Array 1 2821-153 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKGW01000120.1 Acinetobacter junii strain TUM15092 sequence120, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2820 28 100.0 32 ............................ ATAAAAGAGCAGCTTCAATAGATTCCACAGGC 2760 28 100.0 32 ............................ ACAAAAAACAGGAAATTCTAGTGATAGATCTG 2700 28 100.0 32 ............................ GTCATAGCCCATATCTGTGAAATAGCCATCCA 2640 28 100.0 32 ............................ GTACCATCACATTAAACGTGGAGATTCCTGCG 2580 28 100.0 32 ............................ TCTTGTGGATTGTTTGGATTGTGACTTGCTGC 2520 28 100.0 32 ............................ ATCAATTGAAGATCTGAATCTAAGCACTCACA 2460 28 100.0 32 ............................ AAGTAGCGTATTAATAACGTCAACACTACGCT 2400 28 100.0 32 ............................ AAACGCGCTTCTTCTGCTTTTCGCTCAGCTTC 2340 28 100.0 32 ............................ TAATTGAATACATTATCTCGGTGGATATGACT 2280 28 100.0 32 ............................ ACATACATATGATTCTCTATATGAACAAATCA 2220 28 100.0 32 ............................ AATTCGTTAATGTGGAACGCACACATTTAATT 2160 28 100.0 32 ............................ AGCTACAGAAATCGTATTGCGCCTTGTGTGGG 2100 28 100.0 32 ............................ TGCAATTTCAGGTGCAACCAATGGTGCAATAT 2040 28 100.0 32 ............................ ATTGTTGTTGGCAGGCTTAATTGTTGGTGCAA 1980 28 100.0 32 ............................ AAATATTCACGAAAGCCAAAACTCTATAAGAG 1920 28 100.0 32 ............................ ATCATCTGAATCGATCATTGATACTTTGCGCT 1860 28 100.0 32 ............................ AAATGTTCCATCAACTTCTTTTTTGAGCTGAT 1800 28 100.0 32 ............................ TGAGCAATGTGGTGCGAAATGCGCTTCCCTTT 1740 28 100.0 32 ............................ TAAGTCACATAACGTTTTACAGATGCCATTAG 1680 28 100.0 32 ............................ TGACTTTGTTAATCAACATAAAGATCATCCCG 1620 28 100.0 32 ............................ AATCAAGAGGATTGGTTACACCCACAAAAATA 1560 28 100.0 32 ............................ ATACGCATGAAAAGCTTTGATGTGGTGACTCT 1500 28 100.0 32 ............................ TCTTCTGCTTTGCGTTTAGCCTCTTTCTCTGC 1440 28 100.0 32 ............................ CGAAACTTTAACATTGGAATTATTAGATATAA 1380 28 100.0 32 ............................ TATTGAGCTTAACAATATTTGCATGTATCACT 1320 28 100.0 32 ............................ TTTGGTTCGAATAAAATTAGAGAGCTGATGAT 1260 28 100.0 32 ............................ AGATGAATAACGCCCCGCAGAACAAGCTAAAA 1200 28 100.0 32 ............................ ACCCTGAATCCCGCAGTATTCTTTAAGTTAAA 1140 28 100.0 32 ............................ ATTTCGAAAAAGCGTCAAAAAAAATAGGTGTT 1080 28 100.0 32 ............................ ATCACCCCCTCGGATAAAGTCGCAATTATTCA 1020 28 100.0 32 ............................ AAACTTTATCTCCACGTTCTTCGGGTGTTTCA 960 28 100.0 32 ............................ CCAATACCATAACCTGGATCAAATGATATTAC 900 28 100.0 32 ............................ ATTACGACATGCATATATCAAGCAAAGCTCAA 840 28 100.0 32 ............................ TTTAGAAAAGGTTAATCTTAACGATTACTACA 780 28 100.0 32 ............................ TTTAACGCTGACGTATATACAAAGCAAGAAGA 720 28 100.0 32 ............................ ACAGCCTGACTACACGGCGCTGCTAAACAGAT 660 28 100.0 32 ............................ AAGTTCATGACGCATTACTCCTCTTGAATTTC 600 28 100.0 32 ............................ GTGGTGCCATTGTGAAACGTCAGGCTCTTGAC 540 28 100.0 32 ............................ AAATGAAGCAAATCCCGAAGCTACTGACCTAT 480 28 100.0 32 ............................ AAAATGGGCTTACTACAAAACTGGCAAACAAC 420 28 100.0 32 ............................ GCTTGATCTAGTACCCGCTTCAACTAAGGCTG 360 28 100.0 32 ............................ TTCAAGAACATTTTTTAGAAAGCCTTTTTGTG 300 28 100.0 32 ............................ ATCAATCCGCAAAACAGGTAAATACGAAGCAC 240 28 100.0 32 ............................ TGTTGCGTGATTCTCACCCACGTTCTTAGCAA 180 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 45 28 100.0 32 GTTCACTGCCATATAGGCAGCTTAGAAA # Left flank : CTGGACATTCGACGTTGGCTTGAGCGTTTAGAAGATTATGTACATGTCACTTCTATTCGTGAAGTACCTAATGATATTAAGAACTATGCCATTTATAAGCGTAAGCAAGTGAAAACCAATGCACAACGTTTGGCGCGTCACCGTGTAAAACGTGGGGATATTGGCTTTGATGAGGCATTAGCCAGATACAGCAATGTAGTTACGACAACCAACATGCCTTATATTGAAATGAAAAGCCTGAGCACTTCAGATCAGCAAAGTGAAAAACGTTTTAAATTGTTTATCGAAAAGCAATCTGCTGAAAAATCTGAAACTCAGGTTTTTAGCACTTATGGATTAAGTTCGGTGTCATCTGTACCAGAATTTTAACCCAATATTTTTATACTCTTTAACAGCTTAATAAAATCAATAGCTTATGATAGTGGTTTAAAACTTGGGTCTTTTGAGAGATTTAAGAGTTAAATCACTGTTATAACTTTATTTTTTGCTTTAAAATTGCT # Right flank : AATTTACTTTGAACCCGATGCACAAGGCTTTGTTGCATAAATAAATTTCATCCCCATACATGTTAGATGAATACAGAATCAAAAAGCCGATACAAAACAACGAACTGGTCTGAGTACAATCAGGCTTTACGTCAACGGGGTGCTTTCACCATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 145-472 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKGW01000010.1 Acinetobacter junii strain TUM15092 sequence010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 145 28 100.0 32 ............................ ATGTTGCCACCGTTAAAATAATTACTGGAGTC 205 28 100.0 32 ............................ TAAGACATGGACAAAAGAAACTGAATTAGCAA 265 28 100.0 32 ............................ AACCATTTGATCAAGGGGTATTTTATCCATGA 325 28 100.0 32 ............................ TCAAGTTTTAATGATCTTGAGGGCTTTTAAGG 385 28 100.0 32 ............................ CAGCATAACTACCAGTCGCCTTTGGAAGCAGC 445 28 92.9 0 .......................T...G | ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.8 32 GTTCACTGCCATATAGGCAGCTTAGAAA # Left flank : GACTTGCAAATAAGAGTCGATATTTTGAATAAATTTACTCAACTTGGTACAGCTAAAACGGTGGCTGTTGCATAAATATCTGAAGATTAGAACAACTCTACCTTTCGTCTATTTGTGCAACAAAGCCGATGCACAAGACAAATTG # Right flank : GTATTATCTTCAGTAATACTTATGCAAACGAGAGTTTCTGTAAATAATTTTTGTAATAAAAAAGCCAATTATCTCAGTAAGATAATTGGCTTAAGCAAAGAGTTTGGCTATCCGCTTATTCTTCGATCATCCCAATAACACGGCACTACAATCAAATTATTTTCATGTAACCGAGACCATAATCTTACACCTAAATCCCGCTGCATATTTTGGACTGTGAAATTGGAAATCAGCAGGGTAGATTTCATATTGTCATAACGACTATACAAAACCTTATGCACCATCTCCAGGCGTTTTTCATGCCGGTCATGCAGGCCATATTCATCTATGACCAATAAATCAAAACTAGAGAAATGGTCGATAACTTCCTTCTCAGAACGTGAAGCATCTGACCAGGTGTCCATCATTTTTTGAGCAATTTCTGCACTGGTATAGTAGCGCGCAGATTTTGTACTGTTATGCAGAATGTTGCGAATAATTGATGCACTCAGATGGGTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7760-14450 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKGW01000020.1 Acinetobacter junii strain TUM15092 sequence020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 7760 30 96.7 30 .............................A CTAATCCTGATGTTACAGATCTATCACTAG 7820 30 100.0 30 .............................. CAGATCGCCTCCACCAATTTATTCTTTTCA 7880 30 96.7 30 ............................T. TTCTTGTTTTCTGAACAAGCCCGTATCCCT 7940 30 93.3 30 ............................GC ACTTCTTGCACTGATATAGAAATTGTGTCA 8000 30 96.7 30 .............................A GTCCAAGCGTCAGAGATTGAATTTGTTGCA 8060 30 93.3 30 ............................TG AGAACTTTAGCGACTTGGGAAACGTTCGGA 8120 30 96.7 30 .............................A TTGATATTTTGTTGATCATCAAAGTAATTT 8180 30 96.7 30 .............................A CAACCGTCAGTTCTAAAAGCAGGCGGACGA 8240 30 93.3 30 ............................TA TAAACCAAAGCTCGGGAGACTTACAGCCGT 8300 30 100.0 30 .............................. TCGCAACTATCTACGAATTTGAACGATGGC 8360 30 100.0 30 .............................. AAGCTGCTTTTGATGTGCCCTTTTCCATTG 8420 30 96.7 30 .............................A GAGCATAACACTTACGAGTATTGTGCAATT 8480 30 93.3 30 ............................TG CTGCTTCTACCGCTTGTTTTGCAAGTCGTA 8540 30 96.7 30 .............................A TAAGCTTGTGTATGGATGAGCAACGGAATA 8600 30 96.7 30 ............................T. GAGAAAACATACAAGCTTCACGTTTCCATC 8660 30 96.7 30 ............................T. GTTGCCCTTGATGAGTTGTCATATATCCCA 8720 30 100.0 30 .............................. TCACCCCTCCGTATCCGCTTTTGGTTCTAA 8780 30 96.7 30 .............................A CAGCCAATTCCTTGAAAGTCACGCCCTCAG 8840 30 93.3 30 ............................TA GACCCAAGAGAATACTGCTCAATAATTCTT 8900 30 93.3 30 ............................TA CACCACCACCTAGAAAATAGTAAGGTTGAA 8960 30 96.7 30 .............................A CTGCTGCGGTCGGTGCTGTAATCACCACTA 9020 30 96.7 30 .............................C GTGTGGTTTTTGAATCCTTAAGCATCTGCA 9080 30 93.3 30 ............................TG CACGATTGACCTTGTACGAATACAGACGAA 9140 30 93.3 30 ............................GA ATGAACATTGAACGTCAAAAAAAAGATGCG 9200 30 96.7 30 .............................C ATACTCACCTTGTTGCATTTTCTTTCACCA 9260 30 100.0 30 .............................. CATCGGCGATATGACCGAACATGTTTTACT 9320 30 93.3 30 ............................GA AATCAACGAACGGTGACTAAACGATTATTT 9380 30 93.3 30 ............................TA TAACCATCAATGTATACAGGCACATCCTCA 9440 30 93.3 30 ............................TC TGGAGTTGTTCCAACTGCCGCCGTGTTAGG 9500 30 93.3 31 ............................TG AGTGCGAAGACGATTCTAGCCGCTTCATGCA 9561 30 93.3 30 ............................GA ATGAGGTGAGCATGTTTAAGGAATTCTTTG 9621 30 93.3 30 ............................TG AACAAATTAAAACGGCGCTGCAGGAGCTTC 9681 30 93.3 30 ............................TA CGAGGAAATTTTATGAAACAAGCGCCTAAA 9741 30 96.7 30 ............................T. ACGACAGCATGATTTTTAATAGAGCTGCTT 9801 30 96.7 30 ............................G. ATGCAATGACCGCAGCCTGACGGCCAATGA 9861 30 96.7 30 .............................A TCGGAAGTCTCGGCGCTGCAACGGTTGATA 9921 30 96.7 30 ............................T. GTTGGTGAGCCTACGGCCATACGATGCGAT 9981 30 96.7 30 ............................G. CGAGATCATTGGTCGGGCTGGAAAGCAGCC 10041 30 96.7 30 ............................T. GTTGGTGAGCCTACGGCCATACGATGCGAT 10101 30 96.7 30 ............................G. CGAGATCATTGGTCGGGCTGGAAAGCAGCC 10161 30 100.0 30 .............................. GCGGTAGTTCTTGTCATCCCACCACGGATA 10221 30 96.7 30 ............................G. GTAGCTTTGAGCAATGCGAATGCACCGCTC 10281 30 93.3 30 ............................TG TATAGATTGCGCTGTTTGCGCCATGTTCAA 10341 30 96.7 30 .............................C ATAAAGGCGCAATACAAATTCTTGCTGACG 10401 30 100.0 30 .............................. ACTGTGACAACTGCTCTTCGCGGTGTAATT 10461 30 96.7 30 .............................C ATTAGCGGAGTAACAATATTAATCCAATTA 10521 30 93.3 30 ............................GA TACAAAGCCTGACTCATGCAGCATTGTATC 10581 30 96.7 30 .............................A ACAGCGGCAATAACGGCGCTTTCACGTTCC 10641 30 96.7 30 ............................T. ACTGCCATCTATTCAGGTCAAAAAACTCAA 10701 30 96.7 30 ............................T. GAGCACGTAATACGTTAGCGTGATTCATAT 10761 30 93.3 30 ............................TG TAAAGTTGAAACGTCTGCTTGCGCAGAAAC 10821 30 93.3 30 ............................TC AAAAAACACCCGACTATATCAATGATAAAA 10881 30 100.0 30 .............................. GGTCAGTATCAGTTTTCTATAATTGGGTTT 10941 30 93.3 30 ............................TC GCTTCTTCTCAAAGTGCGGCTTAGTGAGAT 11001 30 93.3 30 ............................GA GCACCCAATTCACGCTCGATGAAATGACGT 11061 30 96.7 30 .............................A CAACAGCAGTTTGTACGCCTGCTAGTTCTT 11121 30 96.7 30 .............................A TAATGGGACTCCCCAACATAACCATTTGCG 11181 30 93.3 30 ............................CG ATGGTAATATACTCGTAATTCTGTATATAC 11241 30 96.7 30 .............................G TTAGTTAATGTCGTGGGGAAATTGACAACA 11301 30 96.7 30 .............................A ATAGCGATCCCAGCAGTAAAGCCAAGCCAA 11361 30 93.3 30 ............................TG ATACTGAAACCAATCAAGTAACCGATTTAC 11421 30 96.7 30 .............................C CGAGAGTCCAACCGCCTAGTGTTGTTGTAG 11481 30 96.7 30 .............................C CTCTTAGAACTTTTGCTACTTGGCTGACGT 11541 30 93.3 30 ............................CA ATCAACAGTGCCTAGCAATTGCTCTACTGC 11601 30 93.3 30 ............................GA CGACATCACAGATACTTCTGTATCTTTCTC 11661 30 93.3 30 ............................TA ACAGCCAACCACAGCCCGAAAAAATTACTA 11721 30 96.7 30 .............................G GGTTTTTATCCCTGGTTCCAGGTCTCTTAC 11781 30 96.7 30 .............................A TTGATCTACAGCATCGAGTTTATTTTTAAC 11841 30 93.3 30 ............................TA CCGAAGATAAATACCAAGTTGTTGTTTATC 11901 30 96.7 30 ............................C. GTGTTGTACATCGTTGCGAGAAATATTAAA 11961 30 93.3 30 ............................TC ATTAACGGCCAAGCGTGGACACGAGAGCAG 12021 30 93.3 30 ............................TC CTCCGCCACTTGGATGCGCGACATTTTATT 12081 30 96.7 30 .............................G TGAGAGTTTCTTTTCTTGATCTTGTTCAGT 12141 30 100.0 30 .............................. AAAAGCCCCGATTAATTGGAAAGGGGGCGA 12201 30 96.7 30 ............................T. ATCAAGGACGCCTTAAGAAGTATTGCTCAT 12261 30 96.7 30 ............................T. TGCTAGCTACACCCTTATTGATTAGATCAA 12321 30 100.0 30 .............................. GATGTATACAATGTTACGCGCATCTGAGAT 12381 30 96.7 30 ............................T. AACGATGTACAATCGCCTGATTTTGAGAAA 12441 30 100.0 30 .............................. CGAGCAATTGAACCTAGCATTTCCTCTGTA 12501 30 96.7 30 .............................A TAGAAATTGGATTCACTGCATCAACATTGG 12561 30 100.0 30 .............................. GGTGTGGAAGCGTTCTGAATCCATGCGAAT 12621 30 93.3 30 ............................CA ATCAGAGCGAGCAACAGTAATTACTAGTGA 12681 30 96.7 30 ............................T. GCACTGCAGAACGAGTTAAAAAGTTCATCG 12741 30 100.0 30 .............................. AGAGAGCATCATTTGAAGTGATTAGATCAT 12801 30 96.7 30 ............................T. TAAGGATTAAAACTGATTCAGGCTATCTAT 12861 30 93.3 30 ............................TC TATGCGGAACAATATGATCGACTACGTTAG 12921 30 96.7 30 .............................A TAGAAATTGGATTCACTGCATCAACATTGG 12981 30 100.0 30 .............................. GGTGTGGAAGCGTTCTGAATCCATGCGAAT 13041 30 93.3 30 ............................CA ATCAGAGCGAGCAACAGTAATTACTAGTGA 13101 30 96.7 30 ............................T. GCACTGCAGAACGAGTTAAAAAGTTCATCG 13161 30 96.7 30 ............................T. AACGATGTACAATCGCCTGATTTTGAGAAA 13221 30 93.3 30 ............................TA TATTTGAGAAAGGGCCATTTAGCACTTAAT 13281 30 96.7 30 ............................T. TAGGAATCCACCACATGACATGGTAATGAG 13341 30 96.7 30 .............................A GAAGGAGCGAGAAGCCAAATTTTAGCTACA 13401 30 96.7 30 .............................G TAGGGCGAGAGTAAGACAAATAATTCTGCA 13461 30 93.3 30 ............................TA CTTGAAATAATTTGTTTTTTGCTTGGTGGT 13521 30 93.3 30 ............................TG CTCAGCAGATAAGTAGCCTGTTTGTTGTGT 13581 30 93.3 30 ............................TG CAATTCATTTACAGTTCTCGCCATAACAAT 13641 30 93.3 30 ............................GA TAAGTTTTAATTTGTGCGCCGATGCCACAC 13701 30 100.0 30 .............................. CAATCACACAATCTTCATCCGAACCAAGAA 13761 30 96.7 30 .............................C GCAAGCGAGTTGCTTCTAAACGAGCATCTT 13821 30 100.0 30 .............................. CGTCATAAGCATTTAATCGAATACCCTCAA 13881 30 100.0 30 .............................. CTAGTGTTATTGGGTGGGTAAAACGATTTA 13941 30 93.3 30 ............................TG TTTGACCTGAATCCAAAACCAAATTAAAAG 14001 30 96.7 30 ............................G. ACAGGCTAATGTTAAGCCATGTCGGGTGGG 14061 30 100.0 30 .............................. TCGGGGGTGATGTGAGTAAGCAAAACGATA 14121 30 96.7 30 ............................T. CACCCCGACTTTGTAATTTCCTCCGACATT 14181 30 93.3 30 ............................TG ATTCAACGGGTGGCAAAAATAAAGCTGAAT 14241 30 96.7 30 ............................T. ACAGCGCAGGGATGTGCTGCGGGTATAGTA 14301 30 96.7 30 .............................G CAATTCATGGTATGGGTTTTATTAGCGAAT 14361 30 96.7 30 .............C................ AAAGCAATATTGACCAATAAAAGTAAGCGT 14421 30 93.3 0 ............................TA | ========== ====== ====== ====== ============================== =============================== ================== 112 30 96.0 30 GTTCATGGCGGCATACGCCATTTAGAAAAT # Left flank : GTAAATGGCTAGAACGATTCATTGATTATGTTCATATCATTCAACCGAGAGAAGTACCTCAAGCTAAAGTTACTGGTCATGCACACTATTATCGAGTCAATCCAAAGATGAGTGTTGAAGAGCGTATAGTTCATCAAGCGCAACGTCGAAATATTTCTTTGGATGAGGCTACGCAGCATTTTAAACAATATATTGAAAAACCTATTATTGAGCCTTATGTGAGTTTAAAAAGTCTGAGTGCAAAACGAGATCAAAATATAGATCGACCATATCGTTTATATATTGGTAAATCTCTAGTTGATGAGGCAAAAGATGGAGAGTTTGGAACGTATGGACTAAGTCGAATGGCAACAGTTCCAGAATTTTGACCCAATATTTTTTTACTATTTAACAGCTTAATAAAATCAATAAGTTACATCAAGTCGTTTTTTGATTGGGTAAATTGCTAAAAAACCATCATAAATACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : ACATGTGATTTATTCATATGAGCCATTTAGAAATGTAACGGTCTTGATTGGCATTTGTTCTGTGTGTTCATTACGGAATTTATTTTAAGAATTAATAAGTGACTTATAATTCTTGTTCCAAAATTATCGTGTTATATGTCATTTAAAATACATAACATCAAGAAATATGATTCTTACTACATTCTAGATCTTTAATTTTTAAATAAGAAAATATACCCTGAAACTAACGTTTTTTTAGTGAAATTTTCATGCGTGGTTTATACCTCATCACCAATGATGATCCCATTCAACTTCTTTTAGAAAAGTTAGAGGCTGCACTAGCTACTGGTCATATAGCTATTTTGCAATATCGTCGAAAAAAAATAGAAAAAATAAATCAACCATCTGAAGTGGAGTTGATCAAAGTCCTTTGTGAAAAATATCAAGTCCCTTTTGTCATTAATGATGATTTGGCGTTAGCAGAACAATTTGGTTTAGGTGTGCATCTAGGGCAGTCCGAT # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //