Array 1 95132-95429 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAWI010000051.1 Aggregatibacter actinomycetemcomitans strain SL7467 665, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 95132 33 97.0 32 ................................C TTAATAACAGGTGCCGATAACGACACTGTTAT 95197 33 100.0 34 ................................. CTTACAATTAGCCGTACTTTTGTAGGTATCGATG 95264 33 97.0 34 ................................T CCATTAATAAGATTTAGCAGTTGTCTTTCTTCAG 95331 33 100.0 33 ................................. ATCTAAAATCCCCAAAACGCCCGTGAATTTTTA 95397 33 87.9 0 ....................A....C.....TT | ========== ====== ====== ====== ================================= ================================== ================== 5 33 96.4 34 GCGGCCATCTTCGGGTGACTGTGTGTTGAAACA # Left flank : ATGATTTTGAACAGACTGTATTGCCCATTGGTGCAGGGCTACTGTTAGTCGTAAAAAATAACCGTTAACTGTAGATTGGGTTGCGACGTTCTGTTTAATTCAACTTACAAATGCTTTTAGTCACTCCGAAAACCGATTGGTTAAAAACAAAAAGTGCGGTCAAAATCCAAGTCGTTTTTAAAATATACGGAAACTGCAATATATTCCCTGCATTATTCCATCAGGCACATTTTTATTTGGGGAATTTTGTTGGTGCTATCTTTTTTAATAGTATTAACGGCGTACCTTCAGCGATGTGCTTGTTATTCAGTTCGCTAGCCCATGCTTCTCATCAAATTCCTGCAAGCTAGCGATCCTTATTTTCTTTAACAATTTGCAATAGTTAATTCATTTGTATAACGATGACATGCTCGTTATACTTATTCCACTCTCTATTTTGAAATAAGTTAGCGAAAGACAGTAAGTAATCTACTGATTTTTCTTGTTTTTTCATATAGGTA # Right flank : TACTTGGTATACGCTTTTTATGAGCATTTAATCGGTTAAAAATATATGAGCTTGCTGCCTAATGGTAGGGCGGCGTTTAACAAAATGCTCTGTGCGAGTTTGATACTCGCCAAGCTCACTATTTATTGCCCTGCACAATTTTATACAATCCTTTCTTAATTTTATTCAACATACCGGTAATCCCAAAAAAACACCTCCAAAATCGACCGCACTTTTTCCCCATAAAATAAAAAAGCTGAATCTCTCTAGATCCAGCTTTTCTTTTATCTATTTATTTTATTACGCTAATTCAGCACGTAATTTTTTCGTGACGTCAACCATGACTTTCAGTTGTTCTAAGGTTTCTTTCCAGCCGCGGGTTTTTAAACCGCAGTCCGGGTTGACCCATAGGCGTTCTTTCGGTACCACTTGGAGCGCTTTGCGGAGCAAGTGTTCGATTTCGGCAGCGGTTGGGACGCGTGGGCTGTGGATGTCGTACACGCCCGGGCCTATGTCGTTCG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGGCCATCTTCGGGTGACTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 19188-18689 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAWI010000044.1 Aggregatibacter actinomycetemcomitans strain SL7467 658, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 19187 33 100.0 34 ................................. AAACAACCGAATCAAAAAGCCATTTAAGCAATCC 19120 33 100.0 33 ................................. TCATGGTAAGTCACAAGATAACTTTTTTCATGA 19054 33 97.0 33 ................................C AACGCCCGCCCAAGGTTGCGCGCCTCGCTTGAT 18988 33 97.0 34 ................................T TTAATATTTTTAGCTTTATCAGCATAAGCAGTCG 18921 33 97.0 35 ................................T TCTAAAAATTTATATAAGCAGGCAACGTGTTCAAA 18853 33 100.0 33 ................................. TGCGCTTGGTTAATACCGCCTTGCATTTTGGTA 18787 33 97.0 33 ................................T GGTGATGAATTACGCACTAAAATTGGTTTGGAA 18721 33 93.9 0 .......................C........G | ========== ====== ====== ====== ================================= =================================== ================== 8 33 97.7 34 GCAGCCACCTTCAGGTGGCTGTGTGTTGAAACA # Left flank : TTGATGAGGTGAAAAATGTTAATGTTGATTACCTATGATATTTCTTTAGGAGACTCGGAGGGGCAAGCCAGGTTGCGCCGTATTGCGAAGCATTGCTTGGATTATGGCGTACGGGCGCAGTATTCGGTGTTTGAATGTGATGTAACGCCGGATCAATGGGTAAAATTGAAGGCTAAGCTACTAGCGACTTATGATCCGGATTGTGATAGTTTGCGCTTTTACCATCTAGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGGGCGAAGCCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACCCCTGGTTCTCATCAAATTCCTGCTGAGCTAGCGATCCTTGTTTTCTTTAACAATTTGGAATAGTTAATTCATTTGTATAACGACGATATGCCCGTTATACTTATTCCACTCTCTATTTTGAAATAAGTTAGCGAAATGCAGTAAGTAATCTACTGATTTTTCTTATTTTTTCATATAGGGA # Right flank : GGGACTCTGTTACATCTGAACTCTGATACCAACTAAACTAAGCGCCTTATAAAAATAAGGTGCTTTTCTTTTCCCGCATACCAACACAAAACTCCTTGCCCTTCCTCCACAAAATATATAGACTGAGTTCCGTTATTAGTCGGGGTGCTTTATGCTGAGATGATACCCGTGAACCTGATACAGTTAATACTGGCGTAGGAAACTAACAGAGAATCATATTTCCTTTCTTTTTCTCTTCTTCTCTTCATCGTCATTATTGCTGATTATCTTTTTTCATTGAAAAGGAAAAATTATGCAATATGGTTTTTGTCGCCCTGTGCCGGTAAATGGCGGAGGGCATTATGAGTAAGGTTGCGAGCGTTGACTATCTCCGGTTAGGGCAGCGGCGGCGGTGCTGGGATTGAGGCGGATTTGACGATGTTCCAAATGCATGTCGTTTGGTTCATCGGTGACCGTGCAAAATACCTTGAACGTGGTTGATATTTATGCCGTGTCACGCC # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCAGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //