Array 1 162279-160375 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYIT01000003.1 Salmonella enterica strain BCW_5847 NODE_3_length_224713_cov_4.13961, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162278 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 162217 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162156 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162095 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162034 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 161973 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 161912 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 161850 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 161789 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 161728 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 161667 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 161606 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 161545 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 161484 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 161423 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161362 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161301 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161240 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161179 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161118 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161056 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 160953 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 160892 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 160831 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 160770 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 160709 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 160648 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 160587 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 160526 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160465 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160404 29 96.6 0 A............................ | A [160377] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 179842-178410 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYIT01000003.1 Salmonella enterica strain BCW_5847 NODE_3_length_224713_cov_4.13961, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 179841 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 179780 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 179719 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 179658 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 179597 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 179536 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 179475 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 179414 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 179353 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179292 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179231 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179170 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179109 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 179048 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 178987 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 178926 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 178864 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 178803 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 178742 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 178681 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 178620 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 178559 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 178498 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 178437 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //