Array 1 980159-981651 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033257.2 Salmonella enterica subsp. enterica strain CFSA12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 980159 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 980220 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 980281 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 980342 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 980403 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 980464 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 980525 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 980586 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 980647 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 980708 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 980769 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 980830 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 980891 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 980952 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 981013 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 981074 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 981136 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 981197 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 981258 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 981319 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 981380 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 981441 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 981502 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 981563 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 981624 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 997783-999747 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033257.2 Salmonella enterica subsp. enterica strain CFSA12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 997783 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 997844 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 997905 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 997966 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 998027 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 998088 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 998149 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 998211 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 998272 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 998333 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 998394 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 998455 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 998516 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 998577 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 998638 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 998699 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 998760 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 998821 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 998882 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 998943 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 999004 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 999066 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 999169 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 999230 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 999291 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 999352 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 999413 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 999474 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 999535 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 999596 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 999657 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 999718 29 96.6 0 A............................ | A [999744] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //