Array 1 2066861-2065134 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070480.1 Rothia sp. ZJ932 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================================================================== ================== 2066860 28 96.4 33 ...........A................ CCCTGTTTTCTGAAGAATATTCGTTGCTTCTAT 2066799 28 100.0 33 ............................ CTACCGGTATAAAGATTCATGGTGTCGTAGAAT 2066738 28 100.0 33 ............................ CTTGAAATTGTTACGAGAGACCGCAGCCGTCCA 2066677 28 100.0 33 ............................ CCCGCACAAACAGACATAAAGAAACCTCTAGAG 2066616 28 100.0 33 ............................ CCGGGCGAATTGAACAACATAGAAACCTTCTGA 2066555 28 100.0 32 ............................ CCAGACGCTTGCCCCTTTTGCTTGCCCCCCCT 2066495 28 100.0 33 ............................ CCGTGCTTAGCCTGGTATAAAAACCAGCCCGTA 2066434 28 100.0 33 ............................ CCAGGAAATAGAAAGTCCGCCGGCCTTGCAAAT 2066373 28 100.0 33 ............................ CTCAATGGCGGCTTGTACCGGGTCATTCGCACC 2066312 28 100.0 33 ............................ CCCCATGGCGCAACCTCGCCACATGGTGGCAGC 2066251 28 100.0 33 ............................ CCCAAAAAGCAGCCCTAAAAGGAGCAACTTATG 2066190 28 100.0 33 ............................ CCGGGGGCTAAGGGTGAGCCTGGGCTGCCGGGT 2066129 28 100.0 33 ............................ CCGTAAAAACGATATCTCGCGCCCCACCGGTAA 2066068 28 100.0 35 ............................ CATCAGCTCGGTCACATTGCTCGTTGAGGCTTTGT 2066005 28 100.0 33 ............................ CAGCTTCACCGGGGGAATCGCGGGTGAAGAGGA 2065944 28 100.0 33 ............................ CAGGCCGCTGCCTTTGAAATCAAGAAGCTGCTG 2065883 28 100.0 33 ............................ TCAGACTTCGAGTTTGTTGGTGTTGGAGACTGG 2065822 28 100.0 34 ............................ CCCCGCAAGAATGATGGTAGTTTGTGGACACGGG 2065760 28 100.0 34 ............................ CCCCGCAAGAATGATGGTAGTTTGTGGACACGGG 2065698 28 100.0 33 ............................ CTGGTCTTGCCGGGGCGCGGGGGTGTGAAAAAA 2065637 28 100.0 33 ............................ CCGAATAAGCCCTGTTTGTGCTGCATGGTGCAG 2065576 28 100.0 31 ............................ TGAAGTTGTTACGAGAGACCGCAGCCGTCCA 2065517 28 100.0 33 ............................ CACTAGGCTCAGGTGTAGGCTCAGGTGTAGGCT 2065456 28 100.0 33 ............................ CTCTACATCGACCACCACAGCACCAAAGACTAC 2065395 28 96.4 33 .................A.......... CGGATATAACGTTAAGCTGTGGAGCAAGGGTGG 2065334 28 100.0 84 ............................ CGAAGCCCTCAACTTCCAGCAACTAGGGGTAAGCCAAGAAGCCAGCCACCAACTCACCGACCTAGCCAAAGCAGGACGAATACG 2065222 28 100.0 33 ............................ CGCCCTGCTGAACAGTACCGATACGCCATAAGC 2065161 28 89.3 0 ....................A..A..T. | ========== ====== ====== ====== ============================ ==================================================================================== ================== 28 28 99.4 35 GTGTTCCCCGCGTAGACGGGGATGAGCC # Left flank : ACTCAGATGAGGCGAAGGCACAAGCGAAAGTACGAGATACCGACGAAACCTTAGAGGTTATCGTGGTGCAGGCTGATGCAACGGGGGAGCAATACAGACCACTCAGCTCAGACTATAAAGGCATCTATTTTGATGTTGAAAGCCCAGAAAAACCCGACTGGAAACTCGCAAATATCTTGGCTGGATCGACCATTCGTCTACCACATCAGTTTGCAGATAACGGTAAACCGGCAGCTGAGAATCCTTTCGACAAAGCGCTGGGGGAACTGGAACGGAACTATATTCCCGGCTGGCAGCAACACTATCTGCTGAAAGACCAACTTACGTTAATGCTTGACGCCAATTACGAATGTTTGCTTGCAGGAAAGAAAATTCGATACTCCCAAGAGCTTGGATTGCAAGTCAGCAACAACGAGTGAGGGTAAACTCTAAAACGTGGCTATTGAGGCAAACTAAATAAATTAGGCTAGGTGAATAGGTGTTACGCCTAGTCACCTAGT # Right flank : TGAGGGGGGCTTCCGCCAAATCTGTAGTCAAATGCGTCCTGGCTCGCATTGCCTGAGGACGAAAACCCTCGACTTGGGCGGTATGCCGTCCCTCGTCCGCGTCTCGTGTGACCGCGAAATATCAGGTGTGACCGTGAAGAGTAATGCTGACCGTACATTTCGTGGTCAGCATTACTTTTGGTGGTCACCTCTTACCTAACCCCACTCGTCCTCACGCGCTGTATCGCGCTGCACCCCTGCACGCCCTACCCCTCCCGTGTTTACCACTGCCCGCTTTCTCGTTCATACTCTGAAATCAAAGTTTTGCGTGCTTGTTAGGAGGTTTTGGGGGCGTAAACTTTACATCTAACACCGCAGTAGATTTTGAAGGGAAACCATAATGCCAGAATTGCGTTCTCGCACCTCTACCCACGGCAGGAATATGGCTGGCGCTCGTGCCCTGTGGCGCGCTACCGGTATGGGCGATGATGATTTCGGTAAGCCCATTATTGCTATTGCGA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTAGACGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAATGCGGGGATGAGCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.80,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //