Array 1 413786-415399 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDBC01000002.1 Salmonella enterica subsp. enterica serovar Anatum strain LJH#720 NODE_2_length_685094_cov_47.0591, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 413786 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 413847 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 413908 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 413969 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 414030 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 414091 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 414152 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 414213 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 414274 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 414335 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 414396 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 414457 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 414518 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 414579 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 414640 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 414701 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 414762 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 414823 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 414884 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 414945 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 415006 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 415067 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 415128 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 415189 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 415250 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 415311 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 415372 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 431714-432231 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDBC01000002.1 Salmonella enterica subsp. enterica serovar Anatum strain LJH#720 NODE_2_length_685094_cov_47.0591, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 431714 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 431775 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 431836 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 431897 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 431958 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 432019 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 432080 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 432141 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 432202 29 93.1 0 ............TC............... | A [432229] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //