Array 1 150846-154532 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047602.1 Thermoanaerobacterium aotearoense strain SCUT27 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 150846 30 100.0 37 .............................. CTCCAACCCTTTGGCTTTGGCATTTATTTCACCTCAA 150913 30 100.0 37 .............................. AACAATTAAATGACTTTTACGAATTTAAAATATTCGA 150980 30 100.0 35 .............................. TTATTTTCAAGATACAAAGCCATGCATAATACAGA 151045 30 100.0 36 .............................. TTTTATATATTTTGAAACTTTTTTATTATTTGCATC 151111 30 100.0 36 .............................. ATCCTCTTTTACAATTTCTTTATCTGCATCTGCAAT 151177 30 100.0 37 .............................. GTGGACCTCTGTATAATGCCAAAGGAGCTAAAATACC 151244 30 100.0 36 .............................. GCTTTTTATCGATGTTTGTACATTATCTGCCAATAT 151310 30 100.0 36 .............................. TACATATCTTGTAAAATATAATAAATTGGATGGAAC 151376 30 100.0 36 .............................. TTAGAAAGGTATTCTTGAGCAAGCTTCCATGTTTTT 151442 30 100.0 36 .............................. ACCTAATAAAGCTCGGCTTTGCGCCGAGCCTACTAT 151508 30 100.0 37 .............................. AAGCTTACAATCTTTCGCTAATAAATCCTAATTTTGC 151575 30 100.0 38 .............................. ATAAATGTTTTTGAAAGTGATTCTTTTAATATTTCTTC 151643 30 100.0 37 .............................. ATATTGGTAGTGAATTTCCTGCTGTTGTTCAGTTAGC 151710 30 100.0 36 .............................. GAATACTTTATAGGAAAATTAGCAATAACATATCTA 151776 30 100.0 40 .............................. TGGAATCATAGACACTTACAATTTTTTGAGCATAATTTGG 151846 30 100.0 37 .............................. ACTACAAATGCTATATATTCTCCAAATTCCTCATTGT 151913 30 100.0 35 .............................. CGAAATATCAAGTACCCGGAGTAAGCGAAGTATTC 151978 30 100.0 37 .............................. ATATATTAAAGTGGAGGAGAATATGAATTGTTGGAAT 152045 30 100.0 35 .............................. TAGACTGGAATTCTCAGTTTGCAGGGATACAGACG 152110 30 100.0 37 .............................. ATGAAAATGTCCCAGATGTAGAAGGTATAATTTACCA 152177 30 100.0 37 .............................. ACATTATCAAGGTCAATGGCAATTTCTTTAAAAGCAT 152244 30 100.0 35 .............................. TTTCTCCTACTTCGTTTGTAGTTTCAACTAGTCTT 152309 30 100.0 36 .............................. AAAATATAAATTTAATGAATTGTATGACAATTTAGA 152375 30 100.0 36 .............................. ACAAGTTCTATTCTTGTATTAAATTCATCATTTGTA 152441 30 100.0 36 .............................. ACATTATTTGACCTGTGCTATTTTTTATAATAAAGG 152507 30 100.0 37 .............................. TTTATGAGGAACTGTAACAACTGCGTCTGCTGCCTGA 152574 30 100.0 38 .............................. AAGGACTTTGCGTATTGTCTACATTAAACTTCTTGTCT 152642 30 100.0 36 .............................. AGTGCAAAAAGCAGTTCAAGGCCTTGCAACAGATAT 152708 30 100.0 38 .............................. TTTAATTTCTTTGCTAATTTATCACGTTTTTGAAGTTT 152776 30 100.0 36 .............................. GCTTAAAACAAAACAAGGAGTGACACAACAACAACT 152842 30 100.0 35 .............................. ATTTGTAGACAGTGCGGAAATTTAGTTCCAGAGAA 152907 30 100.0 35 .............................. CGCTTAATTATCCTGATATAACACAAGTGACGACG 152972 30 100.0 37 .............................. TTGGGATGCTATCGCTAACCAATATCGGAAATTGAGA 153039 30 100.0 36 .............................. CTATTTTTGCTTTGCCTCGCTTAAGCAGTTTCCTTG 153105 30 100.0 36 .............................. TAATGCAATTAAAACAATTAAGTTAAATTAAAATTA 153171 30 100.0 37 .............................. AAAGAAATAAATAAGCAAAAGTATAAAAAAAGAAAAA 153238 30 100.0 36 .............................. TTAGATATTTGGGAAAGTCAAAAATTTATAAGGTTA 153304 30 100.0 34 .............................. AAAATAAACAAAAAAATAAAGCAGGCTTAACCTG 153368 30 100.0 38 .............................. ATAACTCCTTTCCTTAACTCTATATATATAATAACATA 153436 30 100.0 38 .............................. TTGACTGAGAAGTTTCCTTTTAGTTTGCCTTGGGATGT 153504 30 100.0 37 .............................. AATGTACTATCTGCTTTATCCCAACTATTCATTGGGT 153571 30 100.0 37 .............................. TGACTATGGATGAGAAAGCAAATATAATTCTTGAACA 153638 30 100.0 38 .............................. TGGTAAAGTTACAGCAATAAATGGTTCAAATATTACTC 153706 30 100.0 37 .............................. CTTGTATTTTGTAATTTCACAAAGTACATATCATATT 153773 30 100.0 36 .............................. ATTACAAAATTTATTGAATTTGCAATACTTGGACCA 153839 30 100.0 37 .............................. GTTAATCAAGCTATTCCATATATCCTCTGCACCTTGG 153906 30 100.0 38 .............................. TTGTTTTATCTATGCTGCCTTTTGCCTTTACTAATTTT 153974 30 100.0 35 .............................. ATGGTTTGCCTAATATGTTTATCCATTCTCTTAAA 154039 30 100.0 37 .............................. TTTGGATAAATTGCTATGAAAGGTTTATTGACATCAT 154106 30 100.0 36 .............................. CAAATATGACATTATTCGTAGCACAAAACAATACGG 154172 30 100.0 37 .............................. TTGAAACTTAGCCAATATTCCATCTTAAGCACCTCCA 154239 30 100.0 35 .............................. CTTATAAACAAATTCGGTTATAAAGTGTATGGCAA 154304 30 100.0 37 .............................. TTCATAATAATGTTAATATTGGTAGTGAATTTTCTGC 154371 30 100.0 36 .............................. TTTTTATTTCACCTCCATATTCTTGAGTTTTTCTAA 154437 30 100.0 36 .............................. TGGATTAGAAATCTTAATAAAGAAGGTAAATCTGCT 154503 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 56 30 100.0 37 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : GTACGACAGTGATGATGATACGCCGAGCGTAAGCAATTTTAAACTTATTGATGATGAATACTACAAAGTAGACGTGTTTATAGAGTATAATGAAGAAGCAATTAACCTATGGCAAAGGTATATCGATCTTAAAAAAATAAAAAATTTGTATAAAAGGCGGAGCACATTTGATGAATTTAAAGCTGATTTCTATAAATACGTAATATCAATACCAGAAAAGACAGAGAACATGCCTGCAGAAGTAGAAGGATTCAAATATGTCAATGCCGATTCTTTAAAAGATTATTATGATGCTGAAACAGGGTTTAAGCCAAGTGGCGTATTAAGCATCTGGTAGATGTCGTCGATATCCAATAGTGCAAAAAATGCTGGACATCGACGACACTTTGCCATAACGAAAAGTTGAATTTTCGGCAATTTGTGGTATAATAAAGGCATAAGCTTTACAAAAGACACCTTTTATGCAAGATAAAAGTGTTGAATTTTCTGTGCTCTAACGC # Right flank : CGGAGGGATTCTTATGTTTAGAAATAAATACAAATTAATGGTATCTATCAGTATAATTGTATTGTTTTTATTCGTAAATGTATATGCTGTACCGTATATAAAGTTAGTAATAAACGGACAGCAAGTCAATACAGATGTACCGCCACAAATAGTAAATGGTACAACATTAGTACCAATACGTGTAATATCCGAAAGTTTAGGTGCTAAAGTTGACTGGGATGGAAACACCCAAACTGTCAGTGTAACAATGCCGAGAGAAACTTTAGAAGCTCACACAGTAGATACCTTTTGGGAAGCGTGTGAATCAGATACCGTCACAGAACCTATAATAGACGATTCTGTAACACCAGAATTTAAAGCTGTTTTACAAAAAGCTTTGGCACTTCTTAAAGAAAAAGATAATACTACGTATAAGTTTGTTTGTGTATACATTCCAAGAATAGCTGTACAACAATACAAAGATAACATTGTTGGTTCTTGGGTAGATTATACAACACACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 2635195-2635555 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047602.1 Thermoanaerobacterium aotearoense strain SCUT27 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2635195 31 100.0 35 ............................... CACCAGTAGAGCCGAAACCGGAGAAACCGAAAAAG 2635261 31 100.0 36 ............................... TAGTAAGGCGTGAAAACAATATAGATTTAGGCTCAA 2635328 31 100.0 35 ............................... AATGTTTGAGCGTCACTCTCGCCTTCTACAAGTAT 2635394 31 93.5 33 .....................A........G AAGTATTCGCTGGAGGATTTGAACTCGTCCCCG 2635458 31 100.0 35 ............................... TGAAATAAACACTCATAGATTTTCACCGCCTTTAA 2635524 31 93.5 0 ...........................T.A. | T [2635550] ========== ====== ====== ====== =============================== ==================================== ================== 6 31 97.8 35 GTTTAGGTAGAACCATTGTGGGTTATAAACT # Left flank : AAGTATACAGTAGTTATGATTATGAAGTGTTTTTAGATCCGAGGCTACATAACTACTTAAATGAATTGCTTACCGAAAAATATGACAATAAAGACTTAAGAAAACAGTTTTATGAAGAGTTTGACGGCATAACGGTATATCCTTTTGCTTTCAAGGATAAAGTGATAGAATCAATAGATAGCAGGGATTTTTATGAGTTGGAACTTTATAAAATTTCGTTAAACCTGGGAACTGTACTGGGATTAATGAAAAAAAGATTAATAGAACAGGAAAAAATAAATGGTATTCCGATAAATTTTGTAAAGTGCTATTATGACAGTGAGATTGGTTTGGACAAAAACAGGCCACTGGAAATCAAAAAGTAATAGAAAAAGATTTTATATAGCACATATACATTGTGAATCGTCTAACAAGATGGATTTTTACATTGTCAGAGGTCGACGACGATTTTGAGGTTTTTGTATCCTGAAAGCCTTAAAAAATAAGGCTTTCAGGATGGG # Right flank : TAATACCAGAAAACTAGACAGACAAAAAGTCAAAAATAAGTTAGAATATAGTTATGAATAAGAAAGGTATGCATCTTACGACACATACCCTCGAATACGCTATTTTACTGGTGCGCCCGACAGGATTCGAACCCGTGGCCTTTTGATTCGTAGTCAAACGCTCTATCCAGCTGAGCTACGGGCGCACACTTACATACTTTATGATACCACAATTTATTTTAATTTGCAAATCTCTGCCGAATTTCGTTTGCTTAAAAAGGGCTATAGATTTTTATCTATAACCCCTTACTTTATTACTGCATTCCTGTTTGTGTTGTATTCTGCTGATTTGCTTGCTGATTTAAGAAATTGGCCTGTGCTTGCTGAGCTTGTTGAGCTTGTAATTGTGGTGTCAATTGTTGCAATTGCTGATTTGACGAATCTAATATTTTGCTCATCTGAGCAAATACTTGGTTTGCCTGTATGCTTTGCTGAGCCTGTTGAAGTGCAGCCATAGCCTG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGGTAGAACCATTGTGGGTTATAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //