Array 1 411969-411660 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059564.1 Alysiella filiformis strain DSM 16848 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 411968 36 91.7 34 .AT..T.............................. ACAAAAATGTTAAGTATGATTACAAAAGATGACG 411898 36 100.0 34 .................................... AATCCACAAAAGAATTACGTACCAAATTCACACA 411828 36 100.0 34 .................................... GTTCTACGTTCCGCACATTCACCCCTGCTATGGC 411758 36 91.7 24 .............................C.T.A.. TTGACTGCTGATGGCATTGGTTTC TCA [411729] 411695 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================== ================== 5 36 96.7 32 GTCTTAATCCCCGATGAATGGGGCAATTATTCCGAC # Left flank : ATTCGGCAAAATACTTTTTCATGATGTTTCAAACTTTCAAAAATAGATTGAAAAAAGATTGCTCGCCACACAAAAATGGCAAAACGGCGCACATCATAGCCATTTTTCAAGGGTGCTGGCAGGGGGATTTACACGCTTTTGCTTGATTTCACGGTAAAGCGCATTTCAAGTGGCTTTGCAGCACCCCACAACATAGACAGAAACCTTTGCAAAACCTACTTTTAAACTGACGTAGGGGCGGATTTCATATCCGCCCTTTTTTCAATTTATTGATAAGAATGAAAATTTCTGCGAACCTAAACGGGACAGATATGAAATCTGCCCCTACAAACCGCGTTTTGCAAAGGTTTCAGACAGCCACACACCAAAACGCATTGAATATTCAGCAAATGGATTGTGTGGCGCGGTTACTGGGTTGGTATTTGGTTTTTTGCTGCCATTGTAAACATGGCAAAAGCAGCCTGAAAACGCATTGTTGATGTTTTCAGGCTGCTTTTTTT # Right flank : CGCACCCTTGTGTTTTTCTTTCGTAAAATCAATACATTGCAAGCCAAAATTTTTAAGCCAAAAATCTTCACAAACGAATATACTTTTTAACAAATTCTTAACACCAAATGCAATCGGAATCCAACTTTTCAGTCGGAATAATTGAAGTGCGGATATTACACTTCTTTACATCATTTGGCAAGTTTTTGCAGGCAGCCTTGCGCTCATTTGCCCAATCTGGCTGCCTGAATCGCCTTTATGCAAACCAACTTGGGTGCGCCCAATCTAATTGAATCGCCAAATACATCAACAACATAATCAACAACACATACGCCACCAAAGCCACCGCCACCCAAATCAGGGTTTTTTGCCACGATTGGCGGTTGTAATCATTGCCTATGGCATTGTCCACAAAATCCATGTGTTTTTTGCCCAATGTGAAAAACCACGCCAGCCAAACCACAAGGTGCAGCCACCAACCCCAATCCACACCCGTTAAAATCGCAATCATCGCCAGCACC # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.12, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCCCGATGAATGGGGCAATTATTCCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 462990-459650 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059564.1 Alysiella filiformis strain DSM 16848 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 462989 28 100.0 32 ............................ GCCATTGCTGAAAAAGATGGCAAAGTATTAAC 462929 28 100.0 32 ............................ TATTTTGTGGATTATGAAACCGCCATTGCTGA 462869 28 100.0 32 ............................ GACAAGAAGCCATTGCTTTACACATCAAACAA 462809 28 100.0 32 ............................ AAAAGACGCGAATATTCAAAGGTTTAACCAAT 462749 28 100.0 32 ............................ ACATCAAGAAAATCAAAACCAACAAAGCCACT 462689 28 100.0 32 ............................ AACTCCCCCAAAGAATTTGGCGTAGGCACGAT 462629 28 100.0 32 ............................ GTTGCAAAAATTTGAACCAATTTCAGGCTGCC 462569 28 100.0 32 ............................ GCATCAAAGTCACTTGCGGCTTTTGCGTTGCC 462509 28 100.0 32 ............................ TGAAACCATTGCGCCTGAAAATGTTAAAGGGC 462449 28 100.0 32 ............................ ATATTGAAAAACCTTTTAAATGTATTGTTTAG 462389 28 100.0 32 ............................ TTTCTTTATCATATTCGGAACAAATAAAGCCA 462329 28 100.0 32 ............................ CACAGGCGGACGGCTATTTAGACGGTTTGGAA 462269 28 100.0 32 ............................ TAATTCGCCAAGTTCACAACTCGTTGCATATC 462209 28 100.0 32 ............................ TTGAAACGCTGCCTGAAGGCATCACAGATAAA 462149 28 100.0 32 ............................ TGAATTGTAAATTCGCCATAAAACATTGAGAT 462089 28 100.0 33 ............................ ATTTAATCGCACCAAAAACGTGCCAGCGCGGAC 462028 28 100.0 32 ............................ TAAATCAACAACAGGAGACCAAATGGAAACTG 461968 28 100.0 32 ............................ GTCTGTAAACAAGTAGCTTGGGACGTGTGCCA 461908 28 100.0 32 ............................ GTATGGGATTAACTCTTCGGGTGTCGGGAATA 461848 28 100.0 33 ............................ TAATTCACAAGCTCGCCAAATGGTTTTTTTGTC 461787 28 100.0 32 ............................ ATCTTGTTGCTCCGCCTTAATGCTGATGCGGA 461727 28 100.0 32 ............................ CCTTGTTCAGATGACACCGCCAACTCAAAATC 461667 28 100.0 32 ............................ ATTGCCGATAATGATTATGCGGGGGCGCAAAT 461607 28 100.0 32 ............................ TAATCTGCACTTCGCCAAATCCCAACCGCCGT 461547 28 100.0 32 ............................ GTCAATCAGCATTCCGCCATACGACATAAACG 461487 28 100.0 32 ............................ GAATTGAGCCGTCCGCGCGTGGCGTATGACAA 461427 28 100.0 32 ............................ TGAAAAACTGGGAGAACGGCACGACTGGTGCA 461367 28 100.0 33 ............................ TGAAATCGGCGATATTGGCTTATGTGCCTTTGC 461306 28 100.0 32 ............................ AATCGGAAGCTGAATTGATTGAATTAAATAAA 461246 28 100.0 32 ............................ GTTGCCACAAAATCCGCCAAGCTGCTGCCCAT 461186 28 100.0 33 ............................ GAATTTACCAACACGGCGGTGGCGGTCATAGAT 461125 28 100.0 32 ............................ AACGATGTGGGCAACACGGGCGTGGGCAAAAA 461065 28 100.0 32 ............................ AAATTGGGGCGATGTGAAGGGTGCGAAAGTCC 461005 28 100.0 32 ............................ TGAAAAGCTGCCCGATGTTTATTTCATTTTTT 460945 28 100.0 33 ............................ TGTAATTCAATCTTTGCCAATGGCGTACTCAAT 460884 28 100.0 33 ............................ ATTTCGGGGCGCAGTTTGACCGCCAAACTGGGC 460823 28 100.0 32 ............................ TTTCAGGCAGCCTAGCCGCCTTTGCGTTGTTA 460763 28 100.0 32 ............................ TTAACGAAACTGTTATCAGCAAATACAATATC 460703 28 100.0 33 ............................ ATGACAGCACCGTTGTTTGCTTTACGTAATTCC 460642 28 100.0 33 ............................ TTGACGAGTGATGCGCAAAACGAAGCCTTGACC 460581 28 100.0 32 ............................ AGCGCAAGAACAAATTGCGCCAAATGTGGTAT 460521 28 100.0 32 ............................ TTCGCCGTATACTGCGGCGTAAACAAAAGCAA 460461 28 100.0 32 ............................ GTCAGAAATTTGCTCGCCCACAACCATGTACC 460401 28 100.0 32 ............................ TGAAAACCAGCGTCTTTGAAATCTTCCAAAGA 460341 28 100.0 33 ............................ CCAAAAAAAAACGCCCAAACAGCCGCCAACATC 460280 28 100.0 33 ............................ ACTTCGGGCGCAAGCACCGAAACCGTATCACAT 460219 28 100.0 32 ............................ AATATCAGCAAAGCGGCGGTCAATCCGTACTA 460159 28 100.0 32 ............................ GAAAGCGTCAGCACGTTTTGAAATTCGCGCCC 460099 28 100.0 33 ............................ CGAACAACTTTATCAATTCCGCTTTGATAAATT 460038 28 100.0 32 ............................ ATAACCGTACCTGCCGATTTTGCCCCAGTTGT 459978 28 100.0 32 ............................ GCGATTTGGTTGATAAAATTTTCAACGGTATC 459918 28 100.0 32 ............................ TTTTTCGCCCCATTTGTACCGCCTGTACGCCT 459858 28 100.0 33 ............................ CAATGAAGTGGTTTTAACATATTCAGACCGCAA 459797 28 100.0 32 ............................ ATTGAGAACGCACAATCAAGATTGGGTTATGT 459737 28 100.0 32 ............................ GTTAAAGTAATCTCGCTATTACTCATTTACTG 459677 28 89.3 0 ....................T.C.A... | ========== ====== ====== ====== ============================ ================================= ================== 56 28 99.8 32 GTTCCCGACCGCATAGGTCGCTTAGAAA # Left flank : AAAAAGGGGCGTGCCACCGCCCCCACAAAATCCCACCATCACGCCTGCACTTGCCAGAAGTCGCATTGCCGCTTGGGTAATGGAAGTACCTGTACCAAGCAAAATACAAGTGGTATTGGCAATGGGAATATTGTAATAAAGATTTTCGTTTTTGCCTTCGGTTAAATACAAAACCCGACCGTCTTTTTGCATCACTCGGCAATGCTCCAAATAAAACAGATTGGCTCGTTTGGAATGCAAAATGGCTTTGAGTTCGGTGGGTTTGAGGGTATTCATCGTGAAAACCAAAAAATGTTAAAGATTGTTAAATTTAATCATGGGTAATGATGGCTGTCAAGGCAGTAAATGGAAAAATGAGTGATGTTGAACCCTTTATTTTGAGATAAAATTAAATTTATTTAAAATCAATTAGTTAAGAATAGGCGGAAAAACATTGGTTCACAACACCAAAATGCCGTGAAACACTTGATATGGCTGTATTGAGCCATTATAATTGCCTA # Right flank : ATTCAGTCTGAAATTTTTGCAAAACTCGGCTTGTGGGGTCAGATTTCATCTCTGCCTTGTTTGGGGTTGCTGGCATTTTCATTTTTATCAATCAATGAAAGAAGGGGCGGATATGAAATCTGCCCCTATGTCAGTTATGAAAGTGGGTTTTGCAAAGGTTTCAGGCTGCCTTAAACGTGTTTGATGCGTTTTTAGGCAGCCTGAATGTGTTTTATCTCATTGGTTTATTGCTTTTTTGCGCGTTCCGCCATCATTTGGTGCAAGGTTTTTTCGGCTGGTTTCATGGGTGTGCGGAATTTTGTCCAATCCAACTGCCAAGCTGGTGTCAAACCCCTAAATGTGGTCGCCGCCCAACCAAAGGCACGATACGCTTTTTTCCCCGAAAAAATCCCATCAAACACACGCCACGCCAATTCTTCGCCAAATGAATGAGACGCGCCTTGCCCTTTAATGGGGTGCGACACGGTTTCATCGGGGCTGCGTTGGGCTTCCACACGCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCGACCGCATAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 3 670722-667148 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059564.1 Alysiella filiformis strain DSM 16848 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 670721 28 100.0 31 ............................ CTCGCCCCACCCAAACGCAAAGACTGAATGA 670662 28 100.0 32 ............................ TGCGTTGTATGCGCCTGCAACCCAATCAAAAT 670602 28 100.0 32 ............................ TTAGCATAGCGATGCTCACCAAAACCATCAAA 670542 28 100.0 32 ............................ GTCGCCTGACAATAATTTACCATTACCGAAAG 670482 28 100.0 32 ............................ TCTTGTTTTTCAAAGGCACTTGCCCAAATTCG 670422 28 100.0 31 ............................ TGATGATTTGACTTTCTCATTCAATTCATTT 670363 28 100.0 32 ............................ GATTGAAGAAGGCAGTTACATCGTTATTGACA 670303 28 100.0 32 ............................ AAACCGTCCAAATACGTTGCGCCCAAACGGGT 670243 28 100.0 32 ............................ TTTTTGGTCAAAACGTGGGGCTTGGGGGGTAT 670183 28 100.0 33 ............................ TGCTTGCATGATTTTTTTCCTTTCAGGCAGCCT 670122 28 100.0 32 ............................ TCCGCCAGCGCATATTTGTCCAATTCAGGATA 670062 28 100.0 32 ............................ AATTTTTGTGTTTGGGCGATAAGGCGTGCACG 670002 28 100.0 32 ............................ AAGCCCCGAAGTTCAGGGATTTCTGCGATTAC 669942 28 100.0 32 ............................ GTGCCGTCCTGTTCGGTAACTGTGTCGGCTAT 669882 28 100.0 32 ............................ TTTGGCGCAATGCAAAAAGAAGCAGGCGCAGC 669822 28 100.0 32 ............................ ACCAAATGCGCCAGCCACTTCCAGCAAAGACG 669762 28 100.0 32 ............................ TGTGGACAAATCCGCAAATTTAACGCGATGAT 669702 28 100.0 32 ............................ TTTGATTACGGCATCAATGCTCACATCCAGTA 669642 28 100.0 32 ............................ AGTAACTCATCTGGAATATTTGGCTTAACATA 669582 28 100.0 32 ............................ TTGAACCAGTTTACGGTTTTCGTAACCATGCT 669522 28 100.0 32 ............................ ACAGGGAAACACAGTAAATGCCACAAGGCAAT 669462 28 100.0 32 ............................ ACAGGGAAACACAGTAAATGCCACAAGGCAAT 669402 28 100.0 32 ............................ AGCTCTCTAAAACTTACTTTCTCATACTCAAT 669342 28 100.0 32 ............................ TATAAAAATTGAAATAGCAAAATTCAACAATG 669282 28 100.0 32 ............................ AACGCCTGTTTTTTGATGCTTTCGTGAACTGC 669222 28 100.0 32 ............................ TGAACGCGAATTATTGGCGCAAGTCCAAGCTG 669162 28 100.0 32 ............................ GCAGTCTGTGCTGTTGCTTGCACCCATGCTGA 669102 28 100.0 32 ............................ CATAGTGGTCGGCTGGCACGATTAAAATGGAG 669042 28 100.0 32 ............................ GTACCACTTGGCATAATGAAACCGCAGTACAT 668982 28 100.0 32 ............................ GTTTATGTTTTTCAGCAGTACACGCTCGGAAC 668922 28 100.0 32 ............................ ATTTCATCATAGCGAATGGCATAGTTGTTTGC 668862 28 96.4 33 .C.......................... AAAGCTATCACGCATTTGACCGCCCTGCTGGAT 668801 28 100.0 32 ............................ ATAACATCACACCATTTTCTTCTGTTAGAACA 668741 28 100.0 32 ............................ TTGTACAGGTAAGTCATCTCTTCATATTTGAT 668681 28 100.0 33 ............................ CGATAGCCATGCTTTGCGTGATGATTTGTTGTT 668620 28 100.0 32 ............................ ATGGTTTCATAATCTGTATTGCTACTAATCAG 668560 28 100.0 32 ............................ ACAAATGTTACAAGCTGTGCGTGATGAAATCA 668500 28 100.0 32 ............................ AAAAATGTCATAATAAACAAGCCAACTACCCA 668440 28 100.0 32 ............................ TTACCACTCAATCCGCCCAGTTGCCCATTATC 668380 28 100.0 32 ............................ AACTTGGGTCTTGTGATGTTCAGGACGCAATC 668320 28 100.0 32 ............................ CTATATCGCCATTTTAAACTTACTTTTAAGGC 668260 28 100.0 32 ............................ AATTAAAGCAACAGAGCGAGCCAATTCGGTTT 668200 28 100.0 32 ............................ TTACCAAGTTGGGGATTGCGAGCCAACCATAC 668140 28 100.0 34 ............................ GCCCGACCACCATTGTTAATGATGGGGATATAAT 668078 28 100.0 32 ............................ AATCCTGTTTTTTTAAGGCGTTGTGCATGGTC 668018 28 100.0 32 ............................ TTCCGATTGGTGCTTTTTCGTGAAAGCAATCA 667958 28 100.0 32 ............................ ACCATGATGTTGATTAACGTGCCGTGATTGAT 667898 28 100.0 32 ............................ AATTTGACCGAATCGGGCGAATGCGCTGCACC 667838 28 100.0 32 ............................ GTCTGGATTATAATCCAACAAACGACCGCTAA 667778 28 100.0 32 ............................ GATGTAATCGTGTAGCGCGGCTCCCATTTTGC 667718 28 100.0 32 ............................ TATTCAGCCCAATATGTTACAATCTTTGCAAC 667658 28 100.0 32 ............................ GTATTGGATTCACGATAAAGCTGAACTGTTGC 667598 28 100.0 32 ............................ TATTTCATTTTCATGTTTCCGTTGCATTTGTT 667538 28 100.0 33 ............................ TATGCGATTGCAAATGAGTTGCTTATCCTATCC 667477 28 100.0 33 ............................ AATACTGGCTCAGTCTGGATAGGGATGCTTGCA 667416 28 100.0 32 ............................ AGTTCATCTTTGAAAAATGCCTGAAATTGCAC 667356 28 96.4 32 ...........................T TCAAATTTGTGTTTCAGGTAGCCTTGCAATTT 667296 28 100.0 32 ............................ TTCGGTTGGTTGCTTTGCTTGATAGCCCACCC 667236 28 100.0 32 ............................ TCACAATCATCAAATGTAATGTTTTCTGCTGG 667176 28 96.4 0 ........................A... | C [667150] ========== ====== ====== ====== ============================ ================================== ================== 60 28 99.8 32 GTTCCCGACCGCATAGGTCGCTTAGAAA # Left flank : ACAGCCAAGCGATTACCTTGAAATTGAAACAAAATTTGCCCATTAGCGAGATTGAGCAAATCATCGCCAGCGCCAATGCGTGGACAAAAGTCGTGCCGAACACCAAAGAAGCCAGCATTCACGAATTGACCCCTGCTGCGGTTACGGGCACTTTGACCACACCAGTGGGTCGCATTCGCAAATTGGCGATGGGCGATGAGTTCATCAGCGCGTTTACGGTGGGCGACCAGTTGCTGTGGGGCGCGGCAGAGCCGTTGCGCCGTGTGTTGCGGATTATTTTGGGCAATTTGGATTGATTTTATTGATTTGAAATTGAGCCAAAAATGGGTTCAGGCAGCCTGAAACGTGATTTTGGGATATGGCGAGACCCAATGTTTGAGTGCAATTTTAAAAATCCAATAAAATCAAAATATTAAAAACAATGGCAAAAACATGGGTTTTGCCAGCCCAAAGTAAAGCCAAGGCTTGATAACTGGGGCATTGCTGCTTATAATGCCCTA # Right flank : ATGAAAAAGGGGCGGATGGGAAATCCGCCGCCTCTACATCGGTTTATCAAGTGGGTTTTACAAAGGTTTCAGGCTGCCTGAAATCATTTCTCTTCTTGCTGTTGCGCCAAATATTCGCCGCCCCAACGCACATAATTGGACGATGAATACAGCAAATGTTCACGTTCCGCATCGGTTAAGGGGCGCACTTTTTGCACAGGCGCACCCATATACATGTAGCCGCTTTCCAAACGTTTGCGTGGCGGCACAAGGCTGCCTGCACCAATAATCACATCGTCTTCCACCACCACATCGTCCAAAATGGTCGCGCCCATGCCCACCAACACGCGATTGCCAATCGTGCAACCGTGCAACATCACATGATGCCCCACCGTAACGTCATCGCCAATGATGGTGGGCGAACCTTCTGGCTTTTTCGCACTTTTGTGGGTAACGTGAATCATGCTCATGTCTTGAATGCTGGTGCGTTTGCCAATTTGAATGCGATTCACATCGCCACG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCGACCGCATAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 4 1463299-1464639 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059564.1 Alysiella filiformis strain DSM 16848 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1463299 32 100.0 35 ................................ TGGCAAAGGGTTTGTACAATCCGTATAAGAGTACA 1463366 32 100.0 33 ................................ GAAGACCCTGAGCAAATCTCAGGTGCAGGTGTT 1463431 32 81.2 21 .....................AA.A.G..AA. CTCATCGCTGATTATTGCGAA CAAACA [1463453] Deletion [1463484] 1463490 32 100.0 36 ................................ AAATCCAGTTTTGAGTGTGTGATGTCTGCCATTGTT 1463558 32 100.0 34 ................................ ATAGGTTGGAGTGGGTATTGTTTTGATAGTAAGA 1463624 32 100.0 34 ................................ GTAAAACCATAATGGCGCAATTCGGATAACTTTT 1463690 32 81.2 19 .......................TTC..TTA. ATATGTAATTCTTAAAATA ACATTT [1463711] Deletion [1463741] 1463747 32 100.0 35 ................................ TTTGTCATAATCAATTTGACAGCTCTCAATAAACT 1463814 32 100.0 35 ................................ GCACTATCAACATCAACGATGGATAACATTAATGT 1463881 32 100.0 34 ................................ ACTTGGTAGCCCATTTTTTGCCTTTCGGTTTAAC 1463947 32 100.0 33 ................................ CCTGTGCTGCTGTTAAACCTTCCCCATACAAGT 1464012 32 100.0 33 ................................ TTGGTTTATCGTGGCAAATTGCCCTTGCAAATT 1464077 32 100.0 34 ................................ GAAAGACGCTTTTGCCAAAGTGCATAAAATTGAT 1464143 32 100.0 35 ................................ CTTCAATCTAAATATCGTTTAAAACACGGTCTCTT 1464210 32 100.0 34 ................................ CAAAATAGGCTTGAATGGGTGTGTATTCGCCATT 1464276 32 100.0 34 ................................ TGTCGTCAAACTGCTTTTGTAGCTCATTGCGTAT 1464342 32 100.0 34 ................................ ACTGGGCGATAAAACAAGCGATTGGGTGCGCTTT 1464408 32 100.0 35 ................................ TTTTCACAAAAAACACAATCACCGCTAAAATCAAA 1464475 32 100.0 34 ................................ AACAGCACAAACACAAACGGTTGTATCAGCAAGT 1464541 32 100.0 35 ................................ TTGGTTTATATTCAGATACACCAGTAAAAATATTA 1464608 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 21 32 98.2 33 GTTTAAACACACGGGTACCCGTGGGTACCCGA # Left flank : ACGATGAACGGTTTGTGTGCAAAACCACTTTCATCAATATAAACCATTTGATAGCCCATTTTTTTGTAAAAACGCAATTTTAAATGGTACTGATTTCGCTGCTCTGGTTCTTGTTTTGGGTGTTGGCTCGTCTTTTTTTAACTGAAATTTTGAGCTGTTTGAGTGCGTAACAAATTGCACTTGCGGTAACACCCAAACGCTTGGCACGTTCGTATTGGAAGGCATCAGGGTAGTTTTCAACATCTTTTAATAATGCTTCATGATTAACTTTTAATGGTTTGAATTGACGTTTTTTTCTTTCAATCCCATTTCGTTTCCATTGGTTAATGGTATGTGTACTGATGCCATAAAATGCGGAGGCTTGACGTATCGTCATACCGCTTGCAACGCTTTTTAGGATTTGTTTACGTAAGTCTTGGGAGTAAGCCATGATAAATTTAATATTGTAGTGATTTTAATTTTGGTTAGCTATAATTCATCTTTAAAAAAATCTTGAAACT # Right flank : AAGCCCCTTTGGGAAGCCTTGCTGCATCTGGCTTTGAGAACCTGTTTTCGCTAGCCACCCTAAAAGGCGAAACCAAAGTATAGCATAAATGCACCTATATGCTGTGTGCTAAATTGTGATTTCTTGATTTTTAAGGAACTTTTTTGATTCGCTAAACCCTTGGGTTTTGGCTGTGTACTGCACGTTAGCGATTTATAAAATGAGGGTATCTTGGTAAATGTCTATGGCTTTTTTGGCACCGTGATGTTCTACTTTGCCGCGCCATTTGCTGCCTAAATGGTAAAAACGCAAACTGTCGGTATGGGGATTGTAGGTATTTAACAGTTTGTTTTTTAATACAACCCATTGGTCGGGGACTATATCGCATTCAAACACGGAATATTGTACGCGAACGCCATAGTCTAAACAATGTTCGGCTATATGACGCAGTCGTGTGGCTCCGCCTTCGTCTGCTAGGGATATGTCGTAGGTGATGAGCATGAGCATTTTGTTTCCTTTTG # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACACACGGGTACCCGTGGGTACCCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA // Array 5 2205101-2204928 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059564.1 Alysiella filiformis strain DSM 16848 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 2205100 33 100.0 39 ................................. GACATTACTTTTCTGAGGATGTTTAATGCACCATTTAAA 2205028 33 97.0 35 ......G.......................... GACTCAGAGTTATACTCTTTTACGACATTATCTTC 2204960 33 97.0 0 ..............................A.. | ========== ====== ====== ====== ================================= ======================================= ================== 3 33 98.0 38 GTCAGAATGATTGCCCCATTCATCGGGGATTAA # Left flank : CATGCGGCGCGTGTCCACCATTGCCCAGCTTTATTTTAACGCGCCCTTGCAAGCCGACTATGCCGCATTGAGCGCACAAGCCGCCACCCTGCGCGGCGAACACACATGGCATTGGCACGATTGGCAACGCTATTCCAACCGCCAACAGCAAATGATGAAATTGGGCGGCATTATGGGCGAAAGCGTGTGGCGCGATGTACCCCGCGAATGGGCGGCATTGTTGCACATAGGGCAATGGCTGCACATTGGCAAAGAAACCGTGTTTGGATTGGGTGGCTACCGCGTTCAGGCTGCTTGAAAAAATAGGGCTTGTCAATTTGAGTAAATTTGCGTAAAATGCGCGACACAATCATTCTGACAAAGGCTGATGTGATTTGTCTCGTTCTGGTTGTTTTCTCTGTTCAATTTTGTTAAAAAGTATATTCGTTTGTGAAGATTTTTGGCATAAAAAATTCAGCTTATAAGTATATGATTTTACAAGGTGAAAATAAGAGAGTGCA # Right flank : AAAACCAAGTCAGGCAGTCTGAAAACAAAACACCGTTTTCAGGCTGCCTGATTTTTTGCCCCCATTTTGATGCACACAAATTTGTTTTGCTCACGCAATGGTCGCGTTTTGGCGTATGATTTCATTTTCAAATTTCAAACAAGGGAATGGCAAATATGGCAACTTTATTTGTGTCGCGCCACGCTGGGGCGATTGAATGGATAGCGCAGCAAGCCCATTGGCACATTGACGAAATCGTGCCACATTTGGATTTGGCACAAGTGAATGCGGGCGATGTGGTGGTCGGTACGCTGCCTGTGCATTTGGCGGCGGCGGTGTGTGAAAAAGGGGCGCAGTTTTACTTTTTGCAAATGCCCCAACAGTTTGCCACGCGCGGCTCGGAATACAGCGCAGCAGAAATGACGGCTGCTGGCGCAAGTTTGGTGCGTTTTGATGTGAAAAGGATTGCAGAATGAAACAGAAAATTTTGGTTGCTGTAACAGGCATGACACCGCAAATTG # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAATGATTGCCCCATTCATCGGGGATTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //