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 2183 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 2244 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 2305 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 2366 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 2427 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 2489 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 2550 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 2611 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 2672 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 2733 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 2794 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 2855 29 96.6 32 ................A............ ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 2916 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 2977 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 3038 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 3099 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 28676-29314 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLKE01000008.1 Escherichia coli strain MOD1-EC5627 MOD1-EC5627_8_length_121839_cov_29.9891, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28676 29 100.0 32 ............................. AATGGCCGGGTGGTGATGGGTTCCCGTTCACT 28737 29 100.0 32 ............................. TGGCTGAGTACTTCGGCAAACGACACGGTGAT 28798 29 100.0 32 ............................. TGTTTTCCTGCAATAAAACGACGCTCGTTACG 28859 29 100.0 32 ............................. CTTTCCATGTACTCATCCTTACGATATCCAAC 28920 29 100.0 32 ............................. GGCGGGCCACGCTCCATGAGTTAAGGACTGTC 28981 29 100.0 32 ............................. CGAGCGCAACACGGCCATATTATTACCCCATT 29042 29 100.0 32 ............................. CTTATAACCGGCGGCAAAAATCGTCGCGTTGG 29103 29 100.0 32 ............................. AAATTGATCCCAGGGTGATTATCGTGGGGATC 29164 29 93.1 32 .T..........C................ ATTTCTTTAATTATTTAGCTGATGCTTTTAAA 29225 29 93.1 32 .T..........C................ GGTAAAAACACGGTCTGAACCGACATTCATGT 29286 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.4 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGTTGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //