Array 1 4-1526 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLHF01000191.1 Acinetobacter baumannii strain ABBL106 contig-3000016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 64 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 124 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 184 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 244 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 304 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 364 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 424 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 484 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 544 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 604 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 664 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 724 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 784 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 844 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 904 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 964 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 1024 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 1084 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 1144 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 1204 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 1264 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 1324 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 1379 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 1439 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 1500 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 26 28 97.8 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTG # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-749 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLHF01000091.1 Acinetobacter baumannii strain ABBL106 contig-18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 1 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 61 29 96.6 31 ............................T GCAGCTACTCGACATGTTGGTAGGGCAGATG 121 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 181 29 100.0 31 ............................. GATTGAGGCGATTTTTATCGCGGACATTGCC 241 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 301 29 96.6 31 ............................T CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 361 29 93.1 31 A...........................T TATTATTAAACGGGAAAAGTATATTCTTGCT 421 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 481 29 100.0 31 ............................. TCATCAATAAGTTGGCCTTGATTTAAATAGT 541 29 100.0 31 ............................. GATACAAACGAGTTCGCATCTCGACCAGAAG 601 29 100.0 31 ............................. TTATCCAGATAAAACCATATCTACAAAGTGG 661 29 96.6 31 ............................T CAACCTGAACACAGACATACATGTTCTATTG 721 29 82.8 0 ...GC...................AT..T | ========== ====== ====== ====== ============================= =============================== ================== 13 29 96.8 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : | # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1407-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLHF01000412.1 Acinetobacter baumannii strain ABBL106 contig-9000074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1406 28 100.0 32 ............................ GATAATATTGGAACCAGAATATGACAATTAAA 1346 28 100.0 32 ............................ TTCAGGACCAGGCATCTAAATTGTTACCTACT 1286 28 100.0 32 ............................ TGGACTAATTTCTTAGTTACTGACCAACCTTC 1226 28 100.0 32 ............................ TTCAGTAATGCAGCAACAATAGCCCCAATAAA 1166 28 100.0 32 ............................ TGAACACAAGCAGAATTAGAAAACGTCAATTT 1106 28 100.0 32 ............................ AAAACGACCTTGTGACTCTGTGAATTCAATCT 1046 28 100.0 32 ............................ AGTTGCAACTTTAACAACTGACGGTACTGCTG 986 28 100.0 32 ............................ ATAGTGGAAATACACGTAAGTTATTGATTTAT 926 28 100.0 32 ............................ TGTTGTTAGGGCTATTTCTGCTTTATCCGATA 866 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 806 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 746 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 686 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 626 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 566 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 506 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 446 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 386 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 326 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 266 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 206 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 146 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 86 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 26 26 92.9 0 ..........................-- | ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.7 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : A # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 6497-11384 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLHF01000412.1 Acinetobacter baumannii strain ABBL106 contig-9000074, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6497 28 100.0 32 ............................ TGAATAGGTTGTGGCTGTGGGCAAGTTTGATC 6557 28 100.0 32 ............................ CTGGTCAACACGAATTGGCAAATTAGATAACA 6617 28 100.0 32 ............................ TGCACTAAAGAAAATAAGAACTAAATATACTC 6677 28 100.0 32 ............................ AGTTGCAACTTTAACAACTGACGGTACTGCTG 6737 28 100.0 32 ............................ CATTAGTCTAAGAACGATTTTAAAAACATAGC 6797 28 100.0 32 ............................ ATTAAAGTGCAGAGATGAAGAAGTATTTTTAC 6857 28 100.0 32 ............................ TTATAGATGGCTTTAACTGACTCCCAGCCCAT 6917 28 100.0 32 ............................ AAAACGTTGAACATTAGTAAGTGTTAGAACAC 6977 28 100.0 32 ............................ TTACGATGGCCAACAGAAATATTAGACATATA 7037 28 100.0 32 ............................ GATAAAGGTTGTATGCGCTCTAAAGCGTTAGT 7097 28 100.0 32 ............................ AATCCAAACAGCAAAACCGATGATACCTGCAA 7157 28 100.0 32 ............................ AGTGGGCTTATATCTCTTCTATAAAAAACGGA 7217 28 100.0 32 ............................ AATGCTGCTGTTGACGTGGCTGGTCCAGTTGC 7277 28 100.0 32 ............................ GGAGTCAGGCACACTATTAGATAGCAGTGTGC 7337 28 100.0 32 ............................ ATGATGAACCTGTCTTACCTTCAGATCCTTCT 7397 28 100.0 32 ............................ AAGCATTTCAGTTGCACCAAGATGAATACTTT 7457 28 100.0 32 ............................ TCAAGTGCAGATGCAGCCTAATTATTCTTCTT 7517 28 100.0 32 ............................ AAGAACGTTTGGCAGCAAAAGGAACATTACCA 7577 28 100.0 32 ............................ TTATTGTGAGCACCTTGATTGCTGTGCGCTGC 7637 28 100.0 32 ............................ TACAGCGGGAAACTTGAAAGTCATTGCGAAAT 7697 28 100.0 32 ............................ TGATTGCCCCCTGAGGAAACTGTATAAAGTCC 7757 28 100.0 32 ............................ AAACACCAACTAAGCCATTCCCTATTCAAAAA 7817 28 100.0 32 ............................ ATGAACTTTTAATGGATGCATGCGCCGCCCAC 7877 28 100.0 32 ............................ ACGAACAACGATAATTTGGAATACACGCTCAT 7937 28 100.0 32 ............................ TCAGGAGAAAGATCGTTCAAAAGCTCAAAACC 7997 28 100.0 32 ............................ TGAAAGTTTTGATATCCACTCTGCTGTTTCAA 8057 28 100.0 32 ............................ AGATGGTAAGAAAATTATTGAGTCTGGAGACA 8117 28 100.0 32 ............................ CGACAGTCCAGTTGATCAGATCTTGATTAGAC 8177 28 100.0 32 ............................ AATGACATGGTTCAACAATTAAATTCATCTCA 8237 28 100.0 32 ............................ GTTCTTTTCTGCAATATGTGCCATTAGGTATT 8297 28 100.0 32 ............................ ATTTTAGATGAAACAAAAGATAGCAGGATTAT 8357 28 100.0 32 ............................ AGACCAAGCGGATTGACCGTATTGATAAATAA 8417 28 100.0 32 ............................ TTCTGCAATACAAATCACTGGATCAGCCAGGT 8477 28 100.0 32 ............................ TGAGTCTTTGATTTCCCAAATATTACTTGAAA 8537 28 100.0 32 ............................ GAAAAAATTGAAAACTTTTTAGAAGTAAATGA 8597 28 100.0 32 ............................ GCCACACATGCCTAAAAACGCAAGTGCGCTCG 8657 28 100.0 32 ............................ ATTATCAGATAAGCCTTTTATGAATGATCGTT 8717 28 100.0 32 ............................ ATTAGCTATTAGCTTTTTGGCAACAACAACAG 8777 28 100.0 32 ............................ AGTTCATGAAAACAGCTTTAAAAAGAAAGCAC 8837 28 100.0 32 ............................ TCCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 8897 28 100.0 32 ............................ TTGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 8957 28 100.0 32 ............................ TGGTACGACAACTACGAAAAGCTGAGCAAAGT 9017 28 100.0 32 ............................ TCAACTTAAATGGATGCTCCCCGCGGTGAATT 9077 28 100.0 32 ............................ TTGATTGCTAGACGGATTTTTAGGCAGATCAT 9137 28 100.0 32 ............................ GAGTTTAATGCGCTATATGGCGACGAGGATTT 9197 28 100.0 32 ............................ CATGCAATCGCGTTGATTACCGCAGCTTCGAA 9257 28 100.0 32 ............................ ATGAGCCGCAACCATACGGTCTATGACTTCCA 9317 28 100.0 32 ............................ ATAGCGCCCTGCTCTATGTTGTCACTTCCGAA 9377 28 100.0 32 ............................ TCCAAGTGAATCGGCTCCTAATGCAAATGACC 9437 28 100.0 32 ............................ TGAAAACCAATATGCTGCCTAATTGCCATAAG 9497 28 96.4 32 ....A....................... GATCTGCGTCCATTTGTACTTGCTGCGGGTGC 9557 28 89.3 32 ....T.......AT.............. ATATACAGCACCGCTTAGTGCGACGCGGTCAT 9617 28 89.3 32 ....T.......AT.............. GCCCACAGGTTGAGCATCAACGGCCATCGAGA 9677 28 89.3 32 ....T.......AT.............. ATCATAGAGCTCACTTTGTCGTTGAGCCTGCA 9737 28 89.3 32 ....T.......AT.............. AGAAGGCCCGTAATTTAACTGTAAGCCGTGGT 9797 28 89.3 32 ....T.......AT.............. TCTTCCTGAGTTTTAATCCCATTTGCCTTACA 9857 28 85.7 32 ....T.T.....AT.............. CATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 9917 28 89.3 32 ....T.......AT.............. TTCAGGGAATTATCGTGAAACTTTCATTGACT 9977 28 89.3 32 ....T.......AT.............. TGCACCAGCTGCTGGCTGGTTGAAATCTGCAA 10037 28 89.3 32 ....T.......AT.............. AGAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 10097 28 89.3 32 ....T.......AT.............. TGTTTCAAAAGCTACACCATCAAAACCATTGC 10157 28 89.3 32 ....T.......AT.............. TATTTAAGTAATAAGTTTAATAACGACCTAGT 10217 28 89.3 32 ....T.......AT.............. AACACGTTCTCTATATCGCTGTTTGCGGTCAT 10277 28 89.3 32 ....T.......AT.............. TTCAGTTGGATATGCCTTTGATACCAAGAAAC 10337 28 89.3 32 ....T.......AT.............. GCCTGCAGACACGGATTTACGCAGCTGATCGA 10397 28 85.7 32 ....T.......AT...........C.. TAACCAAACTATGTCATCGATCGGAGATTTCA 10457 28 89.3 32 ....T.......AT.............. TTAAAATAAATGCCTGTGGTTTTTTCTTAACT 10517 28 89.3 32 ....T.......AT.............. AGTTTCCGAAGTTGAATTACACTCGCCAAGTT 10577 28 89.3 32 ....T.......AT.............. TAACACAGTGATTTGATTACCTTGAGCAACCC 10637 28 89.3 32 ....T.......AT.............. ATCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 10697 28 89.3 32 ....T.......AT.............. TCATCCACCTTTGATGAAACGGATCCACGCAA 10757 28 89.3 32 ....T.......AT.............. TCTTGTGTGACGGCCTCCACTCCAGATCCCGC 10817 28 89.3 32 ....T.......AT.............. TTAAGCTTCAAAAATAGCCATTGATTATAAAA 10877 28 89.3 32 ....T.......AT.............. TGACAACTTTCCACGGCAATCAGGGCTTTCCA 10937 28 89.3 32 ....T.......AT.............. TAAAGATGCACGTGGCCTAATGCAAGTTATTC 10997 28 89.3 32 ....T.......AT.............. TTTAAAATTAGGTGCTGAGTTACCACGGCTCA 11057 28 89.3 32 ....T.......AT.............. TAAACCAAGAACTTGAAGATTTTGATGCTTAT 11117 28 89.3 32 ....T.......AT.............. TAAAAATAGTGTGTTAATTATTTATGATGAAA 11177 28 89.3 32 ....T.......AT.............. CGTATACATGCACATCAATACGATATCCCGAT 11237 28 89.3 32 ....T.......AT.............. ATACTATTATAATGATCTAAACCCATTACAAC 11297 28 89.3 32 ....T.......AT.............. TGCAGCTACTCGACATGTTGGTAGGGCAGATG 11357 28 89.3 0 ....T.......AT.............. | ========== ====== ====== ====== ============================ ================================ ================== 82 28 95.8 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : CAGTC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : GTTCTTCATCGCATAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //