Array 1 67581-66564 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTV01000011.1 Parabacteroides merdae strain AF26-22BH AF26-22BH.Scaf11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 67580 32 100.0 33 ................................ ATAAGTAGTTAAACCAACAAGAGGAGCAACACC 67515 32 100.0 33 ................................ GGTGTTATTTTGAACGATAACATACAAATGAAA 67450 32 100.0 33 ................................ AAATCCTGTTTCTTTATCTGACACACAGGCGAC 67385 32 100.0 35 ................................ TATTGGAGCCGGTAGACGCCAAAAGCGCGCCATTG 67318 32 100.0 34 ................................ AATACTATACGGATGAGTTTTGTGACCCCTTTAA 67252 32 100.0 33 ................................ ACGGATGTAGATACGATCAAAATCCAAGGCCTT 67187 32 100.0 35 ................................ TGATAAAACAGGAATAAAACACAAAAAACCGTTCC 67120 32 100.0 34 ................................ AGGATTGTATGTAAGTGTAATAAAAAGAGGTGCG 67054 32 100.0 33 ................................ TATTGTGGCAGGAGAAGATGATCCTGAAAAATG 66989 32 100.0 34 ................................ TTGAGACGGATAAAACACTTGGAGCTAATGCTAT 66923 32 100.0 34 ................................ AAGGTCAAAACGCTTATTATTAAGTATAGCGGTA 66857 32 100.0 32 ................................ TGACGGTAATTTAAAGGACGGTCTTACCGTTT 66793 32 100.0 34 ................................ CGTTATATGTTTTATAACATATAGTCGGTTGTTG 66727 32 100.0 34 ................................ AATGGACGAGCCGTTGAAAGAGCTGTCATACTTG 66661 32 100.0 34 ................................ AGTTGACAACCGGTACGCGTGTCCTTCGGAGTCT 66595 32 84.4 0 .......................C....GCCA | ========== ====== ====== ====== ================================ =================================== ================== 16 32 99.0 34 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : TTTAGATAATTATCCGGTCTTTTTAATGAAGTAAGTTCATGTATGTTCTAGTTACATATGACGTAGAAACGATGACTTCCGACGGACAGCGCAGGTTACGTCAGGTAGCACGTCAATGCCTGAATTATGGCCAACGCGTCCAAAATTCCGTTTTTGAATGCTCTGTCTCGCCTGCTCAATTTACCGAGTTAAGATTAAAACTATCGGATATCATCGATCATAAAAAAGATAGTATTCGTTTCTATTTCTTGGGAAATAATTATTCTAAAAGAGTTGAATACATAGGTGTCGTCACATCCTATAATGTAGAAGATGAACTTATAATATAACTGTTTGCGAACATTAAGCATTAACAAAAAGCTGGAGTTTTCGCAATCATTGATTATTAGCCTATTAAACACTCCTATTAGTTTTATTTCATCAATAAAAAATCCAAAAAGTTTATTATCGCATAAATGCATTGATAACAGACTGTAAATGTTTGCATTATTTGTAATGCA # Right flank : GAAGTTGATACACGTGTCATAGCCGTCGCACCCGTAAAGGATGCGACGGTAATGTTATTGTTGTAATTCAGACACATTTCAATCCAAACGCACTATTATAACCAACTCAATCTGTAACACCTATCACATCAACAGTAGTTCCTCTACCCAAGCACCGTCCAAAACCAATCCGGCCCGTTCATCATAACACCTTCCATCTTCCAATATAAAAATCCCAGCATACACTCCCACTGTTCCCTGTTTACATAACTGTTCGAAATCCCATTTTCTAATGGATACGCTATACTGCTGTAGCTTACGTAACAACCAAAATTCCGGGCCAATCCGCTTCAGTTCCTCCAGTAAGGTTGCACCATCACCATAGCCGACCAAGATGGATACCGAGTCTTTATCGTCTATCAACCGGAACTTCTCTGCAGCAGTTGCAAACATAAAGTGCATTTCTGCAAAACCTTTATATAACAGACCTTTTATATTAGCCTTATCAAAGGTGTTACAAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 74418-73261 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTV01000011.1 Parabacteroides merdae strain AF26-22BH AF26-22BH.Scaf11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 74417 32 100.0 34 ................................ AGAAAGATTGACTTTAGCATCAGTTTCACGTACA 74351 32 100.0 35 ................................ TCCTTTGTGTTTGTTGTACCAGTCAAGGCTTTTGA 74284 32 100.0 33 ................................ CCAAAGAGTATTACGATCCGCATCCACTTTAAG 74219 32 100.0 33 ................................ ATTACCCTCATCTTCAACAGGAGTAGGAGATGT 74154 32 100.0 34 ................................ AACAGGATCAAAAGTATGATGACGCTCAGCGTAT 74088 32 100.0 34 ................................ ATGAAGTTGCAAATGTTACCTTAGCATTATAGAA 74022 32 100.0 34 ................................ TAATTCGAATCGTAATTATGGTGGATCAGCTAAA 73956 32 100.0 35 ................................ CGTGCGTATGAGGCTATATATAACGCTTATATTCG 73889 32 100.0 34 ................................ TGTGACGAGGAGAGCATAGTAATGGGTATTATGT 73823 32 100.0 34 ................................ AACAGGATCAAAAGTATGATGACGCTCAGCGTAT 73757 32 100.0 34 ................................ ATGAAGTTGCAAATGTTACCTTAGCATTATAGAA 73691 32 100.0 34 ................................ TAATTCGAATCGTAATTATGGTGGATCAGCTAAA 73625 32 100.0 35 ................................ CCCGACCAAGCATGGACAGTCACCGGCAAAACCAA 73558 32 100.0 32 ................................ TTGTGCAGCAATGGCGCGCTTTTGGCGTCTAC 73494 32 100.0 34 ................................ ATTGCCCTCAAAAGGAATACAATAATCCCATAAT 73428 32 100.0 33 ................................ TTACCAGAGTGCAGGAGTTTTTTCGCAATGCCA 73363 32 100.0 39 ................................ GTCCGTTTTAGAATACAACAGTAATAATGCAACTAATAA 73292 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 18 32 100.0 34 GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Left flank : TACTTCCAGGAGATCCCGTCTCCCCAGAGCCTGTGAAGTCATCCCACTCGTTCCCATCCGCAAGAAACCGAACAACCAGTAAATAATATTGAACAGCATCCCCCCTACCGCAATCGCCCCGATATAGGAAGCGGCCCCCAAATGTCCGACAATCGCCACATCGACCAATCCCAACAAAGGAACCGTTATATTGGATACAATAGAAGGAAGCGCTAACTGAAGTATCTTTTTATTCATTATTTATCGTATCTATAAAAACTATTCCTAACTTTGTCAGCAAAGTTACAGATTACTTTAGAAATAACATGATTACACTTATGTTTCAATAACAAAAACGCGAACCCTAAGTAATTGTAAAAAACGTTGGATGTTCGCATCCTCTATAAATCATACACTTATAGATTTATTTAGAGAATATGAACATTTATTGCTTTTCTACTTTATCATTCGCAAAATTACAATTTAAAAGTGTCATCAATAAAGCTTTTCACAAACATGGA # Right flank : CACTCTTCAAAGGCGCGTTTGAACGTGTCTTTAATGTCGCATCCTTTACGGGGACAACTATTTATAATATTTTTTGCAAGAAGATTACAGGATTAAAATATTTGTTTGTTAGAAAATAAAATATATCTTTGTTGAACAGAGTTATAAAGATACCTTATTACTCAAAGCATAAACACCTTATATTACGTTAACCTAAACATATGATATATACAAATAAAGAATACTGTCTTGAGGTTAAAGGAAGCATGGCCTGCTTTACCCGTCCGGAGATGAAAGTCGAAAGAGTTAGCTACGACATAATAACGCCATCTGCTGCCCGAGCTATTTTCGAATCTATATTTTGGAAACCAGCCATACAATGGAATATTACTCGAATAGAAGTATTAAATCCAATCAGATGGTTTTCCATGAAAAGAAATGAGATTGGAAGTTTAATGAGCCCCCGTTCATCCGGATTATTCATCGAAGATAATCGGCAACAAAAATCCAGTTTGTTACTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.50,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //