Array 1 51677-50629 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZJV01000003.1 Salinicola halophilus strain CECT 5903 Salinicola-halophilus_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 51676 28 100.0 32 ............................ GGCGGACTCGACGCGGCTGTCGAGGCTGGTGT 51616 28 100.0 32 ............................ TTCGCCAATTTCGCAGAAGGCGCCTGGTCTTC 51556 28 100.0 32 ............................ CATAGGACAAAGAGGCGTAGTGCTTGAGATGA 51496 28 100.0 32 ............................ ATTATCATCAATATTAACCTCAATTACATTAT 51436 28 100.0 32 ............................ CTCTTGGCGCCAGTCGATCCATGCCTGAAACT 51376 28 100.0 32 ............................ TTAAAGCTGAAGAAGGGAGAAACAAGCACGGA 51316 28 100.0 32 ............................ AATAGAGATGGCGGGCCGTGAGTCGTGGGGAG 51256 28 100.0 32 ............................ GCATCGCTGGCGTTGCGGTAGGAACGCTCGAG 51196 28 100.0 32 ............................ ATCAAAGCATGTCCGCCGCGCCGGGCGCGGCA 51136 28 100.0 32 ............................ CTTAGGGGGCGGGCTCTATTCGCTACGCTCAC 51076 28 100.0 32 ............................ TACAGGATGGGGTGACGCATGGGACTACTCCA 51016 28 100.0 32 ............................ CAATCGTATCAGACGTGTAATGCTGCTGACGC 50956 28 100.0 32 ............................ ATGTCAATGCAGCGTCAGGCGCACTGAATCCC 50896 28 100.0 32 ............................ CCAGTCGCAGCCGAACTCGGCCCGCCAGGCAT 50836 28 100.0 32 ............................ TATCCAGACTCGTCCCAACATAGTTAGTGATA 50776 28 100.0 32 ............................ TGGAGGCAGCGATGCAGGTTCTCTTACCCGTT 50716 28 100.0 32 ............................ TACCACGATGCGTTCTACACGCAAACCGAGCA 50656 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 100.0 32 GTTCGCTGCCGCACAGGCAGCTCAGAAA # Left flank : ACCCCGGCGACGCGGCAGATCGTCAACCGCGACACGCTGGCCAAACTTCCGCCCGGCGCCAGCCTGATCAACCCCGGGCGCGGCACGCTGATCGACGAGGCCGCGCTGCTCGAGGCGCTGGGCAAGGGAACGGAGGAAGGTCAACTTCGTGGTGCCCTGCTCGACGCATTTCCGGCGGAGCCGCTCGCCGCCGACAGCCCGCTCTGGTCGCACCCGCGCATCCTCGTCACCCCGCACATGGCCGGCCCGACACCGCTTGGCGCCGCGGCGGATCAGGTCGCCGATGCGTTGAACGCGATGTCGAAAGGCGAAGCGGTCGAGACCATCGATCCCGATGCCGGCTATTGAGGCGATGACCGGACGTCCTCAACCCTTTTTTTAGCGGCACTTGCCGTCACCAACAAAATCAATGAGTTATAAAAGCGACGAGAAAAAGGGTCAGCGGACCAAAACGCCGGCCTTTCCATCACCGATCAAAGACTTACACTCAGACAGGTCTA # Right flank : ACGAATGTGGCCGCGGTCGCTGGCGTCGCGTCTTTTCCGCTAGAATCCCGCCCGCTCACATCAAGGGATTCCAGAGATGAAAAGAAAAGAGAGGGGTGTCTCCACCCCTGCCCGCCTATTGCTGATACTGATTGGCGCAGTCATCGCGCTGCTCGGTCTGGGGCTCGCGGTCGGCGGGGGTATGCTGATCGGTCGTGGCGGTAGCTGGTACTACCTGCTCATGGGCCTGGCCCTGCTGGCCACCGGCGTGGAGATCGTCCGCGGTGGCGTCATGGCGCTGGCTATTTACCTGATCGCTTTCATCGCCACGGTCATCTGGGCGTTCTGGGAAGCCGGGCTCGATTTCTGGGCGCTTCACGCGCGCCTTTTTGCCTTCCTCTGCATTCTGTTCGTACTGCTGCTGCTTCAGCCGCTGCTGCTCAAGCGCGCGGGCTATCAGAGCCGCAAGGGGCTGAGCCTGGGGGCTGCGGGCGTTGCGCTACTCGCTATCGCCGGCATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 23684-23894 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZJV01000009.1 Salinicola halophilus strain CECT 5903 Salinicola-halophilus_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23684 29 100.0 32 ............................. CTAGTACAGATTTTTCTGAGCTGCCTGTTCGG 23745 29 89.7 32 ............GA.........C..... CGACCATCAGCTTTAGAACGGCGCGGGCGGCT 23806 29 100.0 32 ............................. GCAAGGTGCGTCTGATCCCCACTGGGGAGTTC 23867 28 82.8 0 ............GG.......-CC..... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 93.1 32 CCGTTCCCCGCACTCGCGGGGATGAACCG # Left flank : GTCCCCTCGACGTTCTCGAGCACCATGCGGTTGCCCTGGGCGAGAGAGACGGCTTCGAGTGTGAGAATCGGCTCCATGGCTCAGCCCAGCAGCCCGCCGGCCCACGCCGCCGTCAGCCACAGCGCGAGCAGCGGCAACAGTGCCAGCAGCATCCGCCGCCCGGCCCCCAGAGACATGAGAGAGAAATGACACGGCCCGTCGGGGCGGTGGCGATGACGATGTGACATGAAAGCAGCCTCTTGATCGGCCGCAAAGGTTATAACATAACAAATGAGGAGGGAAGAGGGCGTGCTTGCCTTCGACTTGCGCTGTCTGCTCACCCTGTGAGAATGATTCGTTGAGCCTACGTGGTGGAACGACTCATTGTTTTTTGATTTTTAGTCTAAGTCTTTGTTTGAAAAGCGAGTTTTTATTGCCGCTCAAGCAGTCACCGAGCGAAATTCGCTGGTGGAAATCAGAGCCCCGATTTTGCTCTTTAAAAACATGAGTTTACAGTTAGA # Right flank : GCTTGCGTTCAACTGTTCGAACAGTATCAGGACCGCCGTTCCATGAAGGCGGAGATCTAGTGTCGAAAGCCCAGCTGGGCAGCACGTCTTCCCACGCGTTTCCATCTCCAACGGTGCGAGATGTCCGATGCGATACCGGCAACGATTGGCGTCTAGATCATCCGTGATACAGCTTTATCGCTTCGCCACGAACTTAGCGGCATGGAGCATCGACAAATCGATTACTGGTGAGGCGTGCGTCATTGGGTGAGGTTTCATTAGTCTCTTGCAGACGCGCGACCAGCGCTTCCACTTGAGCCAGGGCGTCATGGGTCGACTGCTGTAGCCGTTCGCCGCCCTCTTCCTGATACTCGATGGCGATTTCGTGGAAATGCTCGATGCCGATCAGCTCTAGGGCGGTACGTACGCTGGGCTCGAGATGGTTCATGTGCGCCATCGCTCCGCCAGCGCTGAATCCGTGCCCGCCGCGCGAGGAGAGAATCACGGCGTGGCGGGGTCGA # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCACTCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCGTTCCCCGCAGTCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 34575-36162 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZJV01000009.1 Salinicola halophilus strain CECT 5903 Salinicola-halophilus_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 34575 28 100.0 32 ............................ GATCCGCGCGTGCCTGGCCCCTGGGCGGCCAA 34635 28 100.0 32 ............................ CTGCCGCCGGTGCATGCCGAGCTGCCGCCGGT 34695 28 100.0 32 ............................ ATCGCACCGTAGTTGCTGTTCGCGTGTTTGCC 34755 28 100.0 32 ............................ GTAGAAATCCGTCACGCCGCGCGAGTTGTCCT 34815 28 100.0 32 ............................ ATCACGGCTGGCTCGTTGAGCGGTACCGTTCG 34875 28 100.0 32 ............................ TTGATGCGGAGGCTGTGATGGGGCTTCGCGAC 34935 28 100.0 32 ............................ ACTGGGCGACGTTCTGGCAGTACTGGTCCTGC 34995 28 100.0 32 ............................ AGAAAAACGCCATCAAGCAGCAGGCTCACAAC 35055 28 100.0 32 ............................ TGAGTGACGTAGGGCGTCATGCCTTCACCGGC 35115 28 100.0 32 ............................ ACACTCAAGGCCAAAGCGGCCCAAAAAGCGAT 35175 28 100.0 32 ............................ TAACAACTTGAGAAGCGTTAAGGTCCAATGAG 35235 28 100.0 32 ............................ AGGTGCCGTCGTCGTAGTCACCCCACTGGCTC 35295 28 100.0 32 ............................ TGTGCCTCCATCAGTTTGATCTGGAGGTCGGA 35355 28 100.0 32 ............................ AGAAATTATCGTAGAGGTTCGCGTACTGACCG 35415 28 100.0 32 ............................ TGTACTGCCACCGGTGCCGGGGTCATAGCCAA 35475 28 100.0 32 ............................ ACGAAATGTGGCAAGTATAGACGCAAAAAAAC 35535 28 100.0 32 ............................ GTCGACGCGGGCGATGACCTCGTTACCGCCGC 35595 28 100.0 32 ............................ ATGAACAGCAGTAATTAAGCCAGCCCGCCATA 35655 28 96.4 32 .............T.............. TGCAAGGAACGCGTCAAGATCGCGATGGAGAA 35715 28 100.0 32 ............................ AAACGAGTCGAGCGCGAGATGCGCGAGCAGGA 35775 28 100.0 32 ............................ ATAAATCGAACCGCCGGGACCGTAGTCCACTG 35835 28 100.0 32 ............................ AGAGGCCGGCGTTGGTCAGTTTCAGCGGCTGG 35895 28 100.0 32 ............................ AGCGCCAGCAATCCAGATCGGACGTGCGCCTC 35955 28 100.0 32 ............................ ACACCGACGCCCATGCGGTAGCCATGCCTACC 36015 28 100.0 32 ............................ GATCAGTACGGCGCGCTGTCGAGCCGCATCGG 36075 28 100.0 32 ............................ ACCGGCCCGAGCAAACACCCAAGGGCTATCCG 36135 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 27 28 99.9 32 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : ACCGGCTTGATCAGCTGATGGCACTGTCATGGCTTGCGGGCTTGCGTGAACTCGTCGAGTGCAGTGACGTCGCGCCGGTGCCGGCAAATGCTCGCCACCGGGTCGTGAAGCGACGGCAGTTCAATACCGGCAGCCCCAGCCGCGCCCGGCGCTACGCGCGTCGGCATGGCATCTCGGAAGTCGAGGCCGGGGAGCTGATGAAAACGCCGGCCCAGCGACGTGTCGAGTTACCGTTCGTACAGGTGGGGAGTCGCTCCACCGGCGAGCGATTCGCGCTGTTCCTCGAGCATGGCGAGCTGCAGTCTCGACCGACCCACGGGCGCTTCAACCACTACGGTTTGAGTCGGGAAGCGACCATCCCCTGGTTTTGACCCTTTTTGCGGGCGCCAACACGGCGCTCGCAAAATCAATGACTTAGATAGGCGTGATAAAAAAGGGTGTTTGGGGATGAATGCGCCAAAAGCTCTTTAACAATAGAGATTTACGCGCATCACGCGCTA # Right flank : GACGAGATCAATCAGAACCGCCTCGAGGGGCAGTTCGCTGCCGCCCAGGCAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //