Array 1 6436780-6437776 **** Predicted by CRISPRDetect 2.4 *** >NC_017186.1 Amycolatopsis mediterranei S699, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 6436780 28 82.1 30 .GTT........A..C............ TGTCGTGTAGCGGGTGTCGTCGTCGTTGGG 6436838 28 85.7 30 .A...TT..C.................. CTGCCCGTGGCGGAACCTGATCGTCACCAA T [6436845] 6436897 28 85.7 32 .C......AT................G. GCGCCTTCGTCCCAGCTGGCCGGCTCGACGAT CT [6436901] 6436960 28 85.7 30 A.TT..................G..... CAGGGAGATCGACACGTCGGACAGCGTTTC 6437018 28 89.3 30 .CG..T...................... CGGAAGCCGGTTGAGCTTCGCGCCGCACCG 6437076 28 85.7 31 TC...T................C..... GCAGGCCGACTACGAGAAGCAGAGCCCGCAG TG [6437082] 6437137 28 82.1 33 .AGC......T..........T...... GATCCCGCAGTAGCGACAGGTGTCGCCGTCGCG 6437198 28 82.1 33 ..TT.......A.G.A............ GCACACGATCGGCGGTTTCACCCGACCTTCGCG 6437259 28 96.4 33 ........................A... CGCATTGGCTAGATTGTTCTGGAAAGTCTGATC 6437320 28 89.3 33 ..T..............T......A... CGTCTCGAACGTCGTGGGCGAGACGACGTGCTC 6437381 28 92.9 33 ..T..................T...... CGACTTCAAGCTGCGCCTGGTCACCCTCGGCGT 6437442 28 96.4 33 ............A............... GCCGTTCGGGTCGCACTCGTACGTGGGCAGATC 6437503 28 100.0 33 ............................ CGTCACCTGCCCGCCGGGCTACACCAGCCTGTT TG [6437526] 6437566 28 92.9 34 ...............A..A......... GGACGGCGTCAAGAACTGGTACGACGAAGTGGCA 6437628 28 92.9 32 ........T..A................ TACGTGTACGTTGGCGCCTACGGAACAGGAAC 6437689 28 100.0 32 ............................ CGCTCGGGCAGCTCAACCTCGCCACTGTCTAC 6437749 28 85.7 0 C.T..T...A.................. | ========== ====== ====== ====== ============================ ================================== ================== 17 28 89.7 32 GTCGTCCCCGCGCACGCGGGGCTGGTCC # Left flank : GTCTCCGCGCACGCGGGGCTCGTCCGCGCCGAGCAAGCGAAACAGCGGCGACAAGATCGAGTTGTCGCCGCACAGGGCTGGTCACCCACCCGACTGCGCCAGGTCCCGTAGAACGGGTCACCCCCGCAGCCTCGAGGCTGGCCCTATCATCGACCCCGTAGCTGCTGGAGCGCCAACAGTCCCCTCGTCGCACGCGCAGGCAGATCCTGACAAGTTGGGCGATAACTTCAAGGAGGTAACGAGCGTCCTTGATTACCGCCAACTATTTCTCCGCAGCAGAGACGTGTGGGTGCGACGCAGTTCCTTGCGTCGCGCCGACCGTGAAGCATCCGGAAGACGCGATGACCACCGGTCTGGCGGGCGCTCACTGGAGGGTGTCACGGTGAACACCGAACAACTTCGTCGACTAGGCAAGATCAGCATCGGCAGACGCTGCGAACACCCGAGCCAAACTGAATAGAAAACACTGTTTCACTTGGTAGAGTCGCAGGTCAGCAAGA # Right flank : CCTCGATCGAATGTCCGAGGAATTTGACGCGGCCCCGGCACCGGCTGTCGAAGTCGTTGCTGCGGCAGGGTTGCTCTATGACGGCACTGCATGGACCGGGGCACTGAAGCCTGGCTGCGGTCGCTGACCTTTGACCGGGTCGGGGTCCGGCTGGCCTTCGAGGAGGCCTTCGACGCGGTGCTTGCTACGCGGGCTCAGCGGGCCCGGCTGGACGCTGCGATCACCGAACTGGCGGCGCCCCCGGTGTTCGCGCCGGTTATGGGGCGGCTGGCCTGCCTGCACGGGGTAAGCACGCTGACCGCGTTCGGCCTGGTGACGGAAATCGGGGACTGGCGGCGGTTCACCGGTGCGTCGATCGGCGCCTACGTCAGTCTGGTGCCCGCGGACTCTTCGAGCGGTGAACACCGTCACCAAGGAGCGATCACCAAGACCGGTAACTCCGATGGCCAGCGGTTGCTGGTCGAGGCCGCCTGATACCACTGCAAACGCTACCGGCTCAG # Questionable array : NO Score: 4.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.70,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6438603-6438875 **** Predicted by CRISPRDetect 2.4 *** >NC_017186.1 Amycolatopsis mediterranei S699, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6438603 28 96.4 33 ........T................... GGGAGCACTCGCATGACGACCACGGAGCCGGCG 6438664 28 100.0 33 ............................ CTGGTTGATCCGGATGTCCCAGTCGTCCACCGC 6438725 28 100.0 33 ............................ CACGGTGGCGGTGGCCTGCTGATACTGGGCGTC 6438786 28 100.0 33 ............................ AGACGGTTGGGGCAACCTGAAGGCGGCCGGCCT 6438847 28 89.3 0 ..C....................A..A. | G [6438864] ========== ====== ====== ====== ============================ ================================= ================== 5 28 97.1 33 GTTGTCCCCGCACGCGCGGGGCTGGTCC # Left flank : GACTGGCGGCGGTTCACCGGTGCGTCGATCGGCGCCTACGTCAGTCTGGTGCCCGCGGACTCTTCGAGCGGTGAACACCGTCACCAAGGAGCGATCACCAAGACCGGTAACTCCGATGGCCAGCGGTTGCTGGTCGAGGCCGCCTGATACCACTGCAAACGCTACCGGCTCAGCCGGGAGCTGATCCGCCGCCAGGACGGCCAACCACCGGCGGTCCGGCAGCGGGCGGAGGTCGGCAATCGGCGGCTGCACTGCCACTGGACTCGCTTCGAAGCCCGCAGCAGACGCCCCGCCGTCAGCGCGGTCGCCGTCGCCCGGGAACTGGCCGGCTGGTGCTGGAGCCTCGCCACCCATGGAACCCGACACGGGCTGACTCCCCCGAAACCGCCGGCGGGAGACCGGCATGCGCAGACAGGCGCGAGGAACGACCCGCGATACAGCGATGAGCAGCACCGTCCCCAGCGAAAGTGCAATACTCGCCCCAAGACAGGTCAGCAAGT # Right flank : CTACAGGGCTAGATCTCTAACATCTGGAGCCGGAGGCGGCGTCTGACGTGGTGTCGTCGGGCGTCCGCCTGGTGTTCGCGGCGCCAAGCAGACCAGCGAAGGCCGTGGTCGATGGCGTGATCATCTTTGTCGGCGAGGTTGAACAGGTGTCGGATCTCGGCGATGGTGAGCGCGATCAGGTGCCGGGTTCGGGTGGTCAGGGTGTCCGTTCTGTCCACAGGTGGAGTTCTTCTTTTTTTTGCTTTGTGTCTCATGACTGCGAGGAATGCCATGGCGAGCATCGAGAGGGTGATGTGCCGGTACCAGGCGTGGTAGAGGCGGACCTGGTAGTTGTCGAGCCCTGCTTCGTTTTTGGCTGCTTCGAAACATTCCTCGATCGGCCAGCGGGAACCGATGACGCGGACCAGTTCCGTCAGCGGTTCCCGGTGCGGGTTGTAGCAGTGAAAGTAGGCGATTTCGCCGTCTGCGATGTTCCGCCGGAACACATACTGGTGACCGTC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCGCACGCGCGGGGCTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCACACGCGGGGATGGTCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 6441416-6442221 **** Predicted by CRISPRDetect 2.4 *** >NC_017186.1 Amycolatopsis mediterranei S699, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================= ================== 6441416 28 82.1 33 ..TA.......ACG.............. CACGATGCCGCGCTCGACGAACACCTCGTTCCC 6441477 28 100.0 33 ............................ CTCGGCCAGCACCCGGCGGAGGTTCCGGATACT 6441538 28 96.4 33 .........A.................. GATCGATTCGCTGAGGACCTCCGGCAGCACGAT 6441599 28 89.3 33 ............C..CT........... GGTGAAGGGCCTCTCCCCGGCCGGGCAGCGGTA 6441660 28 100.0 33 ............................ CCACACCGGCAAGCCCGAGGCGATCCTCACGCA 6441721 28 92.9 33 ........T....T.............. CGACACGACGGCGAGCCGGTCGTCGCGTTCCTT 6441782 28 92.9 141 .......................CC... CAGGACGTCGCCGGACTCCCCATCGAGAGGCGGGCTACGCCCGAGAAGGCCCGCCCGACCTCATCACCGCCGAGTCGTCCCGTCAGTAGCGAAGTGAACGAGAAACACTGTTTCCAATGATAGATTCGCAGGTCAGCAAGT 6441951 28 85.7 33 ..T........ACG.............. CTGCACGACCGGCCAATCGACCGCCTTGTAGTC 6442012 28 82.1 33 ..T........ACG...A.......... CACGAAGTAGATGCCCGCGTGCTGGATGGTGAG 6442073 28 89.3 32 ..T........AC............... CATGCCGGTCACACCGCTCGGATGCCGCCGTT 6442133 28 89.3 33 .........A..C......A........ TTGGGTGGCCGACTTCCTCGGCCTGGACAAGCT 6442194 28 92.9 0 ............C.........C..... | ========== ====== ====== ====== ============================ ============================================================================================================================================= ================== 12 28 91.1 43 GTCGTCCCCGCGTACGCGGGGCTGGTCC # Left flank : TTGCATCTGGGCTGTGAGCAGGGTCAGAAGCCGTTGTCGATCGTATTGACCGCCGGGCAGCGTGGCGACAGCCCGCAGTTCATTCCTGTCCTGCGTGGTATCCGGGTGCCCCGGCTGGCCGGTGGTGGGCGGCCGCGCACCCGGCCGGATCGGGTGCTGGCGGATAAGGCTTACACCTCTAAGGCAAACCGGGCTCACCTGCGCAAACGTGGGATCAAGGCGACCATCCCGAGCAAAACTGATCAGGACGCGCACCGCAAGGCCAAGGGGTCGAAGGGCGGCCGGCCACCGGCTTTCGACCCCGAAACCTACAAGCAGCGTCACGCCGTGGAGTGCGGTATCAACCGGCTCAAACGCCACCGCGCCGTAGCCACTCGTTACGACAAACTCGCTGTCCGCTACGAAGCCACCATCCACATCGCAGCCATCGACGAATGGCTCTGACCGACTTCGATACAGGCCCTAGGTCCCGGCTGCCCGATCCAGTGGTGCCAGTCGTC # Right flank : CGGCGGAGAGCGACAATAGCTCTCCGCCGAGAGCACTATCTGAACTGCGTTCGCTGCCAGTTGGGGTTAAAAGTGAGGTAACCGTGCGGATGCGCAAGACTGTCCGGGTGTTACCTGACATGGACCGATGGCGGCAACTCATCAGTGAGTACGGGCAGCTACAGCAGCTAACCGGGCACACACCTCAGACACGTGGTCAGCGCTTCAACAACATGATCGCTGAACTCCTACAATGTTGGGGCATCCAGGCCACGGCCAATGTCCGAGCCGCCGGCGAGATCGACGTCGCGTTCGCCATCGACGGCGTCCGCTTCGTCGTCGAGGCCAAGTGGGAGAAGACCAAGGCGGACACCGGACGTATCGCCAAGCTGCAGAAACGCGTCCGGCAGCGCTTGTCCGGCACCTACGGTGTATTCCTCTCCATGTCGGGCTACAGCCCAGAAGCTCTCGACGATATAGCCGACGGCGACCGGCTCGAAGTGCTCCTCCTGAGCATCGAA # Questionable array : NO Score: 4.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-0.92, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGTACGCGGGGCTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //