Array 1 3-451 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHJF01000009.1 Marinomonas arctica strain 328 contig9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 3 29 96.6 31 ............................T CTACGTTAAAAGCAGAGCACACACAGTTATC 63 29 100.0 31 ............................. TGTCTGTGTTGAATAGAATAGGGCGCTCTTT 123 29 100.0 31 ............................. TGCAAGAACGAACCTTTTAGCTTTAACTTTT 183 29 100.0 31 ............................. TGCAAGAACGAACCTTTTAGCTTTAACTTTT 243 29 100.0 31 ............................. TCAAACACAGCAAAGCTGTGGCTAGCAGTAG 303 29 96.6 30 ............................G TACAGCCCTTGGCGAATATCACCGCCGTTT 363 29 100.0 30 ............................. ACTAGGTAGTTGGCGCTTGATCTTCGATTT 423 29 75.9 0 .....T......G.....T......GTTT | ========== ====== ====== ====== ============================= =============================== ================== 8 29 96.1 31 GTTCACCGCCGAATACGCGGCTTAGAAAA # Left flank : TTG # Right flank : TATGGGTTCCCACCTTCAAGGCTGTCATTAAACGCCTTCCGTCAGTCTTGTAGGTCGCGATTTATCCTGAAAAAAAAATAGCATGCCGACAAAAAACTCGCCACGACAAATTACGTCTTGTCGGGCTAAAGCCACGACCTACAAAAAAACAATATAAATCAACCAATTGTTGGCTAAATAATGTTACATGCCTGATCACGGTCGTACCTCCCTCATCATGCCTACAAAATATGCTCGCTACCTTTAACGACAGCCGTATTCAAGGCTGTCGTTAAACGACTTCCGTCAGTCTTGTAGGTCGCGATTTATCCTGAAAAAATAGCATGCCGACAAAAAACTCGCCACGACAAATTACGTCTTGTCGGGCTAAAGCCACGACCTACAAAAAACAATATAAATCAACCAATTGTAGGCTAAATAATCTTACATACCTGATCACGGTCGTGCCCCTTATGCAGCCTTAGGGTTTATTACCTATGGGTATCAACATACTCTTTTAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGAATACGCGGCTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9994-4386 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHJF01000002.1 Marinomonas arctica strain 328 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9993 28 100.0 32 ............................ TAGCTCTTGAATTGCGTTCTCGTTTCCCTGCT 9933 28 100.0 32 ............................ TAACACTTTGCGACCTTCCTGAAAGATGTATT 9873 28 100.0 32 ............................ TTGCACGCAAATTTCAGCATTCTAGAAATTTA 9813 28 100.0 32 ............................ ACATTCTTCTTTCCAAGTAGATCCATAATGAA 9753 28 100.0 32 ............................ ATTTATCTAAATCAGCATAAGAAAGCGCCACA 9693 28 100.0 32 ............................ TAAAAAGGTGACTAAAAATGGCTAGAGGAATT 9633 28 100.0 33 ............................ TGCAAGCTAACCCAACAACTGCAACAATTTACT 9572 28 100.0 32 ............................ TGATGAATCTGGGTGCGTCTGGGTTGATGTAG 9512 28 100.0 32 ............................ CCAATCGTAAGTATCAATAAAATCACCGCAGC 9452 28 100.0 32 ............................ TCTATCATTAGGTATGTAAAAAGAAATATTTG 9392 28 100.0 32 ............................ ACTTTGGAGGGGTATTTTCGAGGCTGCAGCTG 9332 28 100.0 32 ............................ TGTCTGTTTTCTAAACCTCGGTTAAGTTGTGA 9272 28 100.0 32 ............................ TGAATCTGCGCGTCCGTAGCTGTAACGTTTGG 9212 28 100.0 32 ............................ TGAATCTGCGCGTCCGTAGCTGTAACGTTTGG 9152 28 100.0 32 ............................ ACTACCTGCATTTTTACAGCGGTGAAACCGCA 9092 28 100.0 32 ............................ TAACGGATTATTTGCTGGCTATCGGGCCATGA 9032 28 100.0 32 ............................ AGGCATTGACGACACCTATGGATTTTTCGCTC 8972 28 100.0 32 ............................ GCAACGCTATTGCTCAACTGAGCAACCAAACA 8912 28 100.0 32 ............................ GTACACACGCTCACGACAGAAAATAGATATGG 8852 28 100.0 32 ............................ TTTAATCGTCGCACGCACCCCCAAACCATCAC 8792 28 100.0 32 ............................ AGACACGTATCTTATGTGTCTTTCCGATTATG 8732 28 100.0 32 ............................ GTCAATCCGGAAACCATCCATGAACCTGTCGT 8672 28 100.0 32 ............................ AAACAACTATTAATAATGAAATGTTTACCTGC 8612 28 100.0 32 ............................ TGACACGTCAACTTTTGGCGCTTCAACGACAG 8552 28 100.0 32 ............................ TGCAATCATTGAAGCGTAAGTGTGGCCTTGTG 8492 28 100.0 32 ............................ ACGTGTTGCCAGTGTGACACCTCACGCCAATT 8432 28 100.0 32 ............................ TGTATTTTAGTTAATGTTTTATGTCTGCGTTG 8372 28 100.0 32 ............................ TGTATTTTAGTTAATGTTTTATGTCTGCGTTG 8312 28 100.0 32 ............................ TGCATAAAATGCTTTACGGTTAAACTCAACGT 8252 28 100.0 32 ............................ TTTACCGTTCCAAGCACCACGTTTACACCATT 8192 28 100.0 32 ............................ TTTACCGTTCCAAGCACCACGTTTACACCATT 8132 28 100.0 32 ............................ AATCACTAATGGCATGAAGCCAATAAGAACAA 8072 28 100.0 32 ............................ TGAATACCGTAGACTAACAGCTAGCGGTATCA 8012 28 100.0 32 ............................ TTTTAGAAACAACAAGGAAAAGATAAAGCCTG 7952 28 100.0 32 ............................ GATATGACCCCATTCACCACCGCTGGTTTCTG 7892 28 100.0 32 ............................ TGTACTTATAATAAAACGTTCGTACGAGTATA 7832 28 100.0 32 ............................ GTTTAAGATTGGCAAAAAAATCTTCTCATACA 7772 28 100.0 32 ............................ ATCTAATACATTGCAACTAATTAGTACAAAAT 7712 28 100.0 32 ............................ AGTAATCACAAGCATGGGTACACTAGAAGACA 7652 28 100.0 32 ............................ CAGAGTAATTTTCGAAGATACACTTCGGGGCA 7592 28 100.0 32 ............................ GAACCGCATGGAATGCAGCATCACCCTCGCTA 7532 28 100.0 32 ............................ TAGTAGATAATGCCCGTGGCGGCAGTGTCTTA 7472 28 100.0 32 ............................ GCAGACTTAAAAGCCTTGCTGTCCGTAAAGGT 7412 28 100.0 32 ............................ TCGATAATTAGTATCAAGCTGGGTATAAATTT 7352 28 100.0 32 ............................ TGATTGCGCGCCGTAAACTTGGCGTGATTCTT 7292 28 100.0 32 ............................ ACTATATCGGTCAATACATCGCCTGTCTGTCT 7232 28 100.0 32 ............................ TAATGGAGGGTGAGGCGTTGAGCCTTAACTCT 7172 28 100.0 32 ............................ TCGCGCTCTAGCCACTCGATAGAGCTAAACAC 7112 28 100.0 32 ............................ TCATCAATCCATGCTATTAATATTCGAGCCTT 7052 28 100.0 32 ............................ ATTAGGGCGCTTCCAAAGCATAAAACCAAAAA 6992 28 100.0 32 ............................ TACTTGATGTAACTGGTCTGAGTGACACCATC 6932 28 100.0 32 ............................ AAAAACAGCGTCGTCGTCAGAATTGCCTTGAG 6872 28 100.0 32 ............................ AGACCTCAATCGAGACGTACCGAATTCCATCC 6812 28 100.0 32 ............................ TAAGTTACTGACAACAAACGATTTTTTGTTTT 6752 28 100.0 32 ............................ TACAACTATTGATACACCTTTCTCGTCTTTGA 6692 28 100.0 32 ............................ AGCACGACTTAATGCTATTCGACCACACGACA 6632 28 100.0 32 ............................ TTTATACGTAGAAGTGGCTGAAAAACAAGGTC 6572 28 100.0 32 ............................ TTTTACTGCCATGAATCATCATGTTGCTAAAC 6512 28 100.0 32 ............................ AGAATGTTCATACGGGCAGACGAGCCGCCCTT 6452 28 100.0 32 ............................ TATTGCCTACTGACGTGTACATTGGCCTAATC 6392 28 100.0 32 ............................ TATGCACTTAGCAGTACTTAAAGCAACTAAAT 6332 28 100.0 32 ............................ GTTATTTGGCCCCATACTTACAACAATTTCGC 6272 28 100.0 32 ............................ TTTTTCATTGCAGGTATAAAAGTTTTCAGTAT 6212 28 100.0 32 ............................ TTTTGTATTCCCAAGCCTTTGCTTTGCTATGA 6152 28 100.0 32 ............................ TGAATGATAAAGCGGTAATTAAATGTTATCGG 6092 28 100.0 32 ............................ TGTAGTTGGACGGGCGCGTCTTGTTCGGTAAT 6032 28 100.0 32 ............................ TTCACAAAGAGCTTGTTCGATGGTTTCGTCTG 5972 28 100.0 32 ............................ CGTGGACTTTGTTCGTTGGGTGAAAAACGATT 5912 28 100.0 32 ............................ AAACCAACAAAACGCGCACATGCTGGAAAGTC 5852 28 100.0 32 ............................ TCTTGTTTAGTGTCGAAGACAACAGTTTGCTC 5792 28 100.0 32 ............................ AGATACTTCACACTGATATACGCATAAGAATA 5732 28 100.0 32 ............................ CTCTCCAAGTAGATCGAGCAAGACCTTTTAAG 5672 28 100.0 32 ............................ TTTAGGTATCGGGGCTTTTTTGTGCCTTGACA 5612 28 100.0 32 ............................ TGTTCAACGTCGGATGCTTCCCATGACTTACT 5552 28 100.0 32 ............................ CTTTATGGTCAGCACTTGGCGCCCACGCAAAA 5492 28 100.0 32 ............................ ATTATCGACAACCCGAAAAAAGACCAAATCGA 5432 28 100.0 32 ............................ GTCAGGACGATTACCAAAGGGCTTCCCGTCTA 5372 28 100.0 32 ............................ TACTGATAAATATAGAATTATAAAAAAATAAA 5312 28 100.0 32 ............................ TAAAAACCGTGGGTGAGAATTTTATTAATCTC 5252 28 96.4 32 .........A.................. TCCAATAAAAGCACTGTACGCAGTACCAGCCT 5192 28 100.0 32 ............................ ATGAGTACGCACCATATTAGCGGAATGGATGT 5132 28 100.0 32 ............................ AGCACGTCACCCGTAAAAGTCATTTGCAGGCG 5072 28 100.0 32 ............................ AGCACGTCACCCGTAAAAGTCATTTGCAGGCG 5012 28 100.0 32 ............................ AAACCCAAAACTATTGTTTAGCGCCTCGCTAG 4952 28 100.0 32 ............................ TGGAACGACAAGCCCAACGACAACCGCCGATT 4892 28 100.0 32 ............................ TTGGCTATCTGTAAATGTAAGCCCTAACGTTT 4832 28 100.0 32 ............................ ATTAACAGTAAACATAGGCGTACGAACAACGG 4772 28 100.0 32 ............................ AGTCAAAGAATTTTTGAATTTCGATCAATAAT 4712 28 100.0 32 ............................ GCAAGAAGGTCAGGTGTATGTGACTTCGCTTT 4652 28 100.0 32 ............................ GAACCCGCGACGGAAATTAGGATTGTGACAAC 4592 28 96.4 31 ....................T....... AAAAATGGCTTGGGAAAGTTGAATAGGTGTT 4533 28 100.0 32 ............................ TCTTAAAATATGCGCTATCACTTCATCCGTCC 4473 28 100.0 32 ............................ CGTCAAAGAATTTTTGAATTTCGACCAATAAT 4413 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 94 28 99.9 32 GTTCGCCGCCGAGCACGCGGCTTAGAAA # Left flank : AAGATTAGAAAAGTTGATGGCGCTTTCTTGGTTAGGTGGTTTATCAGGCTATTGTGCATGTAGTGATATAAAAATCGTTCCTGAACATGCCTTACATAGGCGTGTTTCCCGTTGGCGTCCTAATATGAGTCAATCGCACCTTAGACGATTAATAAAGCGAGGTTCAATTTCAGAACATGAGATAAAGGCTTATAAAGCCAAAATGTTTGCTGAGCAGATGACTACCTTGCCTTATCTTGAAATGGAAAGCACTTCCAATAAAAATCATCATCGACGTTATATTCAAATGACAGATGTTCAAGATAGTTCACTGGTTGGTGATTTTGACTATTTTGGCTTGAGTAAAGCAGCAACAATTCCTTGGTTTTAACCAATGAAAAAAGCTCTTTAAAAATATCCTTTAAAAACAGTAAGTTATAACATGCAGAAAAAACATAGGTAAAAACGCTAATTTTTACCTAACTGCATGTTGTAACTTATTTTTTTGCGAATAAACTATT # Right flank : AGCACATTTTGTTCAAGTGCTAGTGTGGAATTAAGTGGAAGTAGCAAGGTCCGCTTCCCTCTATGTGTTGCTTAGGTTTAGAAGGTAAGTCATCATAAACGACATTTAACCCCTCTAGAATCATAATCAATTCGTGGTATTCTTGGTCGTGTGCTTACAGCACAAAACAAAGGAAACAAGCTGCTTCATGCAATAGAAAAGTTGAAAAAAGCTTGACCTATTATATGAGCACACTCTGTTAACACATCGTAACTGACCAACAACGGGGTTCAGTGGGCTAGTTAGTAGGTGTTAGAGTATGTGCAGGAGCCATTAAATAATAAGGACGTGAACGTATGAGAAAATACATAATTGAATCAGGCGACACTATTTCTGCTATTGCAAAAGCCAATGGTATTTCACAGAAAAAATTATTAGCGGCCAACCAATCCATCAGCGACGCCAATGCTATTAAAGTGGGGGATCAATTAACGATTCCAGAAAAGATTGAAGACCCAGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCCGCCGAGCACGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.60,-6.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 1988-1840 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHJF01000056.1 Marinomonas arctica strain 328 contig56, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1987 28 100.0 32 ............................ ACCATCCGCGATTAACTTCATCGTTTCTTTGC 1927 28 96.4 32 ........................T... TGCATGCATCTTGCCCTCTGTCGTATTGGGGT 1867 28 85.7 0 .......................AG.TT | ========== ====== ====== ====== ============================ ================================ ================== 3 28 94.0 32 GTGTCCTGCCGCATAGGCAGCTGGAAAA # Left flank : CAGCCGTATTATCAAGTGATGACAGAGAATGGACTTTTTGAAATAAGCGATCCTACTATTCTTGAACAATCAAACACATGTATTAAATACGTTCGAAATCAATCAATAGACAAACTAACACCAGCAGCTAAGGCTAGAAGGCTTCGTAGAGCAAAGAAAAGGGCACTTGCAAGAGGCGAAGAATTCAATCCTGTTGACGCTCAACTAAAGGAAGTTGATTTTTACCATTCAATACCAATGGATAGCTCACAATCTGGTAGGGCTTATATGCTGAAAATTCAAAGGTATGAAATTGATTTTCCGAAAAAAGAAGATATCTTTAATACATGCTCTTATGGATTATCAACGAACTCGCGGTATCAAGCGCTTTTACCAATCTAATTTGGTAGAAATAAAACGCATAAAAATCAAATGTTTATAAACAACCTGAGAAATTAGGTGTTTTGTATAAAGTTGGTCTATATTATTGTAAATTAAGACTATTTTTAAACTTTGCTGTA # Right flank : AGGACTGGAAGTAAGATTCCGCAACGATGAACATAAACCTACCGAAAAGGTAGATAAAGCCCACGGATGGGCAATTTCTATTGTTTATAATTTATGTAAGAAACATTGTTAAATGATAAGGAATAGCAGTAAGTGAAATTATACATCATTATTTGATAATGGGTTTTAATAGAATGAAGCATCGATAGGGTATTCATATAATATGAGATATTAATCCCAATATTGCTTAAAATTAAGTTGCCCCTCCCTAATATGTAGTATGCACTGACGTTTATTTAAAAAATGCTAATCTTGATCGTAAGTTGATAGACCAGGTGCAATGCCGCGACTCTCAACATCATACAAAGTCTGATGATTACGCAACCATAGCTGGTAATTATACCCCTTTAAGCTATGATCTTCCGTGCAGTCTACATTCCAGTAATGTAGCCAATAGCCCACTACCGCAGCTCTTACCATGAGTTTGAGTGCGCCATCCTTCATATCGAAATCATATTCTA # Questionable array : NO Score: 3.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCCTGCCGCATAGGCAGCTGGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTACTGCCGCATAGGCAGCTTAGAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 21919-25427 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHJF01000008.1 Marinomonas arctica strain 328 contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21919 29 96.6 31 ............................T GTGAATCTTTCTTAGCTGCAAGTTAGCCTTC 21979 29 96.6 31 ............................T GTTGCAAAGTGAGTGGTGACAGCATGGAACC 22039 29 96.6 31 ............................T CCAAAAATATGTTTAACGGAATCCGTCAAGA 22099 29 96.6 31 ............................T ATAATTCTCGCCAATTCTTCATCGCTAAGGT 22159 29 96.6 31 ............................T AATCAGCAGTTCTACCAGTCTAATGCGTTGC 22219 29 100.0 31 ............................. AGGCCAAAGCAAAACTGTCTTACCTGACCGT 22279 29 100.0 31 ............................. GGACGGGCAACATTTACAGTAGAAAGCGCGG 22339 29 100.0 31 ............................. ACGTGAATTTTACCAAAAATGTTCAATTCTT 22399 29 100.0 31 ............................. AACGAGACATTGCGGAGTTGGTGAACTATGC 22459 29 96.6 31 ............................G CATTGGACGTGTTAGAAGGCCCTATTGAAAT 22519 29 96.6 31 ............................G ATAAAATCTAGTTCGTCCCACTTCTGGTTTT 22579 29 100.0 31 ............................. AGGTAAAAAACTGTTCCTTTTCAGTCATCTT 22639 29 100.0 31 ............................. CGGCCGCGCTCACAGCGCAGATCGTAAGCGC 22699 29 100.0 31 ............................. TGCAAGGCATAAACGCCCGATATATTCATAA 22759 29 100.0 31 ............................. CAAACCCCAAATCCATCAGCTTAAACAGCGA 22819 29 100.0 31 ............................. CGCTTTGATCGTGTGAATAGAGCATCTTAGA 22879 29 96.6 31 ............................T GCGGGGGTGTGTGATGGCTGACCACGTCGCT 22939 29 96.6 31 ............................C AACGCGTTGCAAGATATGGAAGCGGTGCAAA 22999 29 100.0 31 ............................. TCAATCAAGACCGCGCCACGTTCAATCATTC 23059 29 96.6 31 ............................G CTATGCCGGCAACCGAACCCCACAGCACACT 23119 29 96.6 31 ............................T TACGGGCGGCTCTGGTATTGTCATGATCACT 23179 29 96.6 31 ............................T GAGTTTTGGCAAGATGAAGATCTTGCGGAAA 23239 29 96.6 31 ............................C AACACGGTTTCAAGTCAAGTGAATGAAGTTT 23299 29 96.6 31 ............................T GCATCTTAAGTTCCTCTGTTCGTTACCTACT 23359 29 96.6 31 ............................T TTTAGAGCTAGCGCCTGATCTAGTGAAACAA 23419 29 96.6 31 ............................G ACAAACACAGCAACTTCCCAACTTAATGCCC 23479 29 96.6 31 ............................C GTTAAGCACCCATACAGCGCCAGCTAAGCCA 23539 29 96.6 31 ............................G ATAATGTCTTTCTTTTCCACATCTTCAATAG 23599 29 96.6 31 ............................G CAGATAGCTAGCATTAACTAGACTGTCTAGG 23659 29 100.0 31 ............................. CTTCTTCAAGTGCTGTTTGTGCATCGGTTGC 23719 29 100.0 31 ............................. TCTGATACGTTTGAATGCGCGGCAGTCCACC 23779 29 100.0 31 ............................. GACGCATACGGGACATTTCGCGGTTTTGTCA 23839 29 100.0 31 ............................. AAACCCTGTTTGATTACTGCGTTGTTTGATT 23899 29 96.6 31 ............................G TGGCCGTGGTAACCTTCGCTTGAAATCATGC 23959 29 100.0 31 ............................. AATGAAAAAAACGCGGTCCCACTTAGTGAAA 24019 29 96.6 31 ............................C GCTGGCGCGGGCGGTATTACGTCGTCCTCTT 24079 29 100.0 31 ............................. CGATAGCGCGATCTATTGAGCGTGGTGCTTA 24139 29 96.6 32 ............................G CGCATACGTTTAGCGAACAATCCGAATATTCT 24200 29 96.6 31 ............................G CCTATTTGTAAAAAGTAACGATGTTTTTAAA 24260 29 96.6 31 ............................T GGTCCTTAGTAGCTCGACGCTCTATCGTTGC 24320 29 96.6 31 ............................T CCAGGCTATACACCTGTTGATTATTCGCCAG 24380 29 100.0 31 ............................. CGCGACCACACGCACATGGGATTTCGCCTAT 24440 29 100.0 31 ............................. TTGCGCCGGATGGCGGTATCTACATTTTCAA 24500 29 96.6 31 ............................G CCTGTTTACTGGGGTTTTCTTGTTTTTTTAG 24560 29 96.6 31 ............................T TTATAACCTCAACCAAGTCACGCTCTTTTAT 24620 29 100.0 31 ............................. TTCCAGCCGATACGGCCACCGCGAGACATAA 24680 29 100.0 31 ............................. TAGAGCTAACATCTTTTAATACGCGGTGCAT 24740 29 100.0 31 ............................. CGTCTACATAGAACAACAAAAAACAGGGGCT 24800 29 96.6 31 ............................G CGCACGCCTTGGCCGTGGTTATTGACCTCCA 24860 29 100.0 31 ............................. ATGTTGGTAAAGTCAAATGCGCTGTGAAATC 24920 29 100.0 31 ............................. CAGCAACAGCACACCGCAATCCGTAACCGTA 24980 29 96.6 31 ............................C GACTTATTAAAACGGATTTTGAGTTTTTCGC 25040 29 100.0 31 ............................. GTGAACTGTTCAGCTTGAATCTTAGCAAAAT 25100 29 96.6 31 ............................G TTATGACTAATGATAAGATTGTTGAAGTTGT 25160 29 96.6 31 ............................G CCAAAGCCCACTACATCAGACGCTTTATCTA 25220 29 96.6 31 ............................T AAACAGAAGGCAGACGCATGACGAACGGCAA 25280 29 100.0 31 ............................. CCCACACGAAACGGCTTGACAACTTTATACT 25340 29 96.6 31 ............................G TTAAAAAAACCATATCGATTATAAACAACCG 25400 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 59 29 98.0 31 GTTCACCGCCGAATACGCGGCTTAGAAAA # Left flank : TGTTAGACGTTTACATGTGACCAGTCTACCGATACCTCATGCTGGAGGTGTTTATGCAGCAAAGCCTCCAATAGAAATTATTGGTGGGTTGCTAGCGCTTGAAAATGAACAAAAAATGTCTGAAACGTTAAATCGTAATTTAGAACAGCAAAAAGAGGATAAAGGTCTCTTAAATATTGGCTGTGCTGCCGATGACTGCTTTTTCTTTTATGAGAAAAACCGTCATGAAATGACGGTAAAGCAACACTCTAAAGCCACGACTGCTTTTTTATTTGAGTTACTGTCACAGCTACAAAGTTGTGGAACCGTGCCTATGATCGATATACATGCTTATGGTCAATGGCTTAAATAGATAAGATACAAAAAATACCCTTTTTTTTAGAATAATCGTCAAACCCAGTAAAATAGGGGCTTGGCGACTCTCGATAAAAACAATGGTATTTTTGTCAAAAAGGTCAAAAGCTCTTTAACAATCAAATACTTAATGGTATTTTTTTATA # Right flank : | # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGAATACGCGGCTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.40,-6.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //