Array 1 8859-9048 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMFV01000001.1 Phorcysia thermohydrogeniphila strain DSM 24425 Ga0181007_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 8859 35 100.0 44 ................................... TTTGCTGGGTTAATCCAAAGTTCTTCAAACTCCCTTTTACTCTT 8938 35 100.0 40 ................................... GCCGGCCTTCGGGCTCCTAACCCTACTCTTCGCGCCTCAA 9013 35 80.0 0 .....................C.G.AT...T.TT. | A [9042] ========== ====== ====== ====== =================================== ============================================ ================== 3 35 93.3 42 GTTGAAATGCCCGAAAAAGTGAGCGGGATTGCGAC # Left flank : CAGAATGACCGTTATTATTCCAATTGCCACAGCTATTGACGTTGTCATCGTGTAGTAGAGGAGAGCTCTCACTCCCACGCTTTTAAACTTCTCTATGGTTTTCATGTTTAAAATTGCGCTTGCTATTGAGACAATAATTAAAGGCAGAACGACCATTTTAAGGGCGTTTAGAAAGAGTTCTCCAATAAAGGCCGTCTTTAGAGAGAGCTCCGGCAAGAACCCTCCTGCTAAGAAACCCCCTACTACTCCAAGAGCCATGTAGGTCAAAAACTTTCCCTTTCTCACTCTTTACCTCCGTAAGTCTAACTCTGTGAAATTTTACCTTGTGATATAATTAAAAAAGTTAACTTTGGTCTTTGAAAGTTGAATAGGGCTAACGGGGCATAATTCAGCTTACTGAAACTTTTTGCTCTAATAGGCTCTTTTTCAAGGAGTTACAGAATTTGATGGAAATCTCAAGTTCTGGAGATATTGATTTTCAATGTTTCCAATTTTTTGCT # Right flank : CACAGGGAGAGTCTGAGAGGGGACAAAATTTCCTTCACCCTGTCAGATTTTTCTTTAGAGACTCGTTATCCTAAAAGTGAAGGCTAAAGAACGATTGAAAGGTGATAAGTTGGGCTCTGACTGGAAGATGAGAAAGTCCATCTTTGTGGTAACTCCATCGGTTGTTATTAAAAAGGACGGAAACGCCCTCATTTTTGAGCTAAAGGGGAAGAGGGAAAGACTCCCAATTGGAGTAGTTGAGCACCTTTTCCTCTTTGTGGGAATTGAAATAACGACAAAAGCTTTAAGGTTTCTTCTTTCAAACGGACGCTATGTCTTTTACCTTAATTCTTTCGGAAAACTTGTTGATCTTTCTGTTCTTAAGCTTTTAACAAGTAACAACGGTTTAAGAGCTCTCCAATAATAAATGGGAGGAAACTGTGAGACTGCGGAGTTCTTTACACTTCCGTCAGGCTTTTATCTCCCAGTTTGGACTTCTATTTAAAGACTGGAGGACAACT # Questionable array : NO Score: 5.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATGCCCGAAAAAGTGAGCGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 355589-355259 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMFV01000001.1 Phorcysia thermohydrogeniphila strain DSM 24425 Ga0181007_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 355588 35 100.0 36 ................................... TTAAGATTGTTAACTATACCTAACATTCACCTAAAA 355517 35 100.0 37 ................................... TCCAACTTCTCTCGTCCCATTTCCTCATCCCTAACCT 355445 35 100.0 42 ................................... GAAACGCAGGCTCCTATGCCTGCCTGTGCAAGAAGTTCCCCA 355368 35 100.0 40 ................................... TCTCGTTTACCCATTTTTCCGCAACGAGTTTTGATGTAAT 355293 34 74.3 0 ............TG........A-......TTCTT | T [355269] ========== ====== ====== ====== =================================== ========================================== ================== 5 35 94.9 39 GTTGAAATGCCCGAAAAAGTGAGCGGGATTGCGAC # Left flank : TCTGTGTTTCCCGTTATGAAGTCTACCTCCTTTACCTTTTCAACTTCTTCCGGGTAGACCTCAGAGTAACAACCCGTTGCAACAATTAGAGCTTTTGGATTCTTCTGCTTTGCCTTCCTTAAAGCTTTACGGGACTTGGCGTCTGCCGTTGACGTTACCGTACAGGTGTTTACTATGTAGATGTCTGCTTCCTCGTCAAAGTCAACGACCTCGTAGCCGGCCTTTTTGAAGAGCTCTTCCATGTAGGCCGTCTCGTGGAAGTTCATCTTACAGCCGAGTGTATAGAAGGCAACTCTCTTCAACGGAGCTCTCCTTTTAGAGTTTGCTTTGTTATAATCTAAAAAGTTATTGTGGTCTTTGAAAGTTGAATAAGGTTAACGGGCAAAGTTAGGCTTGCTGAAACTTTTTGCTTGTAAGGGTTGATTTTTAGCGAGTTATAGAATTTGATAGAAATCTCAAGTTCTGGAGATATTGATTTTCAATATTTCCAGATTTTTGCT # Right flank : TCACGGGGAGGAGTTTTAAGGAAGGGGAAAAGCAGGTCTCATACTTTTAAGGGGGGAATCTGAGGGGGCTATGTCTCCCTCACTACTGAGAGTAGTTTAGTTGAGAAAGGAGGGAGTTCCCCACTTTCTTCAGGGGTTCAATTCCTACCGGTTCTTTTTTAAAGAGCTCCACAGTTACTACCTTCTTGCCAAAAATCTTTTCAAATTCTTTACAGTTCTTTTGACACCTGTTTAATACAACGAGTTTTACGTTTACTCCACTTGTTTCAAGCTCTTTTATCGTTCTCCTTGCTATCTCAATCGGCATTGAGTCCGGCGTTGTTACAACTCCAAAGGTTGTTATTTTTTCGTCTAAGAGCTTTTCCCTTAAGAAGAGAACCTGTTCCTTTCTCCTTTTAAGTATCTCTAAGACTGGGTCTTCCTCCTCTTTTCTGAGTCCTGCCATCTCCTCGTAACGGAGGGCTTCTTCCCTTAGGTTTATCAGCCTTTCAAGCCACTTT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATGCCCGAAAAAGTGAGCGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 123279-122806 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMFV01000002.1 Phorcysia thermohydrogeniphila strain DSM 24425 Ga0181007_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================= ================== 123278 29 96.6 37 ..............C.............. TCTTTTCCACTACGATTCTGATAGGAGGCTCGGGTTC 123212 29 100.0 37 ............................. GCAATTGCAACAATAAAAGCCCTTTCAAGCTCCTCAG 123146 29 100.0 35 ............................. TCCATTTTGTCTATCACGTAACCCGTCACCGGAAC 123082 29 96.6 38 .........................T... TCTTGTGGTATTTTCCATCTTCATAGTCTTCTTTTAGT 123015 29 96.6 36 ..............C.............. AGTTGTTTCTCCAAGTAGATTAGGTTGGATAAAGTT 122950 29 100.0 87 ............................. CTCCTATACAAGAGGCTATTCCAGTCAATACCCCATGTTGAAATGCCCTGACTCGTAAGCATTGAGGATTTCATTACTCCTTGCTTA 122834 29 89.7 0 .............G...........TC.. | ========== ====== ====== ====== ============================= ======================================================================================= ================== 7 29 97.1 45 GTTGAAATGCCCTATAGAGGGATTGCGAC # Left flank : AAGCTCATAGAAAAGTTCAAACTTGACTACGCCGTAGTCACAAGGAGCGAAAAGGGACTTTCTGTTGTAGGGAAGGACTTTGTTAAACACATACCCACAAGGGCTAAACAGGTTTTTGACGTTACAGGGGCAGGCGACACCGTTATAAGCGTTTTTACCCTTGCAATTGCCTCCGGTGCAACTCCAGAAGAGGCCGGAGAAATTGCCAACTTGGCCGCAGGAGTAGTTGTAGGGAAACTCGGAACTGCAACCGTAACCGTAGAAGAGATAGAAGAAGCAAGAAAAACGCTAAATATTTGAATTTAACAACAAAAACTGCAGCAAACCACGCTTTCTTTAGTTTTACAGATACCCCTTGTCTCACAATAGGTAAACAAGGATTTTTCCTTACTTCCTTATTCCTTACTGGAGATTCTCTGCAAAAAACTTCATTTTCCGTGTTATAATAGTTTGTGAAGGCCGTTGCCGTTCTTTGACAAAAGCTGAATAAGGACTCCTTG # Right flank : CCAAAAGGGTCAAACACTCTGGAAGTTTTTGGGAGGGGGCAGTTTTCTTGATAAGACGTTAAGAAGTTTATAAATTAACCTGCAAAACTTCCCAGAAGGGAAAGGTAATGAACTGCAAGATATGCAAGTCTAAAGGGAAGAGAACCAAAGCAGTTATATACATAAGACACCACCGTTTAGCCCTGTGTGAGGAACACTTTATTAGCTGGTTTGAGAAGCAGACCCAGAGGACGATTAAAACCTTCAGGATGTTCTCCAAAAAGGACAAGGTTTTAGTCGCCGTTTCAGGCGGTAAGGATAGCCTCTCCCTATGGCTTGCCCTCCACCGTCTTGGATACGAAACCTACGGCTTCCACGTAAGCCTTGGCATAGAGGAGTGGGAGTTTTCAAGAAAGTCCCTTGAAATTTGTCAGAAGTTTGCAGAGAGGATAGGAAGACCTTTAATGGTCTTTAACCTAAGAGAAGAGTTCGGCTATTCCATAAACGAAATTGCAAAAGGT # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.77, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATGCCCTATAGAGGGATTGCGAC # Alternate repeat : GTTGAAATGCCCTACAGAGGGATTGCGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 162374-161157 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMFV01000002.1 Phorcysia thermohydrogeniphila strain DSM 24425 Ga0181007_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================================== ================== 162373 35 91.4 43 ............C.........CG........... TGCTCTATGCACTTGTGAATGGCCTTGCCAAAGGCGGTCGCTG 162295 35 97.1 40 ...................C............... ATAGTTTTCCTTCTATTCTTGTAATCAGAAAAAATTAAGT 162220 35 97.1 42 ...............G................... CGTTCCAAACGTAAATGTTTTTTAGTAGTCCTCTTTCCTTCA 162143 35 97.1 50 ........................A.......... ACTGCATAAGTGCCCGGAGGAAGAGTATAAACGACTGGATTAGCAAGAAC 162058 35 94.3 53 ..................CC............... AAAGCTCTCCTACCGATATAGACGGGAGCTGTGGGACGGAAGAGACTCCCACA 161970 35 94.3 37 .........T...........A............. CCAGCTATCAGCTCCATGAGCTTCCCGTAACCGAGAG 161898 35 100.0 45 ................................... ACTGTGGAAGTCTCAAAGAAGTCCTTCCAAGAAGAATCAGTTTGA 161818 35 91.4 39 .......C.....T..G.................. CTCTGCACCACGACCAATGGCACAATAAAGCTTGTCTCG 161744 35 97.1 51 .............G..................... TTATATTCATTCACCGCTATTGAGACTGCAACAATCTTTGGAGAGTATTCT 161658 35 80.0 44 ........................A..T..TAAGT CTTTCAAAGGAGAGAGTCTGGGGGGGATGATAATCCCCCCTCAC 161579 35 88.6 45 .GCC..............C................ ATCTTATTAGCTGTTATTATGTATTCATCATCAGGTTGCCTCCAA 161499 35 100.0 43 ................................... TTAAAAACGGGTTTTCAATCTCCTTTCCTTCCAAGACTACAAG 161421 35 94.3 44 ....................T...........A.. GCGTTTATAGCGGTGTACTTTGCTATCTGTTCACCTGAAACATC 161342 35 94.3 42 .....................A..........A.. ACTCTAGCGGGTACTTCTTGAACCGCCTTCTCACCGTAGCTG 161265 35 91.4 40 .......C...........C............A.. TTCCAATCGGTTATGTCGCTCATAGAGTTAACGAAAGCAT 161190 34 74.3 0 C...........G.......A..C...-..CTA.G | ========== ====== ====== ====== =================================== ===================================================== ================== 16 35 92.7 44 GTTGAAATGCCCTAAAAAGTGGAAGGGATTGCGAC # Left flank : AATTAAGAAAGTAATTGGAAGGGAATTCCCCGGCCAGCCTGCAGAAATCCTCCTCGTCCTTGACGCAAACACGGGACAGAACGCAATCTCTCAGGCAAGAGCTTTCAAAGAGATAACAGACGTTACCGGAATAGCCCTCACCAAACTTGACGGAACAGCCAAGGGAGGAATCGTCATAGCTATCTGTAACGACCTCAAAATTCCCGTAAAACTTGTAGGAATCGGAGAAAAAATAGAAGACTTAAGGAAATTTGACCCCAAAGAGTTCGTTGAAGGGCTGTTTGAGAGCTCTACTTAAAAAAGCTGTGCTATAATTTGAATAAGCTAACTCCGTTCCTTGACAACCGAATAAGGCTAAGGGCATTTCAACCACCCGAACAAAGTTCAGCAAGGTGTAACCTTCTTTTGACTTTAAACTTTGCAATTCAACGAGTCACAGTTATTCATAAAGTTCTTTAGAACGGGAAGCCCTTGATTTCCAATACCTAAAATTTTGACCT # Right flank : TTTTCAAAGGGGGAGTCTGAGGGGGATGATAATTCCCCCTCACGGATGACAATCCCCCTCACAATTGTCATTCTCCCTCACGGTTAATAAGTTATTTGGTTACGGTTAATAGTTTTTGCAGGAGCTCCCCTCATGTTCAGACTGCGTTCTGCAACGGCCGAAGAAATTAAATACTATTTTGAAGTTGTATACCCCGCACAGGATAGAATACTTTCGGCAATAGGAAAACACTTCGGAGATGCTTTTTACCTTACGGGAGGGACAGCCCTTTCAAGGTTCTACTTCCAGCACAGATTATCCGAAGACCTTGACCTGTTTACAGGAACTGAGAATATAAAGACAACTATTCCGAGAATCGTCAATTTAATAGAGAGTTCTGGATACAAAGTCGTAGTAGAAGCCTCTTCTGTTACTTTTGGGAGGCTTTTTGTCCTACTTGAAGGAAAGGAAAAGCTGAAAATAGACCTTGTAGCCGATTTCCCCTTAGAAACTCCAAAAGC # Questionable array : NO Score: 5.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATGCCCTAAAAAGTGGAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 3 195269-195430 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMFV01000002.1 Phorcysia thermohydrogeniphila strain DSM 24425 Ga0181007_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 195269 29 100.0 37 ............................. TTGACCTGCTCAGGGGTAAGTGTTTCAACTCCGTCTG 195335 29 100.0 38 ............................. GTTTACTTTTCCTGTGGGAGGGAAAAGTGCTATACAGA 195402 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 3 29 100.0 38 GTTGAAATGCCCTATAGAGGGATAAGGCG # Left flank : TGGGGCTCGGTCTTCTGATAATTTCTCAAAAGCCTTCCTCTGTTGACCCTTTGCCGGTTTCTCAGTGTAACACGCTTGTCCTTCACAGAGTAATAAACCCGGAGGATTTGAGCTTCGTTAAAAGCGTCGGAGAGGCCATATCTGAGGAAGACATTGAGATGCTTAAGACCGTTGAGAAGGGAGTTTCTATAGTCAGCGGAACGGCTTTAAAGTTGAGGAAAAGCCTTTTGGTTAAATTCAGGGAAAGGCTTTCTGCGGAGGGTAGGGAACATCCGAGACCGTTACAGAGAGTTTGGAGCTCCTGAAACTTTCCTCTGCAGTGAACCACCTTTTTGAGCTTTTAAAGCGGAAGGGTTTGCGTTACAAGGGTTATCCGTCAAATTTTTATGTTTTTTAGACTCCCTACTTCCGATTCACTGCAAAAAACTCCCTTTTCTGTGGTATAACAAAAACAGAAAGACATTGCCGTTCTTTGACAAAAGCCGAATAAGGACTTCTTG # Right flank : GGAAAGTCGGCTTTTGGGGAGGTTTTAAAACTAACTTATGGTTATGAAACGGGAGAGTTTTTCAAGGAAGGGGAAGAGGGATAGGAGCTCCACAACATCTTTAAAAGGTCTTTTAAGGATAATCTCCGACGCCAAGTTTCTTGAAACGCCGGGAAGGTAAGTTAGGAGTTTGTAGGAGACTTTGTTTATGTCTATCGGAATCGGGATTCCTATGACAGACCTTTCTCTGTGGCCTACTACCACTACGTTTACGGTTTTAAAGAGTTCTAACTTTTCGGGGATTCTCACTAAAATAGGGTAACTTCCTATCTGCCTTCCGAGTGTGTGCTCCCCGTCGTGGGCTTCTAAGAGGACGTCCCTTATTACGGTTCCGACCGGAAAGACCTTCTTCATCATCGGAAGGTCAACTTCTTCCCTTACCCACTCCTTAAACTTTTCAAACTCCCTTCTAAACTTCGTTTTTGGTCTTTTGACCATTTCAGAAATTGGCGTTCCTTCAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATGCCCTATAGAGGGATAAGGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //