Array 1 23676-26142 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCLI010000018.1 Blautia producta strain DFI.1.120 AJFFBIAM_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================================================================== ================== 23676 32 100.0 34 ................................ GTTCTGGTTGCGGTTCGGCTCATAGTTCCAGAGA 23742 32 100.0 33 ................................ GCAGATATCGGGTCACAATTGATGGCAGGTATG 23807 32 100.0 35 ................................ ACACTAAGCAGACCCTGCTCATCCTCGCGGACCAG 23874 32 100.0 36 ................................ ATCCGAGGCATATCAACCAGGACTTATACGGACGAG 23942 32 100.0 33 ................................ ACCGGGTTAGATCCGTTCATGACCGGTGACTGC 24007 32 100.0 34 ................................ TTCCTGTCTGAGTGATCCGACCATTGAAGCTGGT 24073 32 100.0 33 ................................ GATGTATCGTACGGCAAGAGCAAGTTAGTATAT 24138 32 100.0 35 ................................ TTGGGTATTGAAGGTATTTTATATAAAAAAGTACC 24205 32 100.0 34 ................................ GTTGCGGGTCGGAGAAACATCATATATGTACAAG 24271 32 100.0 34 ................................ ATTCTATAGGCAGCTGATGATGATTATTAAGTAC 24337 32 100.0 34 ................................ GGCCAATCCCTGCATAAAGTCCGGCATCCAGGAC 24403 32 100.0 36 ................................ AAGGCAGATAACAGAAGGGGCAGAAGAGAATGCCAG 24471 32 100.0 34 ................................ ACCGTAATTTCCTATCACCACAGTGGTGAAAATA 24537 32 100.0 34 ................................ GATGAGTATGGTGCGCCCTCAATGTCTCCTGCTA 24603 32 100.0 35 ................................ GTGAGCATATTAAAGGTCTCTTCCCAATTGAGCGT 24670 32 100.0 35 ................................ ATCTACCTCGTTGTAGGTGTAGGATATCCTGTCGC 24737 32 100.0 34 ................................ ATAAGATCTTCGAGATAGAAGGCAATGTGGAACG 24803 32 100.0 34 ................................ ATGTCTGATGAGTGTTACAAGATGGCTACGACAG 24869 32 100.0 34 ................................ GATAATAAGGTGATGTCATGGAAAAAATGGAATT 24935 32 100.0 33 ................................ ATACCGCGGAATCCTTATTTTCATGGTCACTTC 25000 32 100.0 34 ................................ AAAATTGATAATTAAGTATTGACAATGCCACAGT 25066 32 100.0 33 ................................ ATAACGAAAACCGTAAATTATGTGATCTGGACA 25131 32 100.0 33 ................................ GTTAAAGGAAAGCTCTAAAGATTGGACTAGGCG 25196 32 100.0 35 ................................ ATGAAAAGATGTACGGTGCCGGAACAGCAGCTTAG 25263 32 100.0 34 ................................ ATGATGACATTTCAAAGTATGGAGATTTTAACTG 25329 32 100.0 35 ................................ TCTGTGTTCAATTCTGCATCTCCAAGTTTCTTCCG 25396 32 100.0 34 ................................ AAAGGCGTATTTCCCATTGGTATTGTTGCCCAGG 25462 32 100.0 34 ................................ GGAGAAACGCCGGAGGCGGAAGCCCAGCTCGCGC 25528 32 100.0 34 ................................ GAGCGATGATGCGACTGCATACATATTCAAATTT 25594 32 100.0 35 ................................ GTATTGTCATACACCAACCGCACAAAACTGGTGTC 25661 32 100.0 35 ................................ GTGATAATGCTGTCATCATGACCAAGGCGCCGAGA 25728 32 100.0 36 ................................ ATTTCCAGCTTGCTGCCGTATATGCCACCTGTGCCT 25796 32 100.0 34 ................................ AACGAAGAGCCCATCTGCATTGGCCTCTTCTTGT 25862 32 100.0 34 ................................ ATACGCCGCAGGCGGCACAACACAGATGCTGGAT 25928 32 100.0 33 ................................ ATCAATAGAAGATCTCACAGCATATGAAAACGC 25993 32 100.0 86 ................................ GCAATACTATAACCCTTTTCTGTATTTGCCAAGTTTTTACCTTCGCAATAGTGCATAATGAAGCCGTCGAAATTTAAGACTGAAGT 26111 32 71.9 0 ..T......C.TA.AAA......A..A..... | ========== ====== ====== ====== ================================ ====================================================================================== ================== 37 32 99.2 36 GTCACCACCTTCGCGGTGGTGTGGATTGAAAT # Left flank : GATGAATACCCTCCGTTTTTTTGGAAGTAGGTGATATGATTGCTGGTTCTTATTACATATGATGTAAATACAGAAACAGATGCAGGAAAAAGAAGACTTAGAAAGGTTGCAAAACAGTGTGTTAATTATGGGCGAAGAGTGCAGAACTCAGTATTTGAGTGCATTCTTGATAATGCTCAATGCGTTTCTTTAAAAGCTATTTTAGAAGGAATTATTGATAAGGAGGTTGATAGTCTCAGATTTTATTACCTAGGAAATAACTATAAGACTAAAGTGGAACATTTTGGTGTGGATAGGGGAACTGCGGCTGATTCGACTTTGATTTTTTAGTGCGAATCCCAAGCTGACACAAAAATCTTGGGTCATTCGCACCTAAGAATGTGTCGAAAAGTAAATGGATTATATAACAACTGGTAGATGGTAATGATTTTATTATCATAATAATAAGAAAATTAGTATTTTTATACAAAAACATCAGAGGAAAATTAGATGTTTTTGCT # Right flank : TTATATTCAGTCAAGTGTTCCAGGCCGCATCAGTGAGTAGTAAAGTGAACCATAAGAAATATGACTAAGTGAATATGGTTTTTCAGAAAGGGGTGTGCATAAGAAATGAATGAAAATATTAAAAAGAAACTTCCCATTGGAATAGAGAGTTTTGATAAAATCCGAACAGAAGATTTTTATTATATTGATAAAACTGGGCTCATTAAAGAACTTCTATACAATTGGGGTGAAGTTAATCTTTTTACGCGCCCAAGACGTTTTGGAAAATCTCTTAACATGAGCATGCTGAAAAGTTTTTTTGAAATAAGCACCGATAAAGAGTATAAAAAAAATCTGTTTGGAGGGTTGGATATTTCAGATGAAAGAGATTTATGTAAGGCATATATGGGAGAATTCCCGGTTATTTCAATCAGTTTAAAAGGTGTAAACGGTACTGATTTTTCGGCTGCACGCTCTATGATGAGTTCAATCATTGGAAATGAAGCTTTGAGATTCTACTT # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCACCTTCGCGGTGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTCCACCCTCGCGGTGGAGTGGATTGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.90,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 18410-17390 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCLI010000019.1 Blautia producta strain DFI.1.120 AJFFBIAM_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 18409 32 100.0 33 ................................ GATTGCGTCCTGGGCCAGCTCCTCAAACATTCC 18344 32 100.0 33 ................................ GTTTCACATCCCTCTTCTTCCAGCGCACCTTGG 18279 32 100.0 35 ................................ CACCGGGCCAATGATCCCGGCAGCCAGGTCGGCTC 18212 32 100.0 35 ................................ ATCAGTGGCCTGATTGCGGCGGCTGGATTTAGGAC 18145 32 100.0 35 ................................ TCGGGTTTCTGTGCCTTTAATACGCCCTTTATCAT 18078 32 100.0 33 ................................ ACCCACCCGGCGGGGTAACGCCGGGAGAAAGGA 18013 32 100.0 35 ................................ CGCAGCATCTCGTATAAGCCTGTACTGGCCAGGCC 17946 32 100.0 35 ................................ ATTCTCTGCATTTGCAAGGATATCTGACGCTATCC 17879 32 100.0 34 ................................ ATCTGACTTTACGGAAAATCAAATGGGTGCAGAA 17813 32 100.0 34 ................................ CCTGGGGGCCTCCGGGAAATGGACTGGCGGAAAA 17747 32 96.9 34 ..............T................. TTTTAAATAAAGTTCGGACGTATGAACTTTATTA 17681 32 100.0 34 ................................ ATATCTGTATTTTTTTGTCTTTTATATCTGATAC 17615 32 100.0 33 ................................ CAAGTTGATTTTTTACCATTCCAGTAAACATCC 17550 32 100.0 32 ................................ GCAAATGCAGCAATCTGTGTATAACTGCCTTT 17486 31 93.8 34 ...............T..........-..... TATACTCATCGACAGGCAAGAATAGCAATCGTTA 17421 32 84.4 0 ...T..G.......A..A.T............ | ========== ====== ====== ====== ================================ =================================== ================== 16 32 98.4 34 GTCGTCACCTTCGCGGTGACGTGGATTGAAAT # Left flank : GAAAGGATAACGCCGCCTAGAAAAAGAAAAAACAGGTGGTTCTTAAGTTCAGGCAAAAATACCGCAAAAGCTACTGCGCCGAAGCCATAAGCCGGACAATAAGGTCCGAACAGAAAACCAACGTCAATAAACCGATGTTCCCTGACTGCTGCAACTGACGTTCCAATAGCCCAGCCGATGAAGGAATAGAGTAAGAAAAACCATAGAAGTTGATATAGTGTGTAGTTCAAGTGAGGCCTCCTTTGGGGATGATGTTGGATAATGGTGGTTTTAGTATACCTTATACGCGGATGGAGGAGATGTCAAGTGTAAGAAGGCGGAGGTTTTTGTGCGAATCGGGAGTGAACAGGAATTTGCAGGGGAATTCGCACCTGATATTGAGGTGAAAAGAGGTGGGGGGAATGATGAAAAGAGGTGGAGAGTCGTGTTTTTAATTGTAAATAGTGGGAAGATGTGATATTATATACAAAAAGTGGTGGGGGTATTTAGGTATTTTTGCT # Right flank : TTAAGCTTCTCTTACTAAAGTAGGCTTTATTTCATTTTCGATTTTTATAAATGAAATTATATTTCATATCAATTCATTAACCGAATACTGTTTACGTTGTAAAAGTTTTTCATCCACCCATACATTAAGTAATAATTTGCATTGACATACAACCAAATTTCCCGGCATACATTGTAAAAACAACGTTTCCGGGAGATTTTTCCTTGAAAAGTTATATAGAAGAACGTGCTATATCCATAGCCAACTACATCATTGAAAACAACGCAACTGTCCGTCAGACAGCCAGAGAGTTCAAGGTCAGTAAAAGCACGGTACACAAAGACGTTACAGAGCGTCTGCTGCAGCTTAATCCTTCACTGGCCAAGTGTGCCCGCAGGGTCCTTGACGTGAACAAGCAGGAACGTCATATCCGGGGTGGTATGGCTACCCGGGAAAAATATCTGCACAAGGTGCAAAAATAACGAAAGAGACTCTTGTTTTGAGAAAAATATGGGCGTATA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCACCTTCGCGGTGACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA // Array 1 207540-206571 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCLI010000005.1 Blautia producta strain DFI.1.120 AJFFBIAM_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 207539 33 100.0 33 ................................. GTGGCAAGGAGCATAAGATACGCACGGATTTTC 207473 33 100.0 34 ................................. TTGTCCGGGAAGGGAAAGCCGGTAGCAAACCGGA 207406 33 100.0 34 ................................. GTCATCATCTTTACAATTACACTACTGTTCATTC 207339 33 100.0 34 ................................. AGGCAGAGCTGGTTTGCTGCTTTCTCCTGCAACA 207272 33 100.0 34 ................................. GCCACCATTGTTTTTCCGTTGACAGTAAGTGTAC 207205 33 100.0 34 ................................. TATAGACAGGGCAGTAGGGTTCTTTAATGACACT 207138 33 100.0 34 ................................. GTTCAAAGAAGCGTATATAAGTCTTGGTGGAACC 207071 33 100.0 35 ................................. AGGTATCATAGTGATCCAAACGGAAGCAAGGATTT 207003 33 100.0 33 ................................. GCCAGTGTGCTTGTTGGAATGCTCGGAGGGCTG 206937 33 100.0 33 ................................. TGCGGCAAGTACGCCGTAATTAATATATCCTGT 206871 33 100.0 35 ................................. TCATACCCGTAGGCTGTGGAGGCTGCTATGCGCAG 206803 33 100.0 34 ................................. GATTGTCGCACCCGTCTTCTGGACACAGGACCAT 206736 33 100.0 34 ................................. TCATTTCGAGGTGGCTAAAGGCACATCTCAACAA 206669 33 100.0 33 ................................. TCTGGATCACAAAATCAGGCATTACAACGGTAC 206603 33 97.0 0 ...........................C..... | ========== ====== ====== ====== ================================= =================================== ================== 15 33 99.8 34 GTCACTCTCTGCGAGGAGAGTGTGGATTGAAAT # Left flank : CAGCGGAGGAAGCCAGAAAGGAACCTCTTCCGCAAAAACCGGAGATGAAACGCCTATCGGTATGTTTGCAGGCTTTGGAGCTGTGGCACTGATCGCTATCTTCGCTTGTACACTCAGCATTTTGAGGAAAAGAAAAAAATATAATTAATTTTAACAATTAACAGCAAATAGCTCACTTATTATTTTAAATACTCCCAGCAGAAGATTTTTTTCTGCCGGGAGTATGAGACAGAGATAAAAGACTCTGTTGAATTGGAAAATATTTTTGATATTTGGAATAAAAATATCAGCAAGCAAAAGAATACTCCGCACATTTGTGCAGGGTATTCTTTTTTTGCAGGTGCGAATGTCAAGTGAACATGAAATACCAGGGGGATTCGCACCTATATTTTATTGGAAAAAATGTGATATATGTGTTAAAATAAAAAATAGATATATAGAATATGTGATAAGTGTGCAAAATTCCTATGAGTAATATGGAACATTTGGGAGATTTTGCT # Right flank : TCCCGAAGTGAGAGGATTTAAGCATAAGTTCCCAGACAATTCCCATGTAGACATATGCGCCAATCTTCACAATCAGGGGCAAAATGTATATATACTACTTCAGTCCATTCCTTTTAACATCAAGCAATATTTTCAACAATATTTTACACTCAAAATTTCTTATACTGAAAAATGCAAATTTACATATTGCTTTATAACAAATTCATTGACACAAATAGAAAATCTAACTATAATAATGGCACAGTAACCCAATAATTTATATACAGCGTTAGTCCATGGCTGACGCTGTTTTCTATACAGGTACCTTGTTAAGGATATGACCAACTCTGCATCTGCTACTGTTTTTTAGTCATAAACAGTCTCAGTTGAACTGCTGACATGCTGCGTGCTGCTGCATCAAACTGTGAAAAATAGTAAAATCAGCGCAGTATAGTTGAGCATTCCACATCGTACCTGACACAGGTTTTGCGTCTGGGCGCGGACAAATAAAACTGTTGGAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCTCTGCGAGGAGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: R [matched GTCACTCTCTGTATGGAGAGTGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 46815-47440 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCLI010000004.1 Blautia producta strain DFI.1.120 AJFFBIAM_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 46815 32 100.0 34 ................................ CGAATAAGGTAGTGGCCAGGATCTGGGATATGGA 46881 32 100.0 33 ................................ TGGGTTCCGTAGTCAACGCTGACATATCGGTTC 46946 32 100.0 35 ................................ ATCTTCCGGCACCTTAAATAACACTTTTGCCGCTG 47013 32 100.0 33 ................................ AAAAACATAGTGAGCTGCTGCCGATAATATTCC 47078 32 100.0 34 ................................ ATTGCGGGGATGTCTTGTTTTTTGTCTTCCCCGC 47144 32 100.0 35 ................................ TTGCACTCTTCTGCGTATCTTTTAACTGCTGTCAT 47211 32 100.0 34 ................................ AACAAGATAAAATTGACCTGATACTTGTGACAAA 47277 32 96.9 34 ......A......................... AATGCAGAGGTCAGGGAAGCAGAAGCAGACAGCG 47343 32 87.5 34 ......A..............CAT........ ATGTGGAATAGAAGCTTGAATTTCCATTTCCATT 47409 32 84.4 0 .............T...A..AC..G....... | ========== ====== ====== ====== ================================ =================================== ================== 10 32 96.9 34 GTCTCCGGCTTTGCGCTGGAGTGGATTGAAAT # Left flank : ATATGGGGATGATAATGGGATTTATAACAGCGGAGACAGGCATGTGGCCTAGAGTGTGTTTGAAAATTCATTCCGACAATCTGCACGCCCCACTTTGCGGTATATTTGCCCCCAATTCGGTCAACGTAGCCCGCTACGCCTCCCTCATCAGGGTCAAAGACGCACAGCTTGCCGAAAGCAATTTTTAAACACACTCTAGAGTCCTGGGACTAGAAGGAGAATTCCCGGACGGGGAATATCAAAAATATTTTTGTGAAGAGTATCCTTTGGGGTGGGAATAGGAGAAAATGTTTCTGGAATAATTGAAGGGAGGGTGTTATAATAAAACAATACAGGGTAGTGCGAAAGGTAAGTGAACATAAATATATGGAGGGATTCGCACTGATAAAAGAATGGTTTATGATTTGTTTTGGTAATGGGATTAGGGGATGTAAGTGTAAAATTGGATGTTTTGTATAAAAAATGGTGATTAATAATGTGGTTGTTTGGATAGAATTGCC # Right flank : TAATTACATGGCGATGGCCGGGTGAAAAACGCAAGCTCTCCAGCTTCGCACTGGAGTATAAGCACAAAAATTACTACAAGCACAAAATACAGGAGATACCCATATGATATACCTGGAAACAGAACGTCTCATCTTACGGGATTACACGGAGAACGATGCAGAAGAGTACAGCAGACTTATGGCTGATGATCAGGTGATGTATTATCTTCGGGATATTCAACACCATTCCAGAGAGGAATCGGAAGAGGATTTTAGAAATATCCTTCTGGATATGCGGGAGAAGGACAGGCAAAGATATTTTCTTCATATACAGAAAAAAGATACAGGAGAACAGATTGGAAGCATTGGTTATACGGTCACGGATACAACTCCGGCAGGAAAACTAGTGCATCTGGGATATTTTACATATCCGAAATACTGGGGTTGCGGTTATGTGACTGAGGCGCTTGAAAAGGTAATGGAATTTGCTTTTTCCCAGGATGGTGTATACCGCATCACCA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGGCTTTGCGCTGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 2 298481-299507 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCLI010000004.1 Blautia producta strain DFI.1.120 AJFFBIAM_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 298481 32 100.0 36 ................................ ATGAGTATCATCTTCCGCTTTCTGAAAGCATACAAA 298549 32 100.0 34 ................................ TCTGTAGTTCGCGCGGACTGTGGCAATGCTGCTT 298615 32 100.0 34 ................................ ACCAATCCTGTCAGCAATCCTCTGGGCGTATGGT 298681 32 100.0 34 ................................ AAAGTAGCAGACATACACACGTATCTATGTATGT 298747 32 100.0 34 ................................ CTTTAAGTCGGCTAAATAGTCCTTCACGTCATCT 298813 32 100.0 35 ................................ TACTCCGGAACCCCCGGCTCCGGGAAGTCCCTGCA 298880 32 100.0 34 ................................ CGGTTGCACCGGATACGGCAGCCACTTTTGACAT 298946 32 100.0 35 ................................ AGTGTAGGCGTGCAGATATTGGCAAATGTACTACA 299013 32 100.0 35 ................................ TAAGAAAACATATTATTGCTTATAAAACGCAGATA 299080 32 100.0 33 ................................ ATCTGTACAGTCGTACACCGTATGGCCTTCCGC 299145 32 100.0 34 ................................ AGATTCTCAATGTCAGAAAGATATCTTACCAAAT 299211 32 100.0 33 ................................ AGGGACCAACTTGCACAGATACCGGAGGACGGA 299276 32 100.0 36 ................................ TGAATAAATCATATATATTTTCTATAACATTTTCAT 299344 32 100.0 34 ................................ AAAATAGTATCTATCAACCCATCGCGAAATTCGG 299410 32 93.8 34 .......T..................C..... CAGCAACAGCAGTTTACGTTCCCCATTGACACCT 299476 32 78.1 0 ........T......A....A.C.GC.....G | ========== ====== ====== ====== ================================ ==================================== ================== 16 32 98.2 34 GTCACTTCCCTTGCGGAAGTGTGGATTGAAAT # Left flank : TTGTGCCGATTCTGGAAGCTGGTAAATTTTTGCGTGTTGGCAAGGGGGCTACAATCGGCTTTGGACACTATGAAATTTCTTATGATAAATAGAGGAAAGAATGAAAAGATAGTTTAAAATCGTAGTTTACGTATTTAAATAAAGTATATTTGGAAATTGCTTATTTATCATTTTTAAGCAGAATAGAATGAGTCTAAATTATCAGCCCATTATTCGGTGGTGTTTCCATGGACTTCAATAAGGACTTCATTATTGCGGCAGTTCATATTGAAGGTAATAGGATAGGGACTCGGAGTTATAAGAGTTTTATAAATGTCAGGTGCGAATATGGAGTGAACATAGTTTTCCAGGGAGACTCGCACCTGAAAAAAGTATAAAAATGTGTAGTTATGGCGAATTTATGGATTATATTTCAACTTAAGGTTGCATTTTTTAGAGAAAAAGGTTAGAATTTAGTGGAAAGATACAATATTTATATAGTGATATTGTGCATTTTTGCT # Right flank : GAAGTAAAAAGGATATTATTTGTATGTAATACGAACATCACCTCCCATGCACAAGTGTAGATCACAACTGTCTAACCATTGTCCACCATATATCTATTTGAACGTTCTAACCATATAAAATCGAAAATTTGCATTATAAAAATTAAATAGAATATTTCCGGACATTCAAAGCCGCTTCCTTTACAGAGTACAGTTTCATAGCCCTATTCTATCGGCACGCAATTTACTATAAAAAGCTGAATTTAAAAACCTACACATATAAAACTATAAAAATAAGTTACCAAAGGGAAGTTAAAATGGTGATTGCCACAAGAAATGATATTTTCACAAAAATTCATGAGCATAGAAATCAAAACGAACATTACCCTGGGTAAGACAAGGAATCTTCACCCTATTCTGCAGAAAAAAATACTCCTTTTTGATAAGGATCACCATACTGGATTCTTACCGAAAAGGAGTTATTTATACCCCAAAGCTTAACAGCTCTGTCATTACACATT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTCCCTTGCGGAAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 325400-324945 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCLI010000007.1 Blautia producta strain DFI.1.120 AJFFBIAM_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =================================== ================== 325399 25 76.0 35 ....CA.A...........CTC... ACCTACCAAGTACCAACCGGTCTTCATGCCTCCGT A [325388] 325338 25 100.0 35 ......................... GCCCAGAGACAACCATCCCTGTGCCATAGCTCCAT G,GT [325330,325333] 325275 25 100.0 35 ......................... GCCAGTCATGAGCCAACCTGTCTGCATTGCTCCGC 325215 25 100.0 35 ......................... TTTCTGATTCAACCAGCCAACCTGCATTGCTCCGC 325155 25 88.0 35 ......G..A...G........... GTTTACCAATGCCCAGCCTTGTGCCATAGCTCCGC T,GC [325145,325150] 325092 25 76.0 35 ....AG.............A..ATT GCCCAGCAATAACCAGCCTGTCTGCATAGCCCCAC 325032 24 80.0 35 .G......T.-...........A.T GCCAACTTTATACCAACCGGTCTTCATCACACCGC A [325025] 324972 25 100.0 0 ......................... | G,GC [324964,324967] ========== ====== ====== ====== ========================= =================================== ================== 8 25 90.0 35 TTCCGTTCAGATAATACCAGGTTCC # Left flank : AGGTCCCCGCAGGAGTCAGCGTAATTGGATTACCTACAGAACAGGTAATTGACTTAACTGGTATAGTCCATCCATTACTGCCATCCTTTGCCAGAACAGTTATCTGACATTTTGTACGATTCACACGAAGTCTGTAAGGTCCGCCTACCATTCCACTTACATCCTGCTGTAAAGCTCCGCTTCCTGTAAAGTACATTTTATAACCCCTGATGTAATGCCATCCAGTTAACATGACACCATTTCCATCGAGATAATACCAATTTCCATTCCAAGCTACATATTCATTCTTAGCATAAGTACCGTTGCTCTTCTTAAAATAGTATGTGGATCCGCTCTTTTCCCAATTTCCAATGGTATTTACATTTACTGTACCATAACCTGGTATCCAACGTCCATTTTTATCAACATAATAGCCGCCAATTGTAGTATCTTTCAGCATGGCTCCGCTACTGCCCACATAATAGTAAGTATCGATCCAAGCATTTCGGGCCATAGCTCCG # Right flank : GTTTATCTTTGCCCAACCCTGAGCCATAACCCCGTTGTCATTCAAATAGTACCAGTTATTTCCCAGTGCAAGCCAGCCAGTTTTCATATATCCGTTGCCGTCAAAGTAATATTTCTGTCCTTTTACTGTATACCAGCAGTTTGCCGGCCAGCTTCCGTCTTCTTTCTGGTACCACCATCCGGTCGTATTCTGCTTCCATCCTTCCGGATAAACTTTATAAGATTTGGTACATTTACCATCTTTGTCAAAGAAATACCTTACCCCTTTTACAACAACAGATGTATTTTTCTTAACCGTGCCATCTTTATTCACGTAATACTTCTTACCATTGATGGTCTGCAGTCCGGTTTTGGCTGTCTGTTTTCCATCCGCACCAAAATAGTAAAACTTCTTACCGTCTGCTATCCATTTGGATTTGGCATAGCTTCCGTCTTCATTCATCCAGTAATTACTGCCGTTTATTTTCTGAAGACCTGTTTTGCCCTGTGTCTGCACACCAT # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.43, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCCGTTCAGATAATACCAGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //