Array 1 111570-110687 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJDYQ010000003.1 Corynebacterium diphtheriae isolate YEM0010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 111569 29 100.0 32 ............................. CAGTGCGGCCCGTCGATCCCACGCATGGGAAA 111508 29 100.0 32 ............................. CCCAAACCGAGGCCCCCGCAGCTTCGAAGAAA 111447 29 93.1 32 C............T............... ACTCTTCCTGCAAAGGCCTAGTCATGATGGGT 111386 29 100.0 32 ............................. TGGAATCTGACTGAAAAGAAAGATCGCGGGGT 111325 29 100.0 32 ............................. ATTTTGGCAAGCCGTTTAGCTGTGGGAATGAT 111264 29 100.0 32 ............................. ATTGCCCGCGTCAATGCACTCCGCGGGTACTC 111203 29 100.0 32 ............................. CGGCTATGGTTTGCGCGTTGTTCGTCGAGACG 111142 29 100.0 32 ............................. CGGTTAATGCGATCGCAAATCGCTCAGGGATC 111081 29 100.0 32 ............................. CAATCGCAAGCGCGGATTCATTCGGCGGCAAA 111020 29 96.6 32 C............................ CAACACACAATTGACATAAATTCGATGGAATT 110959 29 100.0 32 ............................. ATCTTTTGATCGAGGGGCGTAACGCCGCGGCT 110898 29 100.0 32 ............................. CGGGCGAACGCGCCCTTGAGTTCGACGATCAG 110837 29 96.6 32 C............................ TAACTTCTACTCCGCGCTGCTCACCGATGAGC 110776 29 100.0 32 ............................. ATCCATGATCCATTCCAGGCCTCCATCAGAGG 110715 29 96.6 0 C............................ | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.9 32 GGGCTCATCCCCGCTGGTGCGGGGAAAAC # Left flank : TCCCCGTTGGTGCGGGGAAAACACTCTTCCTGCAAAGGCCTAGTCATGATGGG # Right flank : TCTTATCAAGCTGCATGTTTAGAGACAGTTAGAGCTTATTACATATAACTTTGTTTCAGCAATTTTTCTGCTTCATCTTTATTTCTACTGTTTTAGGATCAGCTATTCACCCAAATTTGCTTAGTCTTTTCTTCTAGCCATAGGCTGGCATTGTTCCCTGCGATCAGGGATGAGCCTTTTTAATATCTTTACAAGATTTACATAGGCATACTTCCCCGCACCAGCGGGGTTTCCTTTTATGCGTCTTCCTTTGGGCAGACCTCCACCTCTAATCCACGTTCATTGGTATAACGCACTAGGAATCGACCTAAACGAGCCTCTCCTCTTTCGTCGAAAAACAACGCAACTTGGCCTTTAAGCAAACCGGATCGTTGCCATTCTGGTGGTGTTTGTGCTTCGAGCGAATCAATAACGGCATTAAAATCCGAATCTCTACGTGTCATTTGGGCTGGCAGACGCACTGTGTTTCCAGCCAATGCCTCAGCTTCTTTCCAAGTAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGCTCATCCCCGCTGGTGCGGGGAAAAC # Alternate repeat : CGGCTCATCCCCGCTGGTGCGGGGAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 1234-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJDYQ010000004.1 Corynebacterium diphtheriae isolate YEM0010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1233 28 100.0 33 ............................ AGACGGTCTAGCGTGGATACGCTTCCGCAAGAG 1172 28 100.0 33 ............................ CCACGGAAAGTTTGCCGCCGAATGAATCCGCGC 1111 28 100.0 33 ............................ TCATGATTGCAGACCTGGCAGACGAGCGCCAGA 1050 28 100.0 33 ............................ GCCGACACCAGCTGGTGTGATTATCTACTTGAG 989 28 100.0 33 ............................ AATGACGCGCTAACCCTACTCGCAGCCCTTTTG 928 28 100.0 33 ............................ TGCGAGCAAGGTCAGTGTCCCCTAAGGATACAG 867 28 100.0 33 ............................ CGGGGTGTTTCTTTGCGAGGGTGGTATCAGTGG 806 28 100.0 33 ............................ TCTGTCCACGCCCCTTCTGTAATTGTCGTGGCG 745 28 100.0 33 ............................ CGAGGCCATGGTATTATTGACCTTGTCCTTATC 684 28 100.0 33 ............................ TCCCATATCATATCCAAAATCCTCGAACGCCCG 623 28 96.4 33 ..............G............. TCGCAAAAGCTCAGATCGTCGCAAATGTTCTGG 562 28 96.4 33 ..............G............. GCACGGTGTGAGATAGCCACTGCGATACGTGGG 501 28 96.4 33 ..............G............. GTATGTACCTGTCCGGCGCGTTTCACTGTTGAG 440 28 96.4 33 ..............G............. CTCCATTTGTGAACGCAGCTCAAACATCATCGC 379 28 96.4 33 ..............G............. TTCAGCCACGCTATTACAGTTTCAGGGGTGACG 318 28 96.4 33 ..............G............. TTATGCTAAACCCCCTCGGTCTTGTGCTTGGCG 257 28 96.4 33 ..............G............. TCATACCACGTGTAGAAACGGTAGCCTAGCAAC 196 28 96.4 33 ..............G............. TCGTCGGCAAAGTCAATGTGCTTTCGATCGAAC 135 28 96.4 33 ..............G............. GCTTCACATCGCCTATTACTGCCGCGATTGGTC 74 28 92.9 0 ..........T...G............. | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.0 33 GGCTCATCCCCGCTAGTGCGGGGAAAAC # Left flank : TGATCTTTCCCTTTTCGAGCAAGACGACGTCTCATCTTGTTGAACCATTCAAGAAAATCAAAAGGTTCCGCGTCCATGTCGATATCCATGGAATGGGCACGCCAGAAAATAGCCAGCAAAAGCCGCATCACAGCATAGTCTTGAGCCGGGGACTCCCCCTGAATATAGGCAACCTGCACCTCCCCCGCGAAAATATCTCGTATTCCAACTGAAATCTGGTTACCTTGAGTATCAAGAGCCAGAATCCAGCGGATCTCCAGTAACGAAGCCACCACCAACTCCTTCCTGATTGTTTTAAAACTCCCAACTTAGGAAGCACTTTCTCCACAGAATACACTGTATAGATATTAAAAGTTAGTTTTTTCAAAATTTTTTAGTAGAGCCATCATTTACTGATTTCTCTGAATGAAAAACACAGATCCCAAAACCCGTTCTTCAACAAAGATTCATCCACCCTGCTAGTGCAAGGAATCACGGCGGTCCAGTTCTCAAAGTCCCTG # Right flank : CTTTGTGGCCTTTATAGCCAGACCCCACGGGCGAGGCTCATCCCCGT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCATCCCCGCTAGTGCGGGGAAAAC # Alternate repeat : GGCTCATCCCCGCTGGTGCGGGGAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //