Array 1 80824-80589 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGAZ01000001.1 Porphyromonas gingivalis strain H3 NODE_1_length_116860_cov_16.9016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 80823 36 100.0 30 .................................... CAGCGAGACCGCCATAAGGCTGAAAATACA 80757 36 100.0 30 .................................... GGGCTGGTGACAAACGGGGTGCATAACAGC 80691 36 100.0 31 .................................... GCTCCGGCGGGACAGGCGGAAATGGCTTCTG 80624 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 4 36 100.0 31 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : ATATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGCGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGACACCTCGAAAGGCCTTTAGGGGAGGTATAAATAAAGAGGCACCCACCGAGTTCGTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAAGCTCTACCGCTCATACAGCAGGCTTGTATCAGCCATACGCGCCGGCATATAACCACACAGGCGAACGAAACCGGCCGAATAAGAATGCAAGAAAGAGAGGAATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCCGGTACAAATTCACCGAAGAGGGGAGCAGCTCGTCCGCCTGCAAATGTAGCGAAAAAGCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAGGAATCAT # Right flank : TACCCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGGCGGTTCGCACTCAAAAGTTCAACGTTCGCTCCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAACCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGACCGTAAACGATACTTCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 30922-28906 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGAZ01000002.1 Porphyromonas gingivalis strain H3 NODE_2_length_94554_cov_16.0765, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 30921 46 100.0 30 .............................................. AACACGACCAACCAGGAAGAGGTAAACCAC 30845 46 100.0 30 .............................................. AGCGTGTCCTTGCTGATAGCTTTGGCGGCC 30769 46 100.0 30 .............................................. CGCCTCCGTCGTGTCATATACCCAATCGGG 30693 46 100.0 30 .............................................. GTAGAGCGCGGCACCGTGCGCGAAGGGTGC 30617 46 100.0 30 .............................................. GTACTCCTTGTATATCGTACTACATCCTTT 30541 46 100.0 30 .............................................. ATCGCCTTCATAGGCTTCGTGTACGACATC 30465 46 100.0 30 .............................................. GGAACAACGCTTCGGAGTATCATTTTCTTG 30389 46 100.0 30 .............................................. GCTATCCAGTCACACTGGAAAGATGGGCGG 30313 46 100.0 30 .............................................. AAACGACCTACATTTTTATCCGGGGCGGTT 30237 46 100.0 30 .............................................. ATAATGGCTTTGAAGGTTTGTTTATGACTG 30161 46 100.0 30 .............................................. AATGTTTTAGTTTTAATTCCAATCTCGGCG 30085 46 100.0 30 .............................................. TCGTAGACAGCACAAGCGATAAAAAGTTCG 30009 46 100.0 29 .............................................. TGCTGTGAGGATAGTTCTGTCTGACCATC 29934 46 100.0 30 .............................................. GCCATGTACTCTATGGAGATGAGCGGCGCG 29858 46 100.0 30 .............................................. CTGGGGGGTACATCGATTTACTGAAAGAGT 29782 46 100.0 29 .............................................. TAATCATTTGCGTTTGTATTACATGGTTC 29707 46 100.0 30 .............................................. GATATCGAAATAGAAGCCTACAACGCCAGT 29631 46 100.0 30 .............................................. ATTGTACCATTGCGGCGACGGAGGTCTGAT 29555 46 100.0 30 .............................................. AATAATAAACCTTGTAGTTACGACCGACAA 29479 46 100.0 30 .............................................. TATCTTTTCTGTAGTAGTCTGTTATTTGAT 29403 46 100.0 29 .............................................. GCAAGGAGCGCAGCTCCATCGTGTCATAC 29328 46 100.0 28 .............................................. GCGGATAAGGATGCGGGGGTTATTTTTG 29254 46 100.0 29 .............................................. ACAGCGTGAAGTTGCCGGAGAGGTTGATT 29179 46 100.0 30 .............................................. CTTGAGGCGCAAGCCGGATTGAAGATTGCT 29103 46 100.0 30 .............................................. ACAGCGTGAAGTCGCCGGAGAGGCTGATTG 29027 46 97.8 30 ...........................................C.. GGTGATGTTATTGAATTAGATGGAATAAAA 28951 46 91.3 0 .................C.T...............T......A... | ========== ====== ====== ====== ============================================== ============================== ================== 27 46 99.6 30 GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Left flank : ATGAGTCATTACAGATCCAGATATTCAGCCTATAGAAGTATGTGGGTAATGGTATTCTTCGATCTACCTACGGAAACTGCAGCCGACAGGAAACGTGCAGCAATCTTTCGGAAAAATCTGATTAAAGATGGTTTCGAGATGTTCCAATTTTCTATCTATATCAGACACTGTGCAAGTAGAGAGAATGCAGAAACACATTGCCGACGGGTCCGTTCTGCTATTCCTGAAAAGGGCAAAATAGGTTTGATGACAATCACAGACAAACAATTTTCAGCCATGGAGATCATTTGTGGGAAAGGAAGAGAGTATTATCAGCCACCCCTCCAGCTTGAACTTTTTTAAATATATTCTATCATCTTTTGTGGAATTAGTGCTTTTCGTCTGGGGCATAGAAATTAAAAAGCCGAGAGAAATCTCGGCTTTTCAGCTACGCACAGTTGTTTTTTTCTTACTCACAATCACCCTCTATGTCCTGTATTACAGGTGATTACGGGGATTCT # Right flank : AGGCCAGCTGGGGTGTGACGGGGTATAACGTCTATGACTACGAAAAAGACGGGAAAACTTACAGAGTCGGGTTCGAGGTAATAGAGAAAGAGGCTGCGAGGTGGAAGCAGCCGTATTATGTAAAAAAGAAAAACTGATCAGGGTCAGTTACGTGCTAAAAAAATCGCCCGAATTCGCGTCCCTAATCAGCTTTCTGTACTGCAAATATAAACAAAGTTTCTGAAGCTGTGTTGCAACAACATTACTAAATCTGAAAGCTATTCCCTGTGAAAAAAGGGAGACCACGAAAATAATAATCTGCTCAAAAATCATGCGCCAAAAAAGTTTTCAACAACGAAGACGAGTTTGGAACGATTCCAAATAAGTATCTGTAGAGAGGAGAAAAGCAAGGGAAAAGTGCAGGGAAAAGGAACTGCCATAGATCGAAATTCCACTTAAAACAAGTCGGACAACAATCTGTATATAAAGCGTTTTCAATTTGTATACAAATCGTTTTCATT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //