Array 1 44236-45422 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCJG01000005.1 Lactobacillus crispatus strain C25 C25-b_Contig_005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44236 29 100.0 32 ............................. ACACATACGCTTATAAGATGGGACGGTTCTAA 44297 29 96.6 32 ............................C GATTCAGAACGTTGCAATAATCGTGCAGGTGC 44358 29 100.0 32 ............................. GCTTGCATATTGTGGAAAACTTCAAAGCGTGA 44419 29 100.0 32 ............................. TCCATTTGCTCACTACTTCGACCAATTGCAAA 44480 29 100.0 32 ............................. AGGCTCGGCTATTTCTAAAGGTGCCAAATCAA 44541 29 100.0 32 ............................. AATCTATGTATTTCGTAAGTGTGATGAAAACA 44602 29 100.0 32 ............................. AGCTTTTGTGTTTATTGTCGTTGGAGCAGCTG 44663 29 96.6 32 ............................C TTTCAGCAATTAAGCGGATTTATCCGCAGGAT 44724 29 100.0 32 ............................. TCGTTGAGCTTGAGAGTTGGCATCGTTTTCCG 44785 29 100.0 32 ............................. GTTCCCATTACTTTCTCCTTTAAAAATTGCTA 44846 29 96.6 32 ............................C AACTTCTCTAAAATTGCTTGACAACTTACAGC 44907 29 100.0 32 ............................. AGCTCGGAAAAACGACAAGCTTAAAGGCAAAG 44968 29 100.0 32 ............................. AAAAATATTTTTCTGCTGTGCTGTTTCACATG 45029 29 96.6 32 ............................C TTGTCAATTGGCGTAGTTGCTTCATCGTAACG 45090 29 100.0 32 ............................. ATTATTGGTCAACAGTATACCAGTAATGGACA 45151 29 100.0 32 ............................. GTTGTTTACGATTTCCAACAGTTCATTAATCA 45212 29 100.0 32 ............................. TATTGACGTTGACGAAAAGACAGAAAAGAAAT 45273 29 100.0 32 ............................. AATGAGGCAAAAGCTAAAAAGCATTTTTCCTT 45334 29 96.6 32 ............................C ATAAAAAACGATGTCGGGAACTGCAAAGAAGA 45395 28 86.2 0 ..............C.......-C...T. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GCACTATTGAGTGATAAGAAGTTTGATCAAGCTGTTTTTTATCTGATGGATAATTTGAATTTATTAAAACAATCATTAAGCGCTGATATGGATTATAGTCAATTATTTGAAAAAATGCGAAAGTTAAATAAAAAAATTAAAGGTATTTCTAAGCCTTTTCATTATATGCCTAAAAAAACACGTACTATCAATCAGGGAAGGAGAGCAATTAATGCCATAATTAGCAATATTATTGGTGCTGATTGTAAAAAAAATTACAAAATTTGCAAGATGAACAAATCTTTCAGATGTATCTTGAAGCTAAGCTACTAAATCAAAATTGGATGAAGCTTAACGATGATCGGGGAGTTAGTCAACGAAGCAGAAAAAGAGAATCTTATTTTATTCAATTAACTTTGAATATCTAATTACATAAATTTTGAAAAGTGAGTCTTCTTAAAAGTGATTGAAAATGTTATGATTTGAATTAAGGATCATTGATATAGCGGGATTTGTTTAGT # Right flank : TACTCTTGTATCAAGGGATTTCTCTAAAAATAAAAAAATAGATAATCGATTAACTTAATCATTCTAAAAATCGTGCTTGATCTAACTTCCAAACATCGTTATACTAAAGAAAGTGTTGCATCGAGAATCCTTATTCACGATGCCCGATCAACAGAAATTTTAGCAAACCTCTTAAAGGCGACTCGCTTTTAGGAGGTTTTGTTTTTTTATTGCCAAACAAAAAAGATGACAAAAATGCTGTAATCATTCACAATAGGGAACAACAAATTGTTGAATTAGAGGATTTAATTATGAAAACAGTAAAGAATATTATTATCGGCTTTGGTAAAGGCGGCAAAACGCTAGCTAAATTTTTAGCGAAAAAGGGCGAAGAAGTCCTAGTCATTGAAAAATCTAATCAAATGTATGGTGGTACTTGCATTAATATTGCTTGTCTGCCATCTAAACGCTTAATTATCGAAGCGGGTAATGGCGTGGATTTCGTAGATGCAGTTAATGGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16832-17165 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCJG01000018.1 Lactobacillus crispatus strain C25 C25-b_Contig_018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16832 28 100.0 33 ............................ CTCAGCACCGTGAGTGATTCCGCCATTTCCGTA 16893 28 100.0 33 ............................ CTAAAACTGCAGCCAGAAAATGGGAACGTGACG 16954 28 100.0 33 ............................ TGCAAGTGACCTAAACAATAAGGCTGATAAATC 17015 28 100.0 33 ............................ TTACCGGCTGCATCTACTACTTTTTCACCTTTC 17076 28 96.4 33 ..................A......... TAGAAGACAAGCGAATGTGGAAGTAGGCAACAA 17137 28 85.7 0 .......................A.ATA | C [17159] ========== ====== ====== ====== ============================ ================================= ================== 6 28 97.0 33 GTATTCTCCACACATGTGGAGGTGATCC # Left flank : CAAGACATAAATTACCAACGATCAATACTCTTAGATACATTAAATATTTGGACCGTATTGATTTTACTTTATTTGATTTAAAAAATTATTTTGAAGGTAATAAAAACACGCCGCTTGCTAGAGCTTATAAAAATGAAGTGACTAATCTATGGTTATCTCAATTTTATGATTTTCCATCCTTTGTAAAAAAGATGCAATTAGGACGTTTTGTTGATAAAAAATATAACGTTTTGAACATTGCTAGTCGGCAAAATGAAATCATTAAAAAATTTCCTGCAAAATCAGAATTATCTAATTCTATGCCTATATATGCTGACTCCCTGATTTCTTTAGTAAAAGACAATATAATTTAATGAATGACCAGGCTGAAATAATTTGCAAGCACTTTGTGTAGGTTCTTTTTTATATCGATAGATATTAAAGAAACACTTTGTGTTAAAAGCAATAAAAAATGCTATGATTTTAGGTAGGGATTGTTGCTGTAGCGGGATTCATTTAGT # Right flank : AGCTGCTCTGAAAAATATTTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCCTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAAGAAAAAACCACAAATCAAAGTTCACTTCAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACACATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 19893-20348 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCJG01000018.1 Lactobacillus crispatus strain C25 C25-b_Contig_018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19893 29 96.6 32 ............................C TAACAATGCTCAAACGTTAAATTTGGTTGATA 19954 29 96.6 32 ............................C AAAGTTCGTAGTAAATATGAACCTAACTACGT 20015 29 100.0 32 ............................. TTAACTCATTCTGTGAGTAATAATATAGGCGA 20076 29 100.0 32 ............................. AGCTTGCTTTGTAGCTTGTAACGTTTTTTCGC 20137 29 100.0 32 ............................. GCACTTGGTCCTTGCGCCTTTAAATTGCGACT 20198 29 96.6 31 ............................C ACAAAATCCAGGTACTACTTTAATCCATGGA 20258 29 89.7 32 ...........AC.....A.......... AACTGATTTAGTGGGTGCAGTTATGGATTGAG 20319 29 75.9 0 ...........AC.....A.TC..T.A.. | T [20335] ========== ====== ====== ====== ============================= ================================ ================== 8 29 94.4 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGATCTGATTTTTGTCTCCTCTCTTAATTCACGTACACTATTGTAGCTCAGCAGTTTTACGATAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATGAGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : TGTCCTGGAACGTACAGAAAAATAGCTGATAAACCGCGTCACGACGGCATTTGTTAGTGATTGAAAGTGTACTTTTTTCTTTCTGAACGATTGGAATTAGTACACTTTTTCTATTTAAAGCTGGCGGGTCGAGTGTTCTATGTCCTATTTCGATAGTCGAGTAGGCGAATGTCCAGTTTGACAGGTTCGATACTGGTCATGGAAGACGCTTTGACATTTGATGGCATTATTCACCAGTTGTTGGTCAATCCGGATACCACGATCATTAATGTTTTGATCCATCCAGTAGTTTTCCCATTCATTCTGCGGGACAGGAAAGCGTTCGAGCTTCTGAGTGATTTCCATTTTAACTTCGACGTCACGCTGATTGTATTGCTTGAATTGTTGACATTTATTGGGAGCATGGTAGGGGAAGTTACGAGTGCGATTTTGATTAGACTTCGTGGGTTTGCAAGGTGTGCAAAAGTAGCGAACAAGTTCCTTACCAGCAGTAATCTTTT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 65934-66329 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCJG01000018.1 Lactobacillus crispatus strain C25 C25-b_Contig_018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 65934 29 100.0 32 ............................. GGAAGCTTGGTGTTGACTATATTCCCAATAGT 65995 29 100.0 32 ............................. GCTTCGTGATGGTGTAGCAATTGACAAAAACT 66056 29 100.0 32 ............................. CTTCAATTACTTTCTTAGCTTCAGCAATTGTA 66117 29 96.6 32 ............................C ACAAGAGCAATTGGCGGAAGCCGTAGGGCTTG 66178 29 100.0 32 ............................. AAAAAAAGAAAATTTAATACAGTATGAAAAAA 66239 29 100.0 32 ............................. ATGCAGAGTGGCGTGCATGTCATGATTACAGG 66300 29 82.8 0 ..G..........A...........AA.A | C [66322] ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.1 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTTTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGAATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : AGCAGTCTTTTTGTACTATAGACTATTTATGATACTATGATATCTTCATCAGAATATCTATAAAAAATGAATTTTAAATACTAAAGGAGTCATGATATGGCACGTGAACTAAAAGAAGTTCAGGGTATTATCTTTAAAAGGCAGAAATATAAAGAAGCAGATTTATTAGCCAAAATTATGACTAAACAAGATGGAATTATGACTCTGATTGTTAAAGGAGCCCTGAGGCCTAAATCAAGATTAAGTGCAGCAACATTAAATTTTTCTATTGGTACTTACGTAATTTATACGAGCGGAAAGGGCTTAAGTAATTTACGCACATATAAAGAGGCAAGGCAGTTTGATGGCTTATATAATGATTTAACCAAGAACGCTTATATTTCTTTTATTTTTGATTTAATTGATCACGCCTTTGTAGAATATCAGCCAATTGGTAAATATTATGATTTAGCTTTATTTGCTTTGAAAAAAATAGATAGTGGCGTTGATGCAGAAATGAT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //