Array 1 513280-517286 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046246.1 Tetragenococcus halophilus strain YJ1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 513280 28 96.4 33 .A.......................... GATCGCCAGCCATTGACTTGAGACCCTTCATAA 513341 28 100.0 33 ............................ CTGATATAAGATAGCCAATCGTAACCATTGATG 513402 28 100.0 33 ............................ ATGGTCTGATATAAAAGCTAATACATCTAGCAA 513463 28 100.0 33 ............................ GCTTGTTCATTCGAGGTCGTAGAACGATTGTCA 513524 28 100.0 33 ............................ TGTTGTGTGCTAGCAGATTGGCCACCGCCACTA 513585 28 100.0 33 ............................ GGATGCGCAGGCAACACAGGCACATCATCAATG 513646 28 100.0 33 ............................ TTAGCAAGTTTAGTCAGGAAGGGAGTGTTGTAG 513707 28 100.0 33 ............................ GTAACGCAATCAAGTCCGCATCATCATAGCTAG 513768 28 100.0 33 ............................ CCTTGTTTAAAGTCTATGCTCTCGCCTTTGCTA 513829 28 100.0 33 ............................ TTAGTCAGAGCATAGGTATTATGCGCGGAACAG 513890 28 100.0 33 ............................ AAAAGCCAACCCTCTTTCGTTAAATTTCGCGCG 513951 28 100.0 33 ............................ TTAAAATCTTTAATTTGTAAATCAACATTACCG 514012 28 100.0 34 ............................ TCGAAGAAGATAGAAGCACGAGAGTGACATCCAA 514074 28 100.0 33 ............................ GAGGTTGAAAGAACTAAGAAAATCAAAACCGCA 514135 28 100.0 33 ............................ ACAATGTAGAAACATTAAAGAGCTTGCAAAATA 514196 28 100.0 33 ............................ TAAAAGAAATTATAATACCAATTCTCAATCTTA 514257 28 100.0 33 ............................ GGAAGCTGCACCAGCAACAGCACCTATAGATAG 514318 28 100.0 33 ............................ ACGGGTCTTAAAGATGAGCAATTAACGAATTTA 514379 28 100.0 34 ............................ TTAGATTTTAAATTGAAAGTAATTGATGGTGATG 514441 28 100.0 33 ............................ AATTCAGACGTCCTTTTTATATGGATGATGTCA 514502 28 100.0 32 ............................ TTTGTACAACCATTAAAGCCCCGTTTATGGGG 514562 28 100.0 33 ............................ AAAGCTGTTATTTCACCTAATAAGTTTTTAACA 514623 28 100.0 33 ............................ TTATTATTTTTGCAAGTGTTAGCACTTGTTTTA 514684 28 100.0 34 ............................ TCACACTATTGATTTGATCATCTGTTAAACCTAA 514746 28 100.0 33 ............................ TCATCCAGTTGGGGCTGAATTTCCTCTTGAATA 514807 28 100.0 33 ............................ TTTCGTAACACCATATACCTATTATCTTTATCG 514868 28 100.0 33 ............................ AACGAATTGCTGGCACAACACATGACGGTTTCA 514929 28 100.0 34 ............................ CGAGATTATAGTGGATTACAGCAATACAGAGAAA 514991 28 100.0 33 ............................ CAGACGTTGCAGCTGGTGCAATGGCTGCAGGCG 515052 28 100.0 33 ............................ TCGCCCTTGTGAACGACTTCCGCCCAAATATCG 515113 28 100.0 34 ............................ TTTGTAGTCGTCAATCAATTGATTAGGTAGCTCA 515175 28 100.0 33 ............................ TTATACCACCAATGAGTATGTGAATATCAATGA 515236 28 100.0 33 ............................ TTGAGTTCAACAAGATTACTAGCCCCGTTGTCA 515297 28 100.0 33 ............................ TTAATCACTTGAATGAATCAGAAATGACCTATA 515358 28 100.0 33 ............................ TAGCCATCTATGATTAATCTCACTCATCGACTA 515419 28 100.0 33 ............................ TTTTAGACCTTGTTCCGTTAGCGCTTGTCTGTA 515480 28 100.0 33 ............................ TAATCATTGTGTGGTCAGCTATTAAAAACACCG 515541 28 100.0 33 ............................ GTCCTCATCTTCGGTTAAAACATCGTCACCTAA 515602 28 100.0 33 ............................ AAGTGCAGTTACAGATCCGGAACGTATTAAATA 515663 28 100.0 34 ............................ TGTGGCCAAGGAAAAGATGGATAACTTTAAAAAG 515725 28 100.0 33 ............................ TCTATTAGGTCCGAATTTATTCGGTCCTTTTAA 515786 28 100.0 33 ............................ TGAAACGTGGATTGTCTGTCTTCGAGTCCGAAG 515847 28 100.0 33 ............................ ACAATCATTGATATTTATTATCTCCACAGCTGG 515908 28 100.0 33 ............................ CTATCTGTATTATATTTATAACGTATCGGCTCG 515969 28 100.0 33 ............................ CTTTCGGCGCTATCGGCTCAGGTATGCAAACCG 516030 28 100.0 33 ............................ GCATTAAATTTATTATATAAAGAATACAAAGAA 516091 28 100.0 33 ............................ CCCGTGCGGATGACTTAACTTCTGTTTCTTTTG 516152 28 100.0 33 ............................ ACGATGGAAAGCATTGACTCCACGCTAAGAGAG 516213 28 100.0 33 ............................ TTTATCCAATGTTGATTTAGGCAATCGGTTTGA 516274 28 100.0 33 ............................ TTAATATGTTGTAATAGAGCGTCTTCGGCTTTA 516335 28 100.0 33 ............................ TGACTTGCGCCAATATGAGCATTTTTCTGTGCG 516396 28 100.0 34 ............................ TCGCATAGAAACCCGTTCAAGATCATCTCTGTCA 516458 28 100.0 33 ............................ CTCCGGTTTTTATACCGTTCCACACCGCCATCG 516519 28 100.0 33 ............................ AGAAAAGAATTCCCCAAAAGGGGGTGATGACAG 516580 28 100.0 33 ............................ CTGAAATCAAAGCTGCAGTCCATAATGCACTTG 516641 28 100.0 34 ............................ TTAAAGACGGATGAGCCTTTCGGTAGATAAGTAG 516703 28 100.0 34 ............................ TCAGATTCCGTGAATTTATGATACTGTTCTAACG 516765 28 100.0 33 ............................ GGCTCTCTAACGATTTGTTATTCGCTCCAGGCG 516826 28 100.0 33 ............................ TTGATTGTCATACCTACAATGCGCAAATCCTCA 516887 28 100.0 38 ............................ TTCTTCCCTTAAAGACACCGCCGTTTTCACTTCGTTGA 516953 28 100.0 33 ............................ TTAAAATCTTTAATTTGTAAATCCACATTACCG 517014 28 100.0 33 ............................ TGCAAAGTGTAGGATCTGCATTTACTAGTCATA 517075 28 100.0 33 ............................ ACAAGCGTAAGTTTAGAAACGCTAGGGGAAAAA 517136 28 100.0 34 ............................ GTTGGTGATGATACAGACGCCCCATATTGCGCTG 517198 28 100.0 33 ............................ CTGTTACAAAGCTGTTTACAATACCATCAATCA 517259 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 66 28 99.9 33 GGATCACCCCCGCTTATGCGGGAAAGAC # Left flank : AAAAAACTTGGATTTGTTTCATTGCTGATAGTAAAAATAGACTAAATAATAGACACAAAAGCGCCAAAACGTTATTCAGAAATGATAGGTTTACCTACTAAAAAGATGACGCTTTTTTCCACTTCATTATAGTCGTTGTGTAAAATGATAATATCGTTTTTGCAGTTTTTTATTACCACTAGTCCTCATTATCCAACCATTTTTCTATTGATTCATCAGTTATATATTCCTTTAGTGACAATAATTCTTCATTCCTTACTATATTATTTTTTATTCTTTCCCTCTCTTGTTCTGACAAAGAAACATCAAATGGAATTTTCCCATCTGCAACAATACGTTTAAAATACATAGTTATTGCCGCTGTCGTTGTTAAACCTAGTTCATCTAAAATTTGGCCTACTTTATCAGTAACTTTTTTATCAATCTTAACCTGAACAGTTTTGTTATCTTTTACACTCATGATAAAACACCCCTATTAATAATATTATCATTTCATTTTA # Right flank : CAGTTAAAGATCCCTATAAAAACAGTATTTTTAATTCATTGCTTTTAAAAATTTATTCACTTTTGTCGATAATTGATATATGATTTTTGCATCTTCCAAAGCACGATGGGGTACGTAGTCATCAAAACCATAACTTATTAAAGCCGTTTTTAACTTATAATCAGTAAGCAACATTTTTTCTCGTTTAACATAACGAATTAGATCATGAGGTTTATTTGATAACTGGAATAGGTCAAAATCCTTCAAATACTTATTCAAAAAGCGAAGATCAAAATCAATACCATATCCAACTATAGGAAAATCTTCTATGAAATCAACAAACTCTACTAATGAATTCTTTAATGGTTGCCCGTTTTTGGCTAATAAATCTTGAGTAATACCAGTTAACTTAGTAATATCTGATGGTAATTCCTTATCATATTTAATTAATCGATGAAAATTTGTTAGTTCTCCTCCATCCATTTTGACCGCTCCGATTTCAATAATCTGATTATCATTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCCCCGCTTATGCGGGAAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 2 1034310-1032914 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046246.1 Tetragenococcus halophilus strain YJ1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1034309 36 100.0 35 .................................... CCAGTTGACTTTTTCCATTAATTTATTTTTTGTGT 1034238 36 100.0 36 .................................... TTTAGCCCTGACCTTTGCCCGTCTCCGTCTAGGTAT 1034166 36 100.0 37 .................................... CTCATAAGGGAATAACTTCCCGACTGTATAAGTAGGA 1034093 36 100.0 34 .................................... TCTTGATCAGCGTTAAATACTTTAAATAAAGTCA 1034023 36 100.0 36 .................................... TACACCATATTTTTATATTCAGTTGGTTTTTCTCTT 1033951 36 100.0 35 .................................... ACAAGTCCATTTACTGCCAGTGGTTGAAAAGCAAA 1033880 36 100.0 35 .................................... AAAGATAATGGAGAAACGACCGACACAATAATTGC 1033809 36 100.0 36 .................................... TCCATGTCAGAAGCAATTCGTTCATACAATCTTTTA 1033737 36 100.0 34 .................................... ACATTTCGACGTGTAATGGGAATAGCGTCATAAT 1033667 36 100.0 34 .................................... AAACATTTTCCTTTATAAAGCACCATGATATAAA 1033597 36 100.0 38 .................................... CTGTTTTTGGTGCGTCTTCTTTATTTGCAAAAGCAGCA 1033523 36 100.0 35 .................................... TTATCAATTGAACCATCAGAAGCAGCGTGACTAAA 1033452 36 100.0 38 .................................... ATGATTTTCATTAATTCACTAGCTACTTTCAACGTCAT 1033378 36 100.0 35 .................................... GTTAAATCACTGGCTAACAAGTCTTTAATTTTGTC 1033307 36 100.0 35 .................................... TTAGTGTTTCTTTTATGCTATTCATTATTTAGTTC 1033236 36 100.0 35 .................................... TTTCTGAGCTGGCCATAAGTTGTGCCTAACAGCAT 1033165 36 97.2 35 ................................T... GGCTTCTTTAAATAATATAATACTGGGTAGCTTTG 1033094 36 86.1 34 ....A...T.C...T...........A......... GAAACCAAAATGAAATTGCAGCTATTGGAAAAAC 1033024 36 88.9 38 .............T....CT........G....... CTATGTGTTGCTTTGCTTTAATTCGTTGCCAGTTATCA 1032950 36 94.4 0 ..............T....................T | T [1032919] ========== ====== ====== ====== ==================================== ====================================== ================== 20 36 98.3 36 AATAGATACCTAACCCCATCATTAGGGGACGAGAAC # Left flank : TTGAATACAGAGGGATTCGAAGACGTCATATTAAAATTACAATATTCTCTAAAAAAAGCAGGGAACGAGTTAAATACAGATCGATATTTAAGTCTGCCGCTTTATGCTGAAATTATTCGTATTATTCAACCTGATAGTTCTTTATTAAAACTAATTGATAAAGTAAATGGGGTAAATACTTTTAGAAATCAAGTTGCACATGGATTTAAGTCAATTAATATGAAAAATTCTAGAGTGAAAGATCTAGCAGAAACTTGTTGGATGCTATTATTAATCGTTAATGATGTAGATGAAAAATGGCGTTCCTATTTTGAGGATAAAAATAAAGTTTTTAAAGAAATGATTAGCTATTGAGCAGTTTTTTTGTAAAAGAGTATATCCGCTCAAATAATTGTCAAAATTATGACCGAGGGCTAATCTTTAGAAGTAGTTTATGGTCAGTTTATGGACTAATGAAAAGTATTCTTATGGCTGATGTAAAAGCTTTTATGATATTATGT # Right flank : TAATATAATGTTTGAATCAATATAGTGAGGAGTAAATATAATGAGAGATTGTATATATGTTGAACACCAAAATTTTGTTTCTGTTGTAACTAATAGCTTTAAATTCGTTAATGTTGTTTCAAAGGAAACTACTTATATACCTTTTTCAGAAGTTGAATGTTTGATTTTTGAGAATGAGCTTAGCTATTTTTCTAAAAAATTGGTGTCTAAATGTATGGAAGAAAATATAGCACTATTATTCTGTGATAAGAAACACTCACCAGTAACCATGCTTACTAATGATTTTGGTCATAGTAATCGGTTAAAAAGGTTAAATCTTCAAATGTCTTTGGGTAATAAAGTGAAAAAACGTTTATGGAGGAAGATAGTTATTGGGAAAATTAATAACCAGGCGGTAAACTTGCAGTTGCTGACTGAAAATAATGATATGGGGAAAATGTTGGTCCTTGCTTCAAAGCAGGTAGATGAAGGAGATACTAAAAATCGAGAAGCTTATGCTG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATAGATACCTAACCCCATCATTAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.70,-6.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //