Array 1 552296-552060 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012373.2 Beggiatoa leptomitoformis strain D-402 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================= ================== 552295 35 100.0 32 ................................... CCGATATACAAAACCCACTACATCAGCATCTT 552228 35 100.0 33 ................................... CATGGTGTTTTGTTCTTCAAGGAATTGTTCCAT 552160 35 100.0 31 ................................... CGCCCCCCAAGTCTTCAATCAATGATGGGTA 552094 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ================================= ================== 4 35 100.0 32 GTTGCAGCCTTACTCGCCAATGCAGGCGATTGAAA # Left flank : TCGCTATAGCTTTGACGAACGGCTTAACAGAGGGAATAAAAATAAGGTTTTGGATTTTTCTATTTGAAGACCGAAAAAACGATGTTTATTCGCTATAATCGGTGGAAGTGTTGTGTGGATTTTTTCTTGTTCTGTGGGTTTATTAAAAAACTGAATAATCTAACAGGGAATGCTGACACCTAACTTTTAATGAGGAACATTGCAAGGAATCGTGATTTAGAGGAAAAAACCGATTTTTAAAGTACGTTTTGAATTGAACACGACTGAGCAATTTTCCATAAAATGAGAGGAAATCCTTTAAAATCAAGAAGAGAGTTCTACTTTTCGAGGTATCGAAAAAGCGGAGATTTATGAAAAATGGTTGCTTGTAAATGATTGATTTAATACATAAAAAATCTATGCAAAAAGTGTGCAAAAGAGTTCTACTTTTTGAACGAATTTTTAGTGAAAAATATGGCTTGCAACTCAGCGAAAAATATGTGATTATTTTAACCATCGGG # Right flank : TGAAAAACCTCAGTACACTTAAAAAGTGCTGAGGTTTTTTTTATGCCTATTGCTTTATTCCCTATTGGCAACTACAGGGAATTTGTCCGCTGTTTCCGTGATTATCAGAAGACATATTAAAAGAATTAAAGCTGCGCAAAAAAGATGAACAACCCAGAAAAATAAGTGTTTCCAATTGGATACACGCTACACGGTTTTTTGAGGAATGAAAACCTGCCGAACAAATCCGCGCGTTCGCGCTGGGCGCAAATCGCGCGGACTTGCTCAGCAGGTTTGAAGAAAAGATTACAATTTGCTTGGTACAATCCGTGATGCCTCATCTTTAGATATTCCCAATATCGTACCCGGTGAATGTTCTCTACTTCCCAAGTTTTCCATTCCTTTAGGTTCTAGCACTTACACCCCAGATTTTTCAGAACAATCGTATTGCGACTTTTTCACCGCATTAGCCAGTTTTTTTATTTTTATGGTGGTTCTCTCGGCTATTTTTATCACCTTAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCTTACTCGCCAATGCAGGCGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA // Array 2 1966415-1966235 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012373.2 Beggiatoa leptomitoformis strain D-402 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 1966414 35 100.0 42 ................................... CAAGCGTGTAACCAGTCCGTTGTTCAAACTCCCATATGGTTT 1966337 35 100.0 33 ................................... CCCTCCAGCAGACGCTGAATATACCGAGTGTAC 1966269 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 3 35 100.0 38 GTTAACAGCCGGTTCGCCAATGCAGGCGATTGAAA # Left flank : TGCCATGATTTCTACAGGGGCAGAGCGTAATGATACGATTATTAAACAACACCCATTTGATTTATAAAGTATTATTTATGTAGAATGCGTGTTAAAAAGACGGATACTATTGTTTAAAGCGGTGGTATCCGTATGACTAAATGGCTTTGTTTGTAATAATATTAGTGCGTTATGGTGCGAAAAATCAGATGTTCGCTTTTATTGACGGAATCGCGATTAGAAGAAAAAACCGATTTTTAAAGTGTGTTTTGAACTAAGCACGACTGAGCAGTTTTCCATAAAATAAGAGGAAATCCTTTAAAATCAAGAAGAGAGTTCTACTTTTCGAGGTGTCGAAAAAGCGATGATTTTTGAAAAAAAGATTGTTATAACTTATTGATTTTATGAATAAAAAATCTATGCAAAAAACGTGCAAAAGAGTTCTACTTTTTAGAGGAAAAAAACGTTCAAAAAAGGGCTTGCAAGCTACGATAAATTATGAGATTATTTTCAGCGTCGGG # Right flank : TGAAAAAACCTCAGCACTTAAAAAGTACTGAGGTTTTTTTATGCCTATCGTCTTATCCCCTGCTGTCCCTCATTGGATACACACCACACAACTTATATACCTGATGCACGCTAATTGCGTTTTTTAACACAAGACCTCATAAAATCCCACCGCGTTTAATATCTAAGTACCGATTAACAATATGAATCGCTAATTGTTCAGGTTCAGTATCTACGAATATAACCCCTTTATTTTTAAAATTTTCTTGTGATTGCGAGCGATGTCCTAAGTATTCATGAATAGCGGCATAACGTAAGGCATCATTAAACTGCATGACGGGAGCATCTAAAACTTCATTTAAGATTTTTTCGCGTAAACTGGCCAGTAGCACCAAATGTTTTGCACGTAATAGTTTGAGTGCAATAGTTAATTCTTCATTATCTTCATCGCGTAAATTAGAAATAAGAATAATTAAAGCGCGTTTTTGATGATGTTTTAGCAATTGTTCAACCGCGTTTAAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACAGCCGGTTCGCCAATGCAGGCGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA // Array 3 3500145-3500724 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012373.2 Beggiatoa leptomitoformis strain D-402 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 3500145 36 100.0 32 .................................... ACCATAATCCCTAGGTGGACTTTGACATACGT 3500213 36 100.0 30 .................................... AGAAGCGACTTGATAACGCTACGAATTCTG 3500279 36 94.4 31 ........T...T....................... TTCATCAAATGTGTCTCGCCCGTCGATTCAT 3500346 36 97.2 30 ......A............................. CACAATGGAATTGATGAGTATTTGCTCCCC 3500412 36 94.4 33 ............................G....G.. CGTGCATTTCTCGCGCTGTTAAAATCAAGAGTT 3500481 36 100.0 34 .................................... ATAATCAACGATGGCGATGTTGCGTAGTGTTGAC 3500551 36 94.4 34 ........T...T....................... TCATCTATAAAAATCTATTAAGCACTTACCGTTT 3500621 36 100.0 32 .................................... TTGTCAGTCTCTCCACCATACTGCATTAGTTC 3500689 36 97.2 0 .............T...................... | ========== ====== ====== ====== ==================================== ================================== ================== 9 36 97.5 32 GTTGCAGCCTTACACGCCAATGCAGGCGATTGAAAC # Left flank : AAAAGCAGAGTCAGTTAAGCCGTTTAGCGTTATTTCAACAGACGCATGAGTCGGCATCGGTGGCAATGTTAGCCCGTTTACAGCAAGCGGCGATTCAGCATGAAAATGTGTTTGCGGTGTTGGTGGATGCAGTGCGGTGTTGTTCGTTAGGACAGATTACGAATGCGTTGTTTGAGGTGGGCGGGAAGTATCGGCGAAATATGTAAATAGGGTCTCAATCGGGATTTTCGGGGGAATTGTTGGAATATCCTGATTGAGATGTTAAGGGATAAAGAAAGCTGTTTAGGTGATTTTCCTTTAAAATCAAGAAGAGAGTTCTACTTTTCGAGGGTCGAAAAATCGGGGGTTTTCTTGAAAACAGATGTTTTTAATTGTTTGATTTATAATAAAATTTCTTTATGCAAGAAACGTGCAAAAGAGTTCTACTTTTTCGATGATTTTTTTGTGAAAAATTTGGCTTGTAACTGGGTAAAAAATATGCGATTATTTTAGCCATCGGG # Right flank : CTTCAGAGCATGGTGGAATACGCTGCGCTATTCCACCCTACGTTGCTAGGTTGTGGCTTTACTCGCTAATGTGAGCGGTTCAGTCCATAAAAAAAGCCTCAGTATTTTGAATACTGAGGCTTTTTTTATGCCGTTTTAATCAATGCTAAAAAGGATTGATGGATACTGAATCTAACCCGCTACTATTTAACTAATAATGCTGTTATCTAATACTTGTTGACGTAATCGCTCAATAACACTGACTAAATGCCGTAATCCAATCGGTTTAGCAAGATATTCATTTGCACCTACATTCAAACACCGCTCCCTATCTCCACTCATGGCTAAAGCTGTTACTGCAATAATCGGAACCGTTTTAAAAGTTTTATCCGCCCGCAAGTGTGTGATAGCATCCAACCCATTCATTACAGGCATTTGTATATCCATTAATATCAAATCTGGATGCAATTTATTCGCGCTTTCAATCGCTTCTATCCCATTATGCGCAATCGTTGTGCGAT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCTTACACGCCAATGCAGGCGATTGAAAC # Alternate repeat : GTTGCAGCTTTATACGCCAATGCAGGCGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA //