Array 1 221647-217238 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMLR010000012.1 Methanobrevibacter smithii isolate MGYG-HGUT-02446, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 221646 37 100.0 34 ..................................... TTGTTTTGTGGCTTGTTTGTTGGCTTGTTGGTTT 221575 37 100.0 35 ..................................... AATAACATCTATAACACCCTCACTAATAAAATTTT 221503 37 100.0 34 ..................................... ATCTATTACTGCTTTTTTTAGCATAACAATCTTT 221432 37 100.0 35 ..................................... TATTCGGTGCTTGTTGGTTCATCATTTAAGTATTT 221360 37 100.0 37 ..................................... ATAAAGAAACCAAATTATCCAGAAAACCAAGCTTCAG 221286 37 100.0 35 ..................................... ATCAGGTAACGGATTACATCGTAACCAAATGATTA 221214 37 100.0 37 ..................................... CAGTAATCTGAATTGCGAGGTTTCCATGCTAAATCTT 221140 37 100.0 37 ..................................... TTTGAACTATACCAAGTGTCTATGAATCCCATTTTGA 221066 37 100.0 35 ..................................... CACCCATTAGTGTAGGGATCCATCTGTCCCACAAT 220994 37 100.0 35 ..................................... AATCCTTTTATCTTTCTTGTTTTTGCAGTAGGGAC 220922 37 100.0 37 ..................................... TGTTTTTACCGTTGAAATAACGATATGGGATATTCCT 220848 37 100.0 36 ..................................... TTTTAAACAGTTGGTACTATCTGCAATTAACAATTT 220775 37 100.0 36 ..................................... ACAATACTGTGGGCAGTACTTTTCACCCCCTTGAAT 220702 37 100.0 34 ..................................... TAATTATGGTATAAGTTCCATGTCTCAATGTTTT 220631 37 100.0 37 ..................................... GCCTTCTCAATGTTTCATTCAATTTCTCTTCTTCTTC 220557 37 100.0 35 ..................................... GTCATCACGATAAATGTATTTTACTGATATTTCTG 220485 37 100.0 37 ..................................... TGTTTCAAATAATGGTTGGTCTAAGGATACGTACTCT 220411 37 100.0 36 ..................................... TTTTTATGATTCGCCAGTATCTATTATTTTTTGTAT 220338 37 100.0 35 ..................................... GAAGGCAACCATCTATGCCTTAAATTGTTGCTCAT 220266 37 100.0 35 ..................................... CATACTCCACCCATATTTTTTTATACTTGAATTCA 220194 37 100.0 36 ..................................... TGCACACAGTACAGATGCAGTTTCCGCTATTTTAGC 220121 37 100.0 34 ..................................... CATGCTAAATCTTTCTGTGATTCGTATATGACTT 220050 37 100.0 35 ..................................... AATAAATTTCCTCTTTTTTATTGTTAGATATCATT 219978 37 100.0 35 ..................................... CTCCTTTTTATGATAAATAATGGTTGATCTAATGA 219906 37 100.0 35 ..................................... TTTTTATACCCATCAGTCGTTAACTCTTTCAAGGT 219834 37 100.0 36 ..................................... TTTTAAAAATCAATAGTATTTTCGCTCCTAATAATA 219761 37 100.0 38 ..................................... WTRAHCAACRKASTKAWWAKCGGAGTTRCTCAWKRTTT 219686 37 100.0 36 ..................................... CAGAACAAGCTTTATTATCCCAATAATCACTATAAG 219613 37 100.0 36 ..................................... TGTTCAAATACTAATATCTCAAACATTGTCTCACCT 219540 37 100.0 35 ..................................... TTTTAAGTTATGATTCAATGGGTAGGGCATATAAT 219468 37 100.0 37 ..................................... TATTTATAATGGCAGTATTTGCTTTAACTTGATAGTG 219394 37 100.0 37 ..................................... TYTTTYWYATMYRAYTWTTTGCTTTAACTTGATAGTG 219320 37 100.0 36 ..................................... TGTTTGAGATTATAATTTATAAACAGGAAACAAGCG 219247 37 100.0 35 ..................................... TTTTTATACCCATCAGTCGTTAACTCTTTCAAGGT 219175 37 100.0 36 ..................................... TTTTAAAAATCAATAGTATTTTCGCTCCTAATAATA 219102 37 100.0 38 ..................................... ATCATCAACTAAGTAATTTCCAGACCTCCTAAACCCAT 219027 37 100.0 36 ..................................... TTTAACACCACATTTGCCATCGAAGTCACTCCCTTT 218954 37 100.0 34 ..................................... AACCTCTGTAGGTTCACCATTATCCCCAATCCAT 218883 37 100.0 36 ..................................... ATTTTCTCTGTTTTTACCATTCTATCACCTATTTTA 218810 37 100.0 36 ..................................... AGCGTACGCCGTACGCTTGTATAAAACTATCCCTTA 218737 37 100.0 37 ..................................... TATTTTTTCTGACAACATACATATTTTTATATACGCC 218663 37 100.0 35 ..................................... GTAATTCCGTGACCTTTAAATTTTTTAAGGATCTT 218591 37 100.0 36 ..................................... AATGCTGTGATTATCGCTATAAATCCTTAGAAATAA 218518 37 100.0 37 ..................................... TGGGAAAACCTCCCAAAAAAGGCGTTTTTCATATTTT 218444 37 100.0 36 ..................................... CAGAACAAGCTTTATTATCCCAATAATCACTATAAG 218371 37 100.0 37 ..................................... TNGTTCAAATACTAATATCTCAAACATTGTCTCACCT 218297 37 100.0 36 ..................................... TGTTTGAGATTATAATTTATAAACAGGAAACAAGCA 218224 37 100.0 36 ..................................... GACATATACAAAAAGTTTTACTTTTATATTTTTCTG 218151 37 100.0 35 ..................................... ACCGTTTAAAAAGTCCTTAGTACTTAGTAAATCAT 218079 37 100.0 36 ..................................... AATCATCTTGTAAGTCTAAGGGTTCATAGATTCCGT 218006 37 100.0 37 ..................................... TATTATTACTATAATTTAACAATTCATTAATTAAACA 217932 37 100.0 37 ..................................... TTATTATTTATGTTTTGTTTAAAGACTATAATCTCGA 217858 37 100.0 38 ..................................... AGGCAGGAATGAATAATGAGTACTGGAAGAGTTTTATC 217783 37 100.0 35 ..................................... ACTTTTAAGTCAGATTCTTTTTTTAAATATGATGT 217711 37 100.0 35 ..................................... ATTGTATGGATGTCTAAAATAATAGGGTTTAACCT 217639 37 100.0 35 ..................................... TTTTTTTCATAAAATTTTAAAGCTGCTGGATCTAT 217567 37 97.3 35 ...........T......................... ATAATAGGATTGGCCTTTACCTTCCTATAGGTTAG 217495 37 97.3 34 ...........T......................... GACTCAAATTCTTTATTCACCATAAAAGACATCC 217424 37 97.3 38 ..........T.......................... TTATAGTATGTTGCATCGTCAGTAATACAAATAAATAA 217349 37 97.3 36 ..........T.......................... AATTCAGCTGTTTCTGTGTTTGTGGTGTGTATTTCG 217276 37 83.8 0 ............T.....C.....C....C..A...G | AA [217241] ========== ====== ====== ====== ===================================== ====================================== ================== 61 37 99.6 36 ATTGCAGAAAACCATCTATTAAAATAAGGATTGTGAC # Left flank : GATGAAGGTCAAATCAGGATTCAAGATAAAGCTCGTAAACTATTAATAGCTAAAATAATGAATAAACTAAACTCTAAAATTAACTTTAATGATAAAAAAATGAGTTATGAAGATATAATTCTTTATCAAGGCAGATTACTTGGTAAATATTTAACAGGAGAAGAGAAAAATTATGTTGGATTTTCAAGAAGATGGTGAAGATCAGCTAATTTTTCTTAAAATAATATTTTTTTATAAATAATTAATACTTTTTATTTTTCAGATAAATCAATATTTTAGCTAGTTTTCTTTAGATTACTTTTATCATGTGGTTTGGATGATGATGATCTTAGATTATATTAATTATTGCTTTAATTTTAGCTAGTTTTAATAGAAAAGTATTTAAATAATTTGTGCAATAATTTATATACAGAGGTTGGGTGAAGTAAAGTTCACAGAAACTGTCACTAAATACAAGTTTTTTGCATAAAAAAGTGAAATTTTAAGAAATTTTCGCGGCT # Right flank : TTTTTATCATGATTAATATTTCCAGTTGATTTTTATAAAGTAAATTCTAAAAAGATTATTAACAAATTGTTGCAGGGTTATATATGAATGTTGAAAGTTTGCAAATCATTTCTAAATTTATGAATGATTATGAATATGAAAAAGCTATGGAATTATGTGATGAGCTTTTAAAAAAAGATAATGAAAACAGCCATCTTTGGGCTTTAAAAGGATGCTGTTTAAATCATTTTGAAAAATATGTTGAAGCAATGGAGTGTTACAACAGATCCCTAAGCGAGGATGATGAAAACCCTTTTATCTGGTTTCATGTGGGTAAAATTTTAATGGAATATGATTTATTTGATGATGCTTTGGAGTGCTTTAACAATTCATTGGAAATTAATCCTGCTGATGATATGGCGCTGTATTCAAAAGGGGAGTGCTTAATGTTTAAAAAATCATATACTGAAGCAATTACCTGTTTTGATTTGGCTATTGGATTTAATCCCAAATATTTGAAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAGAAAACCATCTATTAAAATAAGGATTGTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 4945-908 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMLR010000016.1 Methanobrevibacter smithii isolate MGYG-HGUT-02446, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 4944 31 100.0 35 ............................... TCAATAGAATCAAAAACCGTAAAGGAGCTAACTGT 4878 31 100.0 34 ............................... CGGTGATTCCATATTGGTCAAGACTTGCACAGGC 4813 31 100.0 34 ............................... CAACAAGTTTTGCCACAGTTGGATCAGCAGTGGG 4748 31 100.0 34 ............................... ATGACAAATAATTCATTAGTATCCCTAAATGACC 4683 31 100.0 35 ............................... AAATCAGTCAAAAAAGTATCAAAAAACCAATGCCC 4617 31 100.0 35 ............................... ATAATAAAACTTTTTTATCATTGCAGCAATTAGTA 4551 31 100.0 37 ............................... GATACAGACAATAAAGAGTTAGTGGAAGATGTTGATT 4483 31 100.0 35 ............................... GGTAGTAAAACAGGGCGTGGTCGCACACAGAAAAA 4417 31 100.0 32 ............................... CCGTGAGGGTTTGTTTCCCATGCTTCTTTAAG 4354 31 100.0 37 ............................... TGCTTAAGGTTAAGCCTTAAAATGGCTTGTGATGAAG 4286 31 100.0 36 ............................... ATGGTAAATCGTTTTGGTCAATGATTTTACTGGATA 4219 31 100.0 35 ............................... ACAATTGCCTGATAAAATAAAAATGTATCTTTTAG 4153 31 100.0 37 ............................... TAAGTTTCTGATTCACTAAGAGTATTATATTCTTGTA 4085 31 100.0 38 ............................... ATTTACACTAAAAAAACTCTTTTAAACTCTTTAGAAGA 4016 31 100.0 38 ............................... TTTAGTTCAGTATTAAATGAATCATATGCATATCAAGG 3947 31 100.0 36 ............................... ATTGTAATAAGTGACAGTATGACCTGTAACGAATTC 3880 31 100.0 37 ............................... AGAGAGATAATTAATGCTTTCTTTGGATATTTCCAAA 3812 31 100.0 35 ............................... TTAGATATGATTATACAATGTGCCGATTATGTTGA 3746 31 96.8 36 ....................G.......... AACTATGTGGCAGAGCCTTATAATAATGGTAATAAG 3679 31 100.0 34 ............................... ATTTGAATTGAACCGGTTAGGTAAATTGTTGTTT 3614 31 100.0 36 ............................... AACACAAGTGTGTTCTGGCATGAATTATATAAGAAT 3547 31 100.0 35 ............................... AAATCCAGTGTTGCCTGCGTATAATCCATTTGCGA 3481 31 100.0 36 ............................... ATAGATACTGCTTTAAAAAACCTACCAACAGACACC 3414 31 100.0 36 ............................... CAAAAAAGAAACGAAGCAAGAATGGTTTATCGTATA 3347 31 100.0 35 ............................... AGGGGTGTGTTTATAGCTACATAAAAATTATAGTA 3281 31 100.0 37 ............................... TTTTATATCTGAATCAAGTGGGATTTTTTCTTTTATT 3213 31 100.0 36 ............................... TTGAGATCAATCTGAAAGGGCCTACTATGATGCAGG 3146 31 100.0 36 ............................... AATATTAAATCAATATATAAAAATCAAATAATTAAT 3079 31 100.0 37 ............................... TATATTTGTGTAACTGACCACTTATTCTAATGTTGTC 3011 31 100.0 34 ............................... GAACTTGTTACTTCTATACCTTCAGGTTCTGTTA 2946 31 100.0 36 ............................... CGACACTGTATCTGTTGAATGCCCCGGCAGGTTCAT 2879 31 96.8 36 .....................A......... GTTTGAGTTGAACCGGTTAGGTAAATTGTTGTTTAG 2812 31 100.0 37 ............................... ACTGTAGGTTTGTGCTTGTATGATGCTGTGTGTACAG 2744 31 100.0 36 ............................... AATATTAAATCAATATATAAAAATCAAATAATTAAT 2677 31 100.0 37 ............................... TATATTTGTGTAACTGACCACTTATTCTAATGTTGTC 2609 31 100.0 36 ............................... CACGGAATAAAAAGGAGATACAAAAATGAATAAGGA 2542 31 100.0 39 ............................... GAGTCTGGGATATATACAGTGTCACCATTATCATCAACA 2472 31 100.0 37 ............................... ATTATTAAACTTATATCCCCCTATTAAAGCAATGAAT 2404 31 100.0 35 ............................... TGTAAAATCATCAAACAAAATGGGCATTTAAAAGG 2338 31 100.0 38 ............................... GTTGTTAGTGTCGAGTTGTATGTTTTGTGCTGTTGATT 2269 31 100.0 36 ............................... TGAAATAGAAGAAGACAGTACAAGTCTTGATTTCGA 2202 31 100.0 36 ............................... TAATGCTAATTGTTATAGCAATTATAGCATTAATTG 2135 31 100.0 34 ............................... AACATTAAAAAACAAAGGATCAGATGCTTTCAAC 2070 31 100.0 39 ............................... CAGTCATTAACTGGTAGGAAGATACGATCATGTTTTCCA 2000 31 100.0 36 ............................... TCTGATAAGCTAATGACTGAATCTGAAAGAGTAGAG 1933 31 100.0 36 ............................... CAGTTAGTATATTAGAATAATAAACATACGAACACT 1866 31 100.0 35 ............................... TACAGTTTTATGGTTTGTGAAAATGGGGAAGCGCC 1800 31 100.0 37 ............................... CCACGAACATCACATCCATTATGGATTTGAAGTATAA 1732 31 100.0 34 ............................... AATGGAGGAGATTCACAAGAAGACTTAAAGAAGA 1667 31 100.0 35 ............................... TTAGCATAAGCATCAGTGTAACCTTTACTATAAGC 1601 31 100.0 34 ............................... AATAATTCAAAAGTAAGATACACATTATTGACTG 1536 31 100.0 34 ............................... AATAATTCAAAAGTAAGATACACATTATTGACTG 1471 31 100.0 36 ............................... AATACTCATCAACAGCACTAACATAAGACAACTTCA 1404 31 100.0 37 ............................... ACTATTGAACACATGATTTAATATTAAATTTTGGAGT 1336 31 100.0 37 ............................... AATTAATCCGTTTAGTAGAACTGAAAAGGATAGTATT 1268 31 100.0 35 ............................... TTAACACATAATACACTTTATAAGCATCTGTAATA 1202 31 100.0 35 ............................... CTTTCATGGAGGGAATGGGAGTATCAGCATCAACA 1136 31 100.0 32 ............................... CAAGGGATTACAGTCCATTCACAGTATTTGAC 1073 31 100.0 36 ............................... AAAGATAGCTATACGGACAGCTACTATGTGGTTATG 1006 31 100.0 37 ............................... TCATTACGAGCTACTCGCTACACTACCTGCATTCTCT 938 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================= ================== 61 31 99.9 36 GTTAGAAATAAGACTATAATAGGATTGAAAT # Left flank : AAGCTAGTGAAAGCGAGTTTAAGATAATTCATGATGGTTTAATGAAAATAATTGACACAGAGGTTGATTCAGTTATAATTTATAAATTAAGAATGGCTGATGTGATGAATCGTGAGGTTTTAGGTATTGAAAAAGCACCTATCGATGAAATTTTATAAATTTGATATTTTTAATTTTATTTAAACTGTTAAATTTGATAAAATAAATTTTAAAAGCTTTGTTTATCACATATTTTATTTTTTGATTATTTTTTAGCTATTTAAAAAATTTTATTTTTTTATTATTTTTTTAAGTTTTATTTATTTAAATAGGATAATTCTCTTTTAAATAGGTTATTATTTTATTTTATAAATTTTTAAGTTTTATTTTTTATTTTAAGTTATTTAGATTTGTTTGTTGATACATATAAATAAAAAACATTTTTTGTTATCGACAAATTTAAGTGTATGAATAAATAAATTATAAATTGTTTTAGCCCTTTTTGAGAAAAAATGTGGCCT # Right flank : TCATTTTGCACCTATTGATATATAAATTTAATGATGGTTAGAAATAAGGCACTGTCAATAACTTTGGTGATGAATGCCTCGGAAGTTTCTCTGCACCCAGTATTTGGTTTTGAGATAAAATCTTGTCCTAGCTCCTTCAAAAGTTCTTAATGTTTTTTTAATATGCTTAGGGAAAACTTTTTGAAAGAAATTTTCAATTTTATTACTTGTAGTTGGAACATTACTATTTTCAAGATGAAATGTTATTGTTTTAAAGTAAGGAATGATAAAAAACCACAATAAATTAAAAATAACTTTCGGCAAATTGTTTTGTATACTAATAAGATAATCTCTACCTTTTTTAGCAGATTCTAAATCATTAGCATCCAAAACATCAAAAACTAATTGTTTACAATAATTTAAGTATTCCAATTCTTCATTAGAATAATTATTTCTTTTCTTATCCTCCCTAATGTTCCTGTTTATCWWWRYTRWWYWYRMAAWRYTWRASAATWYWTTAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGAAATAAGACTATAATAGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA //