Array 1 39934-39479 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMUL01000035.1 Escherichia coli strain KCJ4030 NODE_35_length_48440_cov_5.156418, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39933 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 39872 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 39811 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 39751 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 39690 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 39629 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 39568 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 39507 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1406-157 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMUL01000041.1 Escherichia coli strain KCJ4030 NODE_41_length_45549_cov_5.930848, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1405 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 1344 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 1283 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 1222 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 1161 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 1100 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 1039 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 978 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 917 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 856 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 795 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 734 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 673 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 612 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 551 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 490 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 429 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 368 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 307 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 246 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 185 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //