Array 1 85372-86821 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFB01000015.1 Photorhabdus laumondii subsp. laumondii strain IL9 IL9_35_scf0015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 85372 28 100.0 32 ............................ TACTGTTTCGATATGTAATCCAGCGTAGTCAG 85432 28 100.0 32 ............................ GGATGGTTCAACGGGGCGTTATGCCTGGGTTT 85492 28 100.0 32 ............................ AAAACCGGCGCTGCGGCCATATTTGTTGTCAT 85552 28 100.0 32 ............................ AAGAATTGGAGTTTGCACTCTGCCAACTGAAA 85612 28 100.0 32 ............................ TGATCCGGATACGCCGGAACTGGAACCACTAC 85672 28 100.0 32 ............................ TCTAATCGTTCTCAAAATACATATCCATAGTG 85732 28 100.0 32 ............................ TGCATCTGGCCAAATGGATTGCCCGCAAACAC 85792 28 100.0 32 ............................ AAAAGGTGACTGGATAAGTTTTGAGCCTACCG 85852 28 100.0 32 ............................ TCCGGCATAGTTACCTATTACAGTAAAAATCA 85912 28 100.0 32 ............................ CTTGCCTTTCGCGCTCTTGGATCTCCAAGCAA 85972 28 100.0 32 ............................ CTCTGGATGTGACCTTTATCAACGAAGAAGAT 86032 28 100.0 32 ............................ GAAGAGATACGTTATGTAGCATCGGAATTAGA 86092 28 100.0 32 ............................ TTAACCCAGCGTCTCTTCCAAGTCACTTGCTG 86152 28 100.0 32 ............................ ACAATAGTAAAAGGAGAATAATATGAGTGATA 86212 28 100.0 32 ............................ CTAGCATCACGTAAGGATAAAGAATCAGGAGA 86272 28 100.0 14 ............................ CATACCAGAACTAG Deletion [86314] 86314 28 100.0 32 ............................ ATGTGGGTAGTATATCCGCGGAAGCGTTATTT 86374 28 100.0 32 ............................ TCACGTCGGTATCTCACTGGGGACCTCCCGTC 86434 28 100.0 32 ............................ TTTCAGGATTTTACCCATCAGGCGGGGATTCA 86494 28 100.0 32 ............................ CTCAAGAAGTTTACCGGTTTCTTACCGTCTGC 86554 28 100.0 32 ............................ ATAACAAAATGCCGCATTCGATGCCATTTAGC 86614 28 100.0 32 ............................ TTTCATTTCATTGCTGATAGTGCCGCCCTTGG 86674 28 100.0 32 ............................ AGACAGATTAGAAGTGTATGTGACAGAAGGAA 86734 28 100.0 32 ............................ TGAGTAAGCTTCAATGAGTTGACTTATTTGAC 86794 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 25 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGATGATGTACGAAGCTTTACAACCAGCTATCCGTTATATGCAACGCCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCAGATAATCATCGTAGTGGGAAGTTGTTGGAACGATTGGGTTTTGAACGTGAAGGCTATGCTAAGAAATACCTGATGATTAATGGAGTTTGGCAAGATCACGTATTAACCGCGTTGACAGATGAAAAATGGAGTGGAAAAAGTTGATTATTACGCTGTACTGTCACCAAATAAAGTAAAGCAAATTGGTAATGATGAATTAAATCACTGTTGAAAGTCAGCCTTCTCCACCCCTTATTTTTGACCCTTTTTTGAGGGTGGATTTTAATCTATTGATTTTTAATGGAATATTATTTCTCTTGTAAAAAAGGGTTTTTTCATTGTTTTATCAATATATGCTTTAATTGTCAGTAGGTTGAAGTTAATATGTAACA # Right flank : ATGAGTAAGCTTCAATGAATTGATTTATTTGACGCACTGACTTCGGTTGGTGCGTTTTTCGAAGTGGCTATTTGGGCTTTCTGTAGTAAGGCTAGTTGCAAGGTACCATCATTTAGGCCAAATACAATGTTACATTGGCAAATTATAAAAGTTAATGATTTCTAGTGTATGAGAATGAATTTATGCATACTCGCCGATTTTGTTAACAAAGTGAATGATTAACCATGGTAGATTCATATAATAAGTGCAATATCGTTCCTCTTAAAATCAACATGTCCGTATTACTTTAAATTATTAAATGGACATTTTGTTATTGATTATCATGAAAATAATTTGAATGGTTTCTTTAATTCGTATAAATAGGTATTATTCTGATTAGTATATTTAATAAATATTGAAGTTCTTTTTTATAATGATTTGATAAATCATAACTTTTATTTCATATTCACTGGATAATGTTGGTTTAATTAAAAACAGATAAATAAAGAGTGATTGAAAAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3374-3642 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFB01000058.1 Photorhabdus laumondii subsp. laumondii strain IL9 IL9_35_scf0058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3374 28 100.0 32 ............................ ATACAACTAACATAGCGAGATAATCATGACAG 3434 28 100.0 33 ............................ ACGCATCAACTGGCCGAAAAAGTCAGTTCCCAG 3495 28 100.0 32 ............................ ATAGTGTAGATGGGCCATGCCTGCGTCCATGT 3555 28 100.0 32 ............................ ACCTTTTAGTTATGAGGGTGTGCGTTTTTATT 3615 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 99.3 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TATTGATAGCGGCCGTGGAATTTTAACTCATCAAGGGGATGCCATTAGAAATATTGTAGGTTCATTTCCTGGGGCAATAGCACTTCATTTTGAGCTGGCAGCAAAAGGGGTTTTTTACGGTAACGCAACTTTTGGCGTGGCTACAGATGGTAATCCTAAATCAGTAGATCATTTTACCCGGGATGCTGTATACACTACATACGGTTTTGGGTTCGACACGTCAAGGGTTGTTCCTGTAGCTTCGGAGAACCGTCCTCGCAACATCGCCTTTAATTACATAGTAAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCCGGAAATAGAAAGAGAGACGGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGTAAATTTTAATCTGTTGATTTTTCGGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATAATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACA # Right flank : AACCAACATTTTCACTTACCAATCTATTTTCAGAACTGTCGGCTCAAGTGTATCGTTGAGAACAATGAATGTGTGTTTTATGAAGATAGAGAGCCTATGACATTCCAGAACACCGTCGCTTAGATATTCGTGTCCAAATGCCAGAAGATTCATCTTGGAATTTAAAATAGCAGGCGTTACAGGAAGAGATAGAAGGAATAAGAGCAGAATAGTTTTCAGATGTTAAATATAAATGGTTTGGGTATGTTTTCGATTCTAAAATATTTAATTACTTATTACTGCTAATTATATAAAAATAGTCAATCTCCTAATAAATAGGAATGCTGTATTACTCTTCTTTCTGAACTAGACTTTGATTTTAATGAATTACAGACGGATTATTTTTACAGTAATTAAATATGTTGATTATAAAAAATATTATTTTGCTTAAGGAGTAAGGATATGAGTCAAAAAAATGATTTTAAAGCTTTTTCTATTAGCGATAATGCTAATGTAATTAG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 6575-7262 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFB01000058.1 Photorhabdus laumondii subsp. laumondii strain IL9 IL9_35_scf0058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6575 28 100.0 32 ............................ ACAGCCGGAAAATTAATGGCAAAGCATTAAGT 6635 28 100.0 32 ............................ CGTAATTTCCTGCTTATCATTACTCTTTAAAG 6695 28 100.0 32 ............................ TACGTTTGCACTCTTCTATATAGTGAGGGTTA 6755 28 100.0 32 ............................ CGTAATTTCCTGCTTATCATTACTCTTTAAAG 6815 28 100.0 32 ............................ TACGTTTGCACTCTTCTATATAGTGAGGGTTA 6875 28 100.0 32 ............................ TGATGCCGACGAACGGCAACAATGCCGGTGAT 6935 28 100.0 32 ............................ TTTGAAAACTCCCTGAAGCAATGGCGTGACCG 6995 28 100.0 32 ............................ AACTTCTCCCGCACACAAAGGGAGAGTGGGCG 7055 28 100.0 32 ............................ TAGAAATCCTTGAATATAGTCAGACCCGTAAT 7115 28 96.4 32 .C.......................... AACTTCTCCCGCACACAAAGGGAGAGTGGGCG 7175 28 100.0 32 ............................ TAGAAATCCTTGAATATAGTCAGACCCGTAAT 7235 28 92.9 0 .C..................A....... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.1 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGACGAGGTATTGATAGTGGCCGTAGAATTTTAACGCATCAGGGGGATGCTATCCGAAATATTCAGGGTTCGTTCGCCGGCATGATAGCACTAAATTATCATTTGGCAACAAGAGGGGCTTTTTATGCTAGTCAAGTTCTTGGAATAGCGACAGATGGCAGTTTCAAATCGATAAATATTTCTGACACAGATACTCCATACGGCTTTGGGTTCGAGGCGTCAAGGGTTGTTCCTGTAGCCTCAGAGAACCGCCCTCGCAACATAGCATTTAATTACATAGTGAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCTAGAAATAGAAGAAGAGACTGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGCAAATTTTAATTTATTGATTTTTAAGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATCATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACAA # Right flank : AAGAGGATTAATTGAGCGCTTTTAGTGAATATTTATTCATTGCACCACAGCGATGTTAGGAAAGCATGTTAGGAAGGGGAGGGGCCGGCATAAAAAAAGCCACCTTGCGGTGGCCTTTTCTTTTTTCTAACTCACTGTTTTATCAGCGAATTTCATTTGGTGCCCAGGGCGGGACTTGAACCCGCACAGCCTTACAGCCGAGGGATTTTAAAAACCATCACAGCATTTTAAGAAACAATAAGTTAAGTTAAATCAGTTGGTTATATTTTATATATGTGCATTGATGTAGAGCTATATATGATGTTGTCGCCACTTGAAATTAGTCATCTTCAATCTGATCGTAAGGGTTGAGAGTTAGCGCCAAATCAAGATGCTCTGGAGCAAAGTGCGCATAGCGCATTGTCATATTTATAGTGCTGTGACCTAATATTTGTTGTAGTACTAAAATATTGCCGCCGCGGGTCATAAAATGTGATGCAAATGTATGACGGAGCACATGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 223941-225288 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFB01000001.1 Photorhabdus laumondii subsp. laumondii strain IL9 IL9_35_scf0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 223941 28 100.0 32 ............................ ACAAGTAACTATTTTCGTTACCGTAACCTTCT 224001 28 100.0 32 ............................ ATCAAGTAGTGCTTACAAAGGAGAAGAATGTA 224061 28 100.0 32 ............................ CGCATACCAAGCATCGAATCCCCGTTTAGATA 224121 28 100.0 32 ............................ TAAACGATAACCCCATGCTTCTAATGATTGAG 224181 28 100.0 32 ............................ TTTCCGCTGTACGTTGTACTGCACTATTTAAT 224241 28 100.0 32 ............................ ATCAAAGCACAGCAACGAACAGGCAAGGAAAG 224301 28 92.9 32 CC.......................... TGATACGTCCACAGGTAGCTATTTTCGTTACC 224361 28 100.0 32 ............................ AAGGGAGTGGACCAAAGGGTAAACCTCAGTTA 224421 28 100.0 32 ............................ AATCAAACTCCAGTCAGTATCGCTATCCGTAC 224481 28 100.0 32 ............................ GTAAACAAACGAAGTATCGGTCTGCCGCTCTT 224541 28 100.0 32 ............................ AGACGTGCTCCTTGGGTCCTCTCATTAAGTGT 224601 28 100.0 32 ............................ TGCATCCATCAACATTAAGCCCGTTGACGATT 224661 28 100.0 32 ............................ TTACATAGGCGGCGAGTTCTGCACTGATAGAA 224721 28 100.0 32 ............................ GAGATGAATGACATTGCGCTTCAATGGCAAAC 224781 28 100.0 32 ............................ TAACACATCAGCAAGCTGTTGCTGTGGCAAGT 224841 28 100.0 32 ............................ ACACGTCAGTTCGATAATAAAATCCAGGTCAT 224901 28 100.0 32 ............................ AAAATGAGAGTAAGACGATTAGATAGCGATCA 224961 28 100.0 32 ............................ AATGAAATTAATCGTTTCTCTTACAATATTTC 225021 28 100.0 32 ............................ TACTATGTTGGGATATGCTGCATTATCTAGAA 225081 28 100.0 32 ............................ TCTTGGCCCACATGCGCCACAACGTGGGATGG 225141 28 100.0 32 ............................ AGTATGCACCTTGCGGAAAGCGACAAAGTGGT 225201 28 100.0 32 ............................ AAATCCCCGGTCGCTATCAGTAATTGCATCAG 225261 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAGGAAGCAGGTCTGGATGTTGTGATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATATTTTTCAGCTTGTAGTTATTTGGTTTCTAATTAGTGGATGAAGGGACCCTGGCACCAATATCTAATGTAAACTTAAGGCGTTGGATGAGAAGCGGTGTCCGGGTTCCAAGTGTTCAAAATAATGTTTGAGTTGGATATTGAGTTTACTTTTCTAGACATCTTATAAAATCTATTTTTACAGTTATTACAATATCTTAAGGAAAATTTAGTTGCTCTTATTGCTGCTAAATTTTGCCAGAATCTACACTTTTATTGCTATAAGATATGGTGCTTTTGTTGTGCCCTAGTTTTGACCCTTTTTTATCATCAAAAAACAACCTATTAATTTAAAAGAAAAATAAAACATCTCCTGAAAAAAGGGTTTTTTAATTTTTTATCACTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : GCGCGATAACTGCCTTAGGTTGTTAGGTATAATATTGGAGGTTAATTGCGCAGTCTTGGGGCCAGTAGTTGATGGCGGATGGATTCTGCTAGCTCATCGAGAGAAGGTTGCTCTGGATGTTCATCGGATGTTTCATAGGCTAATTGTGCTTCGGCCAGATAAGTATGTACAGGTTGACCATTGTCATCTTCCATCACAACGTGATACCAGGGGGCGGAACGCAGGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGCGAGTATTCCACATCAATATCCACGATGACTCCCAAATAACCCAGAAGTTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGTCTTGTATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCTGTACCCGGTAGTTGAAGCCATTTTTTGTTTTAAATTGCAAATGTGGCTTCATCTATTTTCAGGTTAGCTGTAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 229157-229304 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFB01000001.1 Photorhabdus laumondii subsp. laumondii strain IL9 IL9_35_scf0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 229157 28 100.0 32 ............................ AACAACAAAACCAACATGTCCTCCACCAATAT 229217 28 100.0 32 ............................ AAGCATCCCGATCACTTCGGTAATATGAATGA 229277 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAATCATTTTTTATCTGTAATGTTTATATTTGCTCTCATAATAACATGTAATATAGATTATATCTTTAATTAAGCTAATTATATTTCTGAAAATATGAATTGGATACTTGTTAAATTGGGTAATACTGAATTTTTCAATATTTAAGTACATGGTGAAATTAATGAAACTGTTGGAATATTGGATGATGTCACTATTGAAAGGGGCTGTGAGATTAAGAGGTACTGATTTTTGTCGATGACCGAATTCAGTGAATGGTTCCAGTATCATTGAACATTTTACAGGCAACAATTCTCACTTACTGCATAGATCTTAGGCTTAGAACAGATGACTTAAGTATGTGATGGTATTTTTGCTGCTACCTTATTTTTACCCTTTTTTTGAAGGGAGTTGTAATTTATTGATTTTATGGATAAATTAATTATCTCTTATAAAAAGGGTTTTTCACTTTTTAGTAGTTATGCTATTTAAAAATCAGCAGGTTAAAGTTAATATGTAACA # Right flank : GCGGCAATGGCTGGAGAAGATGAACAGGAGTTTCGCCAACGCTGTATTAGTGGATTTCAAAAAGCTGATGCTTTAGACACCATGATTGAGGCACTACAAACAACTGCGCAACAATTGAGTCAGGTGGCACGATGAATATTCTCTTAGTTTCCCAGTGTAATAAACGAGCGCTAACAGAAACCCGCCGAATTTTGGATCAATTTGCTGAACGTAAAGGTGATAGAACTTGGCAAACGGCTATCACCCAGGAAGGTTTAAATACTTTGCGTAAGTTATTGCGTAAAACGGCACGTCGTAATACGGCGGTGGCTTGCCATTGGATAAAAAGTGGTGGTCAAACTGAGCTGTTATGGATAGTCGGGAATTTGCGGCGCTTTAACTCACGAGGAGTTGTACCTACAAATACAACACAACGTGATGTGCTGAAAAGTCAGGATGAAAATCATTGGCATAGTGTAGAGGCTATCAGCTTATTGGCAGCGATTGCCGGGTTATTTCAT # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 237801-239449 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFB01000001.1 Photorhabdus laumondii subsp. laumondii strain IL9 IL9_35_scf0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 237801 28 100.0 32 ............................ GTCTGTTACTTATGAACAATCAAAATATCTTT 237861 28 100.0 32 ............................ GATGATAAGCTATATCTTGTAGCGTTTAATGC 237921 28 100.0 32 ............................ TGCTTGGGATACGACGTCTTTTAAAGTCGATT 237981 28 100.0 32 ............................ TTTACCGTTCAGATAAGTGACGGCTGGATTGA 238041 28 100.0 32 ............................ AGCATTAAAGCCATCATATTCCAGTTCGAAAC 238101 28 100.0 32 ............................ TGTTGCTATCCATGATAACATTAAGATTAACA 238161 28 100.0 32 ............................ TGAATCCGAATTAACAGATTCCGACGCTATTG 238221 28 100.0 32 ............................ ACCTACATCCATCGGTATCCGGAGGGGTAATC 238281 28 100.0 32 ............................ CATGCCGAGTTGTGGATTGATGATAGTCAAAT 238341 28 100.0 33 ............................ AGTTTGAAACCATCACTACGAGAATTATTAAGT 238402 28 100.0 32 ............................ AGCGGCTACAATGTCTATGCTATTCAGTGGGT 238462 28 100.0 32 ............................ TGGGCTGAATTTATTAAACCTGACGCGCCGGA 238522 28 100.0 32 ............................ GATAAGTGACCGAAAACAGGCTTTACATCAGT 238582 28 100.0 32 ............................ TTGTTGCATCGTATGGTGATGAACAAGTTTTA 238642 28 100.0 32 ............................ GGTGAAGAAGATAACAAGTCGTATTACGAAAC 238702 28 100.0 32 ............................ AGCATGTAAGCGAAAAGGAAAATACCGATGTG 238762 28 100.0 32 ............................ TTCTCACCTTTTCGCCGCACATAGCGGCCACC 238822 28 100.0 32 ............................ TTTTCGCTTACATGCTGGACACTCTCCTGCAT 238882 28 100.0 32 ............................ TTATGGACAGGCATTATTAGCTTTATTGCAAA 238942 28 100.0 32 ............................ TGATAGAGCTTATTCGACAGCTATAGCAAATA 239002 28 100.0 32 ............................ TGACCTCTACGAAAACCTTTCAAGGCATTTCT 239062 28 100.0 32 ............................ TAACGGAGGACTATTACCCCACAGGGGCATAG 239122 28 100.0 32 ............................ TACGGCGAACGTATACAGATTGTGCGGCCACC 239182 28 100.0 32 ............................ ATGATTAATCCATCGACTGCGGGTAAATCAAA 239242 28 100.0 32 ............................ ACTACATGCTTCTTACTGACGTATATAGGTGC 239302 28 100.0 32 ............................ AAAATGCTGGGCTGCTTCTGACAGGGATAGAC 239362 28 100.0 32 ............................ ACTCCACATCCGGCGCTTGATTCACATCTACA 239422 28 78.6 0 ...........T.........AGC.C.C | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCATTGAATGATTTGCAGTCTTTATCTTGGTTAAAAGGACTCCGGGATTATGCTGAGGTGATTGATATCAAGCTGGTACCTAAGGATGCTCGATATCGTCGTGTTAGCCGAGTGCAGGTAAAAAGCAATGTTGATAGGATTCGCCGTCGTTCGATTAAAAAAGGATGGTTAACGGAGGAACAAGCCTTGCAACGCATTCCTATCAGCAAGGAACAACGCACTCATTTACCGTTTCTGTACCTTAAGAGCTTGTCATCAGGACAAAGTTTTCTGTTGTTTGTCAAACAAGGGCCAATACAAGACAAACCGACGTCAGGAGTTTTTAACTCGTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : CTTGATTGAGTGCGCTAAAAAAGCAACCTTTTTTCTTCTCGATATGCATCAATTGTTGTGCTTTTGTGCATATTCTTCACTATTAACCCATTGGTGGTCTTTTTCCCAGGTAAATAGCCATTTACGAGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGGTAGCCTTTGGGCACCATTACCACATCTTTATTGTGAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACACGTTGCATGCAGAACCCTTGAGAAGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGTGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAGCTGGTGCAGCCTTCATCGGTAAAGACTTCAACCACCAACAAGCTATCAGCAGGTTTATTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAACCATTGCCACGTTGTTCTGCATCAATAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //