Array 1 2019-60 **** Predicted by CRISPRDetect 2.4 *** >NZ_JEMA01001173.1 Sorangium cellulosum strain So0008-312 scaffold7923, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 2018 36 100.0 39 .................................... AGGAGCTCGCAAGCGAACGCGTGATCCGTCTCGGTGGCC 1943 36 100.0 37 .................................... CCCCTCAAGGTCTGCGACACGAACGACGATTGCGGGT 1870 36 100.0 40 .................................... AGCACCTCGAACGCGCCCGTGCTCACATGAACCCCGCGGC 1794 36 100.0 36 .................................... GAGGGGGCCGACGCCGAGCAGCGCGCGCGGGAGTAC 1722 36 100.0 36 .................................... CGCGGCATGTCCTCTGGCATGAGACGGCACACCGCC 1650 36 100.0 39 .................................... AGGTCAGCACGGTCCGGCAGTACGCGACGCACGCCGGCA 1575 36 100.0 36 .................................... CAGCGGCGCGGAGCCGTGATGCAGCTTCGGGCCGAC 1503 36 100.0 36 .................................... CCAGCGCCCGCTGTCGAACACCACGTGACGCTCGCC 1431 36 100.0 38 .................................... ACGCGCTTCGGGCCGAACGACGTGAGCGAGGGGCGGGT 1357 36 100.0 36 .................................... GCGTATCAAGTGCGCGCGAACGCGGTCACCGACGGC 1285 36 100.0 39 .................................... GACGCCGTCGTCGCAGCGAAGGCGCCCACGCCGCGTGCA 1210 36 100.0 40 .................................... GGCATCATGGCGTGGGTCGCCGACGGCGAGCGGCAGCGTA 1134 36 100.0 38 .................................... GAGAGCGGGCCGGACGACGCGAAGGTCGCGCGCAAGAT 1060 36 100.0 38 .................................... TCGATCGAGAGCCCGGACGTCGCGCGGAGAAAGGCGAA 986 36 100.0 44 .................................... GAGGTGCGAGATGCTGATCATCGAATGTGCGCCCCGCTGGCGAG 906 36 100.0 38 .................................... CGCCGCCCGGCCGTGTGGGCGCTCGCCGTCCGGATGTG 832 36 100.0 39 .................................... GAGAGCTTGCCCGGGGTCGGGCCGCCCACACCTTTTCGT 757 36 100.0 38 .................................... TGTTCCTGGTCGGGGCCCAAGTGGCTGCTGACCGGGAG 683 36 100.0 39 .................................... GCGTGGGTAAGCTCATCGTCAAGAACGCTGTCACCGGCA 608 36 100.0 39 .................................... GGCTCCACCACATGGCCCAGTTGAGCGAGCTCGTGACCA 533 36 100.0 35 .................................... TTGCCGGTCCGAAGGGAGATGCCAGCGCCTGGCAC 462 36 100.0 39 .................................... GCGAAGCCATGGCGCGTCCTCGAGGAGGATCCGGCGTTC 387 36 100.0 37 .................................... GTCAACGACAAGTGCAACGACAAGGCCGCCGCGATAG 314 36 100.0 38 .................................... CAGGCACGCTTGTATGCGGCGTCGTCCTCCGCCTCGCG 240 36 100.0 36 .................................... AGAACAGCGCCGGCGTCCTGGGCCCGGGGATCGACG 168 36 100.0 37 .................................... ATCGAGAAGATCAGGAGCATGGACCCAGGTCCTCGGA 95 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 27 36 100.0 38 CTCTCCGCCGCTGAAAGGCGGCGGCCCCATTGAAGC # Left flank : TCCCCCTGGACGGAGGGAGCGGCCCCCGGCTCGGAAGGCGAGCGCCCCGCGGGGGATGACGCTGGCGAGGTGGGGGGTGAGTCCGGCGGGGCGGGGGATGAGTCGGGCGAGGTGGGGGATGAATCGGGCGAGGTGGGGGCCGAGACGGTCGAGGCGGGGAACGCGCGCGGCGAGGCGGGGGCGGCGGCGCCGGAGGCAGGGAGGCGAGCGGCGGAGGTGGTGCTTATGGCGGCAAAGCGGACCGGGAGAACGGAAGGGCTGGGCAAGGGGAGGAAGGGGCGTGGTAGAAGAGGGCGGGAGCTCCGGCTGCGAGCCGGTGGAGTGACGCGGAAAAGCCGGGGGGCGCTCGCAAGGCCGGCAGGTGTTTGAAATAACGAGGGATTTTCGGGTGGCCGGGGGCGCGCGGAGGTGCCTCCGACCGCCGGAGCGAGGGGCCGGACGGCAACCTCTCGCAAACCAGGTTGCAAGTGCGCGAAATGTCAGGTACTCCTCGGAGGCAC # Right flank : CAAGCTCCCGCTCACGTGGGATGCGGAGCGGAAGGTTCCCTCTCCGCCGCTGAAAGGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCCGCCGCTGAAAGGCGGCGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.20,-13.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 28239-36580 **** Predicted by CRISPRDetect 2.4 *** >NZ_JEMA01001018.1 Sorangium cellulosum strain So0008-312 scaffold7661, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 28239 36 100.0 36 .................................... CCGGAGAACCGGTGAGGCTACCGTGCCCCATGAGAA 28311 36 100.0 36 .................................... GCGCCTTCCCGACGGGAATCACCTCGATCCGTTCCA 28383 36 100.0 35 .................................... CCTGAGCTTGCCCGCCCTGACGGCCCGCCTCTGGA 28454 36 100.0 35 .................................... GTGCGGGTGAGCGCCATGCTCGGGGTGGGACTTTG 28525 36 100.0 37 .................................... TCGCCGACGAGTTCCGGCTTGTCCATCGCGACGGCGA 28598 36 100.0 35 .................................... ACCCGCGACGAGCTCGGCGAGAAGATGGCGTGCAG 28669 36 100.0 35 .................................... TCGCGATCGCGCCTGTGCACATGCACCGCGCCCAT 28740 36 100.0 35 .................................... AACCTTCGCGTGCAAGGGCGGCTGACGCGAAAGGA 28811 36 100.0 36 .................................... CGCGTCAGCACCGCGCGCGAGGCGTCGCGCCGGGTC 28883 36 100.0 34 .................................... TACGACTCGACCTGCTCGACGGACACGGTCGCCG 28953 36 100.0 35 .................................... ATGGCACTGCGCATAGCAGCGATCTGCTTCTTCGT 29024 36 100.0 36 .................................... CAAGATGTCGCGGACATGTGGGAAGAAGTCGGGGCG 29096 36 100.0 34 .................................... ACCTCGAGCGCCGGGTCGCCGCACGGATCCTCGC 29166 36 100.0 34 .................................... CTCTCCAGCGTGCGCCGCGCCGCGGCTCGCTCCT 29236 36 100.0 34 .................................... ATGGCGACGACCGCGCCCTGATCGGGCTCGGAGT 29306 36 100.0 36 .................................... AACTCCACGTCCCGCGCCGTCTGCGCCCGCGCCTCG 29378 36 100.0 34 .................................... CTGAGCGAGACGTTGCATGATGGCGATCGCGTCT 29448 36 100.0 34 .................................... ATCTGCCAGTCGAGACCCGCGACGGAGCTCTCCC 29518 36 100.0 36 .................................... AGGCCTCCGCGGGAACGAAGGCTACGCCGATCTCCT 29590 36 100.0 38 .................................... TTCGAGGCCAAGGCGTACATGGGCTGGGACATCATGGT 29664 36 100.0 35 .................................... AGGCAGAAGCTGTGCGAGGTCTACGGCGACAACGT 29735 36 100.0 35 .................................... CCGCGGCGCGTGTGGTCTGACGATGAGGCGCTCGA 29806 36 100.0 35 .................................... GCGACCCCCCCGCCCACAACGCCCGCGCCAGCGAT 29877 36 100.0 34 .................................... ACTCGGGACATGAGATCCACGGAGGGCCCGAAGA 29947 36 100.0 34 .................................... CCCGCCGCGGCGTTCGAGCAGCTCATGCAATCGA 30017 36 100.0 33 .................................... CTGGACCCCGGTCGCGATCCGTCGACCGGAGAG 30086 36 100.0 37 .................................... TGTGCTTTTCGAGCCATCGTTAATGGTTGTGAGTACT 30159 36 100.0 37 .................................... CTTATGCTTGGCTTACCAACAACCCGGGACTTGTTGA 30232 36 100.0 34 .................................... TTGCCGATGAGGCCCGCCGCTTCCGCCGTGAACT 30302 36 100.0 34 .................................... CGTGACGCTGTATCGTAGAGGCGCTCGGCCTCTC 30372 36 100.0 36 .................................... CACCGCGCACCTTCCAAAGCGCCTCGCGCGTCGGGG 30444 36 100.0 35 .................................... ATGTCTCCCACGCGCGGAACGTCGCCTGTCCACTC 30515 36 100.0 34 .................................... TCGGTGAGGTGAAGATCGGCGCGCATCAGGGGGT 30585 36 100.0 34 .................................... CAGGTCGCGGCGCCCGCCGTTGCGGTCGACTGGA 30655 36 100.0 37 .................................... GCGTCGTCGGCGTCGGCGATGCCGTCCCTGTCCCGGT 30728 36 100.0 35 .................................... CTCTCCAGCGGGATGCACGCGGTCTTCGTTCGCGT 30799 36 100.0 38 .................................... GTGTCCGGAACCGTCTTCGCCGCCGGCGCGCAGAACGG 30873 36 100.0 36 .................................... GAGACGGGCCACACGGAGATGTCGGCCCTGGCCATC 30945 36 100.0 35 .................................... AGCCGGCTGGTCATCGCCGTGGCCGCGGTCTCGTT 31016 36 100.0 33 .................................... ATTGGACAGCTTCCCGCCTACGTCGACACGGAC 31085 36 100.0 36 .................................... AGCAGCGCGTCGACGGGCAGCTTCGAGAACGCCTGG 31157 36 100.0 34 .................................... ATCACGACCGACGGCGCGTGCGTGCTCCCGCCGT 31227 36 100.0 38 .................................... TCGCGCAGGTCGACATCGATCCCGTGCGCTCGATACAT 31301 36 100.0 37 .................................... TAGATGTGCGGTCCGTAGATCGAGCCGATCTCGGTCA 31374 36 100.0 33 .................................... ACGCGGCTCAGGATGTCTCCCAGCGACTCCGGT 31443 36 100.0 35 .................................... GCCGACTGGATCCAGGACACGATTGCGATCCAGGT 31514 36 100.0 33 .................................... CAGAGAGCGGGTGACGTGTCCCCGAAGACGGGA 31583 36 100.0 34 .................................... CTCGGCGGGCGCTCCGGAAAGAAGGGGAACGGGA 31653 36 100.0 36 .................................... AACCAAGGCTCTAACGTCATGTCCACGGACATGCAG 31725 36 100.0 34 .................................... TAGACACCACCCTGCGTGATACGTTGCGTGACCA 31795 36 100.0 35 .................................... GCGCGTCGCGCATCACCCGCGACCTGTACCAGCAG 31866 36 100.0 37 .................................... GTGACGCCCCACATGTCCGTCCGGAGGTCCGTCACGA 31939 36 100.0 35 .................................... ACCGTAGACGCGACTGCGCACGCCAGCGACGTCTT 32010 36 100.0 35 .................................... AAGTATAGCTTGGTGTTCTGATCCACCTCCAACAT 32081 36 100.0 34 .................................... GAGCAGTCAAGAAAAGGTATCTCTGCGATCAAGG 32151 36 100.0 34 .................................... ATCGACCCGACGGACATCGAGCGCGCAGCCATCC 32221 36 100.0 36 .................................... GGCTGCGAGGTGGACATCGCGGACGTCCACGCCGCC 32293 36 100.0 36 .................................... AGTCCGTTTTCGAGGAGATCAGCTTGGTGAACGAGC 32365 36 100.0 34 .................................... GCCCATGTCCCGGTGGGTCAACAAGCTCGCCGAA 32435 36 100.0 35 .................................... GGGCTTCTGATGATGCGCATCGTGCTCCGCGCCCT 32506 36 100.0 33 .................................... ATCAAGCAGCTCCTCGGCGTCATCGTCGAGGGC 32575 36 100.0 33 .................................... GGTGCTGCGGAACCTCTGGCCGGTCCAGCCCTT 32644 36 100.0 34 .................................... TCGCGGCCATCGACGACGAGGAGATCATCCTCGG 32714 36 100.0 37 .................................... CTCCTCGCGGGGTGCGGCGCGATGGTGCCCGACGCGT 32787 36 100.0 35 .................................... CTAATGCGCGAAGGACACCTCGTCGAGCCGATTAT 32858 36 100.0 35 .................................... AGATGGAGGCGCAGCGCATTCGCAGCCTGACGCTC 32929 36 100.0 34 .................................... TCGAGAAGTTGAATGCCGTGACGCGACCCCCGGT 32999 36 100.0 35 .................................... ACCGCGAGCGTGCCGCTGCTGTTCGATGCGACGAC 33070 36 100.0 35 .................................... TGCTGGATCTGCGCGACCAGTACGGCCGCCATCAC 33141 36 100.0 35 .................................... CTTCCCTGCGGTCGACCATAGGCGCCTCGCTGGAT 33212 36 100.0 35 .................................... TCCCTCGGTCTCGAAGGGGAACTGGGCGACGAGCT 33283 36 100.0 36 .................................... CTGTACGCGCCGCTCCTCGGCCTGGTCGACGACCTC 33355 36 100.0 35 .................................... TTTCCGGCGCACGCGCGACCCCGCGCGCATCATGC 33426 36 100.0 35 .................................... GTGATGTGGGGCGCATCGCGGAAAGCGTGGCTTGT 33497 36 100.0 34 .................................... ACGTAGCCCCCGTCCCCGCGCACGTCGATCCCCT 33567 36 100.0 36 .................................... GCGATGCCGGACGCGCAGCTCGCCGCCGTGGTCAGG 33639 36 100.0 35 .................................... CTCGAGGCGATGTATGGCGTGATGACGAGGAAAGG 33710 36 100.0 37 .................................... CATCTGCAGCGCCGTCTTGATCTTCCCGCCGTCGCCC 33783 36 100.0 35 .................................... TGGTGGGCGATGGTAGTGAGCGCTTGACCAGGGGT 33854 36 100.0 35 .................................... AACTGCGGGTCGCCGAAGCACTGCGCGGTGCACTT 33925 36 100.0 34 .................................... CCTGAGAACCGGTGAGGCTACCGTGCCCCATGAG 33995 36 100.0 34 .................................... AGCAAGACAGAGAAGAACGTGAAGAGCGGAAACA 34065 36 100.0 34 .................................... TGGCGCAGGTCCTGGACATCTACGCCGAGGCCTG 34135 36 100.0 36 .................................... TAGTGGGCAATCCACAGCGATCGCGCCGCGAGCTCG 34207 36 100.0 35 .................................... TTGAGAGACAACTAGGTGGAAAAACCACGCTTGCT 34278 36 100.0 37 .................................... ATGGATGGGAGCCGGTCGACGTGATCACGCACCACTT 34351 36 100.0 33 .................................... CGCAGAGGCACCCAGACGCGGAGCCGGTTGAGG 34420 36 100.0 34 .................................... ATGACGGCGCCCACGACGGCGCGCTTCTGGCTCA 34490 36 100.0 34 .................................... ATAGGCATCGCCAGCAACATCGCGCGCGCGGCCC 34560 36 100.0 35 .................................... ATGCGCGGGGTGTAGTCGCCATCCACGCGCATGGT 34631 36 100.0 34 .................................... AACTTGGCCGTCTGCATGCGCGACGCGCTCGCGG 34701 36 100.0 34 .................................... CTCACGTCGCGGGCCTACCTCGGCGAGATGACGA 34771 36 100.0 37 .................................... TCGCCAGGCGTTCACCCCGCTGTCGCGACGCTCTGCG 34844 36 100.0 36 .................................... GGCATCTTCTGATGTACACCATCCAGCTTCAAGTCG 34916 36 100.0 35 .................................... TGAGCATCGACAGCGCGCAGCGCGACGATGACCGC 34987 36 100.0 34 .................................... CCGGGGACCACAAGGAAGCTGTCCGCCATCGGGA 35057 36 100.0 38 .................................... CCGAACCAGCGCATCCCGCACTGCGTGAAGGACGCCAT 35131 36 100.0 35 .................................... CTGTGCGGCGGTCCCTGCCAAACCTGCGGCAGGCC 35202 36 100.0 35 .................................... TCGTAACCAGGGAGTGGAGAGGCCGGATCCCGCAG 35273 36 100.0 34 .................................... CTCGAGCCGCTGCGCCCGGATGCGGGACCCGTGG 35343 36 100.0 34 .................................... TACCCGAAGAGCTGGTTCTTCCCGCCGCCGTGCT 35413 36 100.0 36 .................................... AAGGGAGCGCAGTTGCCGGCCCCGGCTGCGCCTCCG 35485 36 100.0 35 .................................... CAGCGACGAGATCGCGACCTCGAGCCCCTCGCGCC 35556 36 100.0 34 .................................... ATGGAGGTGACAGATAATGCGCTCGGCATACTCG 35626 36 100.0 34 .................................... AGAATTTTTTTTCAGGATCGCAAGGTTTGGCAGC 35696 36 100.0 34 .................................... AACGGAGCGACGCGGCCGAACGGCGACACGGCGC 35766 36 100.0 33 .................................... TCCCGGAGGCGCTTGCGGACCGCGCGCTGCCGC 35835 36 100.0 37 .................................... AAGCTCGGCCGGCGCGACATGCAAGCGGGGCTGACAG 35908 36 100.0 37 .................................... CGAGGCTGTGGGCTTCTACGTCTCGCGCCTGCCGGGC 35981 36 100.0 34 .................................... ATCGCCGCGCCCATGCGGCGCACCGCTTCCTCGA 36051 36 100.0 34 .................................... TACGTCACGCAATCGGAAACCGCGTGCTTCTGCA 36121 36 100.0 35 .................................... TACATCGGCGAGATCGAGGCGACGATCGCGAGCAT 36192 36 100.0 35 .................................... GCTTGTGGAGCGACCGGATGCTTTCGGAGGGGTCC 36263 36 100.0 35 .................................... ACGCCCTTCAAGATTACTTGAGGCATTTCAGATTT 36334 36 100.0 35 .................................... CTACACGACCCGCGAGACGAAGGCCGAGGAGCGAT 36405 36 100.0 34 .................................... CGGGAGCTCGGGCAGGGGGACAGCGGTCCTCCTG 36475 36 100.0 34 .................................... GAGTGGGCCTTTCCGGTCGCGCCGTGGACGAGGA 36545 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 118 36 100.0 35 CCGATCCCCGCCGTGATGCCGGAAGGCGTTGAGCAC # Left flank : CGAGCCCAAGGCGCTGCGCAAGGTGCACAAGGTGCTGAGCGCGTGGGGAAAGCCCGTTCAGTATTCGGTCTTCCGCGTACGCGGAACGGCTCGGGAGCTCGCGCGTCTGCGCTTCGAGCTGACCGGGCTCATCGCCTCGGAGGACCGCCTGATGTTCATCCGCCTCTGCCCGGACTGTGCCACCAGGGTTACCGTTCAGGGCAAAGACCTGGCGCCGCTCGATCTGGAGCCACCGCCGTTCCGGATCGTGTGAGGCGGAGGATCATGCACCGGCGCGCGATGCCCCGCGCGCCCAGGTCCTTGACATTCAAACCCAGTAATTACGATAATTTACGTCGTGCCGAGGGCCGGGGAGGTGCGTGAGTGGCAGCAGATGCGAGTGAAGACGCGGCTGGACGAGGAGCGGGCATGCGCGCGGGGCGTGGCCGCCGGTTCGGGAAGGGAGGAGCTTGCGTGGGTGGCGCAAATGATGAACAATAACGGATGGTTACGCGGGCGGG # Right flank : ACGTAGGCCGCCGAGCGCGCGCCCGTCGCAGGGCCGATCCCCGCCGTGATGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCCGCCGTGATGCCGGAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 59-950 **** Predicted by CRISPRDetect 2.4 *** >NZ_JEMA01000499.1 Sorangium cellulosum strain So0008-312 scaffold4763, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================= ================== 59 31 100.0 40 ............................... ATTACATTGATGGTCACTTTGCGCGATGTAAGATGCCGAT 130 31 100.0 41 ............................... TCCGCAGCCTCCTCGTTGTCCGCGCGGACGTAGGAGCCGAT 202 31 100.0 40 ............................... CTCCCGACGCTCGACCGGGAGGAGGTGCAGGCCGACCGAC 273 31 100.0 40 ............................... GTGCGGCGGATGCCTCGGCGCTGGTACTGCACCACCCGAT 344 31 100.0 40 ............................... AGCGGCTGCGCGTTCACCGTGCGCGGCCTCTGGCGCCGCT 415 31 100.0 41 ............................... CGCCACCACCCGTCGTCGTCGTAGCCCATCACCGCACCGCC 487 31 93.5 39 .GT............................ GCGTGACGCTACTCCTTGGCCGGGGGCGCATCCGCCGCT 557 31 96.8 40 .....................T......... ACGGCGGCCAGCGAATCCACCGGGATGCTCATCTCCCGCT 628 31 100.0 40 ............................... GCGTCCGCGGCGGCATCCCGCGCGAGGAGCTCCGCCCGCT TGCCGGAA [647] 707 31 90.3 41 ..A.......G................T... CTCTTCACCCCCATCTGCCGCGGCTGCCTGCACGGGGCGCT 779 31 96.8 38 ......................A........ TGGCCGTACGCGTAAAGCGCCCCTGCCCGTGACCCGAC 848 31 100.0 40 ............................... ATCGACGGCTGCGCCGCGCCAGCGCCGCCGCGAACCCGAA 919 30 80.6 0 ..........C.........T.C...-.T.A | AA [941] ========== ====== ====== ====== =============================== ========================================= ================== 13 31 96.8 40 CCCCGCCGTGATGCCGGAAGGCGTTGAGCAC # Left flank : CCGGAAGGCGTTGAGCACTCCTCGTCCGCGTGCAGGTGTCGACGGCGACGGGGCCGATC # Right flank : AATCTGCGCCTCGTCGGCGCCGCGGATGGGTGCGACACGGACGTGGCACCCGGGTAGGCGCGTCGCCCAGAACGCGACCAGCGGCCGCGCGCGCCGGGCCGCGCCACGAGCAGCAGAATTTCGTCGTGACGCGTCCGTGGCGGTCGCGTAGGGCGCTGGTCACCTCAGTACGGAAGAACATCAGCCGGCTGCCCCGTGGAGCGCGCTCGGTCTCGCCTTGCTGCGCTCCAGCGCGGACGGCGGAATGTCGTTATCGACACAGCGTAATCCCAGCTGCGCGTGCATGCCGGCCGGGCACGGATGCCCTGACGAATGCCTTGAGCTCATCATAGCCAAGGGATATCGACTCCAGAACAGCGGTTGACTCGGGCTGCCGTGCCATGGCCTCCTCGGTGCGAGGGAGGCTGCGATGGCGCCCATTCTCCGACGCGTTCTCCGGACAATCATCCCGCCATTTATGTTTCTCGCGTGCGTGCTCGCGCAGGGGGGATGCCAGTGTA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCGCCGTGATGCCGGAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 11805-13719 **** Predicted by CRISPRDetect 2.4 *** >NZ_JEMA01000789.1 Sorangium cellulosum strain So0008-312 scaffold6797, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 11805 29 100.0 32 ............................. GACGCGCGCGCCGAGGGCGTGATGCTGCACGA 11866 29 100.0 33 ............................. CCGGTGGCGCTGGACTGGTGGAGCGGCGTACCG 11928 29 100.0 34 ............................. GAGCATCTCGGCCACAGCTCGATCACCATCACCC 11991 29 100.0 33 ............................. CTCCCCAACACGCGGCTCCAGCAGCGCGCCCTA 12053 29 100.0 33 ............................. GCTCGTCGGGCTCTGAAGGAGCGCGCTGATGAG 12115 29 100.0 33 ............................. CGCTCCGGGGCGGCGCTGAGTTTCCTCCACTCG 12177 29 100.0 33 ............................. CCGACACGAGCGAGGCGGTCGCGCGATGCGCCA 12239 29 100.0 33 ............................. GTCGTCGTCCTCGGCATCTACGCGCTTTCCGCG 12301 29 96.6 33 ..............T.............. TGCTCGACAGCCAGGCGCAGCACGCAAACGGCC 12363 29 100.0 32 ............................. CGTACCGGCAGGGCCGCGAGGACGCCGCGCCA 12424 29 100.0 32 ............................. CAGACGGCGACGACGCTGGCACGGAATGGCTG 12485 29 100.0 32 ............................. GAGATCCTGAGCGACATCACCCCAGAGCGCGC 12546 29 100.0 33 ............................. TGGGCGGCAGCGGAGACAGCCGGCCTGAACCGC 12608 29 100.0 33 ............................. AAGGCCTTGAGCCTGCCCGGGTGGAGCGGACCC 12670 29 100.0 33 ............................. GTGTACGACGAGGCGTTCTTCATCGACTTCGGC 12732 29 100.0 33 ............................. TTCCCAAGATCCAGTTGAGGAACATGCGGTTCC 12794 29 96.6 32 ..............T.............. CCGGCGCCCGCTGGCGGGGCGGACAGAGGGCG 12855 29 100.0 32 ............................. GTCCCCGACGCGGGGAGGTTGTGGGGCGCGGC 12916 29 100.0 33 ............................. AACGCCTCCACGGTCGTCGCCTGGCCCTGAACC 12978 29 96.6 33 ..................A.......... GGGCGCTGTGAGCGATGCGGGACGTCCGCTCGC 13040 29 100.0 33 ............................. GCGGGGCGCCGCGGGACGTGGCGCGTGGTGATC 13102 29 96.6 9 ............................T ACGCCAGCC Deletion [13140] 13140 29 100.0 33 ............................. AGCGCGGGCAGCGCGAGGCGGGTCGCCGTGGCC 13202 29 100.0 33 ............................. CCGAAGGCGAAGCGGTGGAATGGCGGCGGGCTC 13264 29 100.0 31 ............................. CCGGCGGAGCAGGTGGCCGTGGGCCGAAGCC 13324 29 100.0 33 ............................. TGGAAGACCGAGGTCGTCGCGAGCAACGTGCTG 13386 29 89.7 33 ...........T.............G..C GACGACCTCTGCCATGCCTTCGCGAAGCGCCCC 13448 28 93.1 32 .....-......................C CTACGGGCAGAGGCCGCCGCCCTTGCGCCTGG 13508 28 93.1 33 ....-A....................... TGCTCGATCAGGGTCGCGATCTGGTACACGCGC 13569 29 100.0 32 ............................. AGTGCTGGCCGGAGGATGATTAGGCGGCAGTC 13630 29 93.1 32 ...................C.......G. GTATGCCCGCTCCGGACGGCACGGCCGGAGCC 13691 29 93.1 0 ............T.......A........ | ========== ====== ====== ====== ============================= ================================== ================== 32 29 98.4 32 GTCGTCCCCGCGCACGCGGGGGTGAACCG # Left flank : ACCGCCTCGCTGCTGCCCTGAACCGCCTCGCTGCTGCCCTGAACCGCCTCGCTGCTGCCCTGAACCGCCTCGCTGCTGCCCTGAACCGCCTCGCTGCTGCCCTGAACCGCCTCGCTGCTGCCCTGAACCGCCTCGCTGCTGCCCTGAACCGCCTCGCTGCTGCCCTGAACCGCCTCGCTGCTGCCCTGAACCGCCTCGCTGCTGCCCTGAACCGCCTCGCTGCTGCCCTGAACCGCCTCGCTGCTGCCCTGAACCGCCTCGTCCCCCGGGGGGCCCCACCTTTGAAGCCCTGGGTGAGACGGTCCCTGAATGGGCGTCAGCAGCGTCACGAGACGCTCCGCGACTCCTCCCGCCGCACCCTGGCGGGGGCCGTACCTGGCGGGCGCCGCCCCCGGGTTGCCCGCCGTTGGCGTGGGTCGCCGCTTCGAGGCCCAGGTGCCGCAAGCTAGCGCTGCCTCCAGCGCGTCCGGTCTCCAGAAGGATGACCGTTAGGTCTTGCC # Right flank : GACACTCGCATCATCGCCGCCACGATGCCCAGCTTGCGCGGGGCTCTCAACAGGCTACGGCCTCGCCGGTTCATCACCCGTTACGCCGAACATCCGCTTCACTGCCGGCGACGCATCTCGACGCACCCTTATCGTTCCGTCTGCCTCACGCACAACGTTGGGTCCAAGGACGACAGTGGAATCCGGCCGTCGGAAAGCGGCGGGGTCCAGACGTGATCCGGCATCTGGACCGGCATACCAACCGATCTGCCCGCTGGGCAGCTTTCGCCCAACAATCAGGCCATCACCGTCGATCGGCCAGTCCTCTGGCTTATAGATGCCGATCGTGCCATCCGCGTGCTGAACGATCACGGCCTCCCGCAAGCTATCCAACCGTTCGCGCTCGCGCCTCATCTCTGCGAGAACCACGGACTCGAAACCAGGCGGAGGAACGGACTCTGCTCCCTCGGAGGCTTCGGACGTCGAGCTCTCTGGATCGCGTTTGCCGAGGGACATGCAGA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //