Array 1 229289-226902 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWG010000001.1 Listeria booriae strain FSL L7-0816 NODE_1_length_593824_cov_47.846494, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 229288 30 100.0 35 .............................. ACAAACTTCCCATCTACATAGAATTGCAATTCTTG 229223 30 100.0 36 .............................. TAGTCCAACTGGAAGTTATCAAACCTACTCAGAAGC 229157 30 100.0 36 .............................. GCGATAAATGGTGATTTCGTATAGCCGCGCAGTCGC 229091 30 100.0 36 .............................. TATGCAGTTGCTAAGTCTTGATGTGCAATGTTATTT 229025 30 100.0 37 .............................. ATTCATTAGATGAATTTGAAAAAGTCAAAGAAGTTGT 228958 30 100.0 35 .............................. CCTGTCAGCTTAGAAATTGTGTCTAAAAGACTAAC 228893 30 100.0 35 .............................. GTGTGACCTAATAATTGACCTTTTTTCTTTTTTCA 228828 30 100.0 36 .............................. CTGTTCATTATTATCATATTCCCATTTATGTCTAGC 228762 30 100.0 36 .............................. CCTTTCTGGAGGTACCAAAACAATTTTGTCTTTCCC 228696 30 100.0 36 .............................. CGATTCAGCACTTTAACATAATAGAGCGGCTCCTTT 228630 30 100.0 34 .............................. TTTGGAAGATGATGTACCAATTTGGATGCGTACG 228566 30 100.0 35 .............................. CCAGCAGAGCAACAGGCGTCTTATAACGATGCGCA 228501 30 100.0 34 .............................. TATGTATATGAATGCTGGTAATTATAACTATGAA 228437 30 100.0 35 .............................. CGTCATTTAAGTTTAACGTGTAAACGGATAAATTT 228372 30 100.0 35 .............................. CGATTTCAAAATCTTTGAAAGCCTGTTTCAAAATT 228307 30 100.0 38 .............................. AAACTATAGTAAGAGAAAGACACATCCACGTCATCGTT 228239 30 100.0 34 .............................. TTATTAAAGAAGGGAAAGCACCTAAAAACTCAGG 228175 30 100.0 36 .............................. AAAATATGCTGCTGATATGTCTAACAAAATGATGGA 228109 30 100.0 35 .............................. ATTGGAATAGTTATAACGAGGGATACCTCGACGGT 228044 30 100.0 36 .............................. ATTTTAAAAACTCTAGGAATAATTTTTCGCGTTTTG 227978 30 100.0 35 .............................. AAAAGAATTGAGTGTGAGGGCTAAATGCCCTCCCT 227913 30 100.0 34 .............................. ATATCTCCGTTATCAAAAACAAGGTGTCTACTTT 227849 30 100.0 36 .............................. CTGTTTTGGACGTGTTTTGTTCAAAGTCCATGTAAT 227783 30 100.0 36 .............................. GTTTGATGGATCATATGACATGCTAATTGCATACGT 227717 30 100.0 36 .............................. CACACAAGATATCGCGATGCGGCGCGTTGGAGTAAT 227651 30 100.0 36 .............................. ATACTCGTTTGCATTACCACATATGATGTAGGCTCC 227585 30 100.0 36 .............................. ATAGATTGCCAGCAACGTACAAGAAATCTGCGAGCT 227519 30 100.0 34 .............................. AACTTATCAAATACATAGTTTCGGCAGTGTTCGC 227455 30 100.0 36 .............................. ACGATTATTTGTGACTGGTTCGAGGAAACAATTGCC 227389 30 96.7 43 .............................A TGTAAATTTGGAATATGTGCTACAAAGATAAATGGAGGAAATC 227316 30 100.0 37 .............................. ATAGGTACTATAACGACGGTTGATCACCATGCCTTAC 227249 30 100.0 34 .............................. TCTTGTGTTAGCGCATGAACCAATGCCATATACC 227185 30 100.0 36 .............................. CTTTGTTCCACACCGCAGTAACACCGTTCCAAATAC 227119 30 100.0 36 .............................. TTTCGCGCTTGTCATCGTCTGTCCAAATACGTTCAA 227053 30 100.0 35 .............................. ACAACAGGTGTAGAGCTATCAGGTAAGGCTAAAAA 226988 30 96.7 27 ........................A..... TAGGAAAAGGGCGCACTTATACACCCT Deletion [226932] 226931 30 70.0 0 ......CC.G.....C.A.....CA...CA | ========== ====== ====== ====== ============================== =========================================== ================== 37 30 99.0 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATTTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCAGCACTACTTGCCAAATTGCGAATGGAGTTAGGCCATTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCCCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGGTTTAAGGCTGTTTTTGATGTTCGGCTTGTAAGGTTAGAGAGCGAAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CGGTCTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAGCAATGTTCGCAGCAGTATACTCTACTTTCCAGTCCTCACAAAAAATCCTCGCGATAATCATTAACATACTGATCAAACGAAGTAGCCTCACGGTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACATTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCGGCCACATCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGACCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCAATCTCCCCAATGTCGCGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAATAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 29668-30620 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWG010000002.1 Listeria booriae strain FSL L7-0816 NODE_2_length_519528_cov_43.405357, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 29668 30 100.0 36 .............................. TTGTAAGTAAAGAGAAGGTCTTTGCTACTGTCAATA 29734 30 100.0 36 .............................. GTCACAATTGAAGCTCCTTCTACTAATTTTGATTTA 29800 30 100.0 37 .............................. ATACTAAATATAGAAAAAATAATCCTGAACAAGATCG 29867 30 100.0 36 .............................. CCCTAATCCGTGCTCTTACAAGTCATCATGATGCGT 29933 30 100.0 37 .............................. ACTGTACAGATGACAGGGGAGTATGGAAATTCCTTCC 30000 30 96.7 34 A............................. CTGTAAGGCTGTAGTATTCTTTTTCTTTTTTCTG 30064 30 100.0 36 .............................. ATCGTTCAAATTACAGCAACGATAAAAGAGCTTGAG 30130 30 100.0 38 .............................. GACGATATGCTGACAACAATTGACATTAAAAACACTTC 30198 30 100.0 36 .............................. ATCGTAAACCAAGCCGTTGTAGATTATTTTGTTAAA 30264 30 100.0 34 .............................. CTTAGATCCCCGGCCACTTCCGCCTCTTCTTTCA 30328 30 100.0 36 .............................. CTTGAATTAGATTTGACGCAGGTGGCACAACAAGCC 30394 30 100.0 35 .............................. TTATGATGCTCGGGCACGCAGGTTACTGGATTGAT 30459 30 96.7 36 .............C................ TTTTCAAAAGTTGCTTGAGTGCCTAGCTTCGGATTA 30525 30 93.3 35 ........T........A............ CAAACAGATGTGGCATGGGCGGAGTTTGAAAGATG T [30541] 30591 30 76.7 0 .................A....TCCAG.C. | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 97.6 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : TGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGCTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTCGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGCAAAAGGAGATGGTTGATAAGTGGTGTTTGGAAAGGCGGGGATAAAAATCTGTCGACCGTCGGTAGTGTGGAATTTAGGGGGCATCGACAGATTTTTGTTAAGCATTGGTGTGCAAGGGATTGAGTCTATTTTTGAAGTTCGGACTGTAAGGTTAGAGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGTACCT # Right flank : TAGATTGCTCACAGAAGCAGTGTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCTCTAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCTCAGGATTTGGCGTCTCAGGTTGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGGA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 67513-68405 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWG010000012.1 Listeria booriae strain FSL L7-0816 NODE_12_length_116920_cov_41.377198, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 67513 30 100.0 36 .............................. ACAATATCCTGTAGAATATCCCAAATAAAATCTTTT 67579 30 100.0 38 .............................. GACAAACTGGAGGTAATGAAACATGATAGGAACGCTAG 67647 30 100.0 37 .............................. CCTTAAACGAGGCGATGCGTTTAGAAGGATTCGGGTC 67714 30 100.0 36 .............................. TGTGTAGCTTTGTGCGTCACTTAAATATATAGCGAG 67780 30 100.0 36 .............................. TTCCTCGTTGAATTCTGAGATATTTCAAGTTTTTTG 67846 30 100.0 36 .............................. AGGAGTGCGCCAGCAACACGAGTTTTCCGCTCAAGA 67912 30 100.0 36 .............................. TCCTGCACTGTGTAATAGATATGTTTTGCCATCATA 67978 30 100.0 36 .............................. AACATGGTCGTATACACAGCATTGAATCGCTTCAAC 68044 30 100.0 36 .............................. ACATTTTTTTGGTGGCGATGATTAGTTCACCCTTAA 68110 30 100.0 37 .............................. CCTTTTTCAATATTGTTTTCAAGAGTGTCGTACGTTA 68177 30 100.0 36 .............................. CAGGTTGGAAACAAGTCCCGCATGCTAGTGATCGCT 68243 30 96.7 37 .............T................ GATTGCAAGCATTTTTCGAAAGCAAAGGGCGCAGTTC 68310 30 96.7 36 .............T................ TTGGTTGGCACAAAATCAAGTGCTTGTCCGAAAAGG 68376 30 76.7 0 .............T...A..C..CA...TC | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 97.9 36 GTTTTTATCTAAGCAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGACGCGGATATCGTTCTAATCGCCGTCGGATTCGCAGGCACAACCAAATCAGTATTCGAAGACTTTCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTTTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAAAGGGGTAGGATGGTTTTCGAGGAGGCGAAAAAAATAAGTAAGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAGGAGTTAAGAGGGTACCT # Right flank : CCCCAAATAAGGAGAGACACCAAATGGCTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGATGACTACGGAAATATATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCTGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAATTCCACTCGACGTATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAATGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATTCGAAAAAACGCATTTTCTAGAACAATACTTTGATTCCGTTATCGAGATTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATACCGAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAATTACGAGAAC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGCAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 71653-72138 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWG010000012.1 Listeria booriae strain FSL L7-0816 NODE_12_length_116920_cov_41.377198, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 71653 30 100.0 36 .............................. TGTTTATTCACCACGCTTTCTTTCCATAAAAAATAC 71719 30 100.0 37 .............................. ATAGAAGATGCTGCTTGGACTTGTTGTTGCACATCTT 71786 30 100.0 35 .............................. AAACTTTCGCATTAAAACTGTGACTGACATATCAA 71851 30 100.0 36 .............................. TCGCGAAATCCACCGCGGCGAAAATATCGCACTGAC 71917 30 100.0 35 .............................. TTGTTTAGTAGTAATGGATATTAACTCTCTTGTTA 71982 30 100.0 36 .............................. CCTCTATTACCTGGTAACCAAACAGAAGGGTCTTGG 72048 30 83.3 32 .G.........G.T..............TG TCGCTGTATCCCCTGGTTTTTTAACGCGTCCA 72110 29 73.3 0 .............T..-.A.G...CC..CA | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 94.6 35 GTTTTTATCTAAGCAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACAAAAAACTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAACTTTGAAGTACTAGATAAAGAACGCCTCGTTCAGAAAACAACATTTGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGCAAACAATTCCTGCGAATAGCGCATTGATTGTGCAAGACGGGAAGAAAAAGATGATTTCTACAGATAATCTTGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCGAAATAATGGGGGCATCGACAGATTTTTGTTATGTGTTGGTACTAAAGGGGTTAAGCCTGTTTTCGAGGTTTGGGTTGTAAGGTTTGAGGGCAATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGTGTTGATGGGGTACTT # Right flank : AAATAAGGCATTAGTAAAACGAATTGAATAACAAGAGGGTGAATATCCATTACTAAACAATGGATATCCACCCTCTTATCTATGCCTCTATGTTGAAAATTTTTAGCATGCAATTAACAACAATTACCTACTCAAACTAACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTCGTGTTAAGGATGACCGTTTTCGCATAATATTTAATAGCTGGTGCAGTAACAGGGATTTTAACGCCCTCTACACCATTTACAGTAAGGCTAATTTTCGCTACGTCTCCAGAAAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGCGTGGTGATAGAACCGGTTGCTACTATTTGATTTGCAAGAGTGACAGTTTTTGTGTCCAGTACTCTACCATTGGCATCATATGCAGTTAATGTGATATTGTCCGTATTTTTTAAAATCACTCGTTTTGCATAATACTTAA # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGCAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //