Array 1 181054-182404 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXHZ01000022.1 Rappaport israeli strain B08008 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 181054 28 100.0 32 ............................ TGCTTAGTTTTGCTGGATAGGGGCGGGTTCGC 181114 28 100.0 33 ............................ ACAAGTAATAGAGACTGTGCCACTGACGAAGTT 181175 28 100.0 32 ............................ ATAGTGTTCCTTTCACCCAACGCAACTGGGAT 181235 28 100.0 33 ............................ GTGTACGTGTCTCGCCTTCGGTGATTACATCAT 181296 28 100.0 32 ............................ CTCTAACGCGCAGGGGTCGACGCGCTTATGCA 181356 28 100.0 32 ............................ ACGTCAACGACGCGATTTTCGCGCTCAATGCT 181416 28 100.0 32 ............................ TCGTCAGGGTCTATAATTCCACTAAATCCAAA 181476 28 100.0 32 ............................ TTACCATCTTTCGCTGCGCTACCAGCCGAACT 181536 28 100.0 32 ............................ TGTAGCGTTATAGAGCTGATGATAGACTCGCA 181596 28 100.0 32 ............................ TCAGGAGCGCTCCACAACCCAGCGCGCGCCAT 181656 28 100.0 32 ............................ GAAAATAAAATTACTGTCGGAAACTGGATATC 181716 28 100.0 32 ............................ TTCCCATTAACACAAGTTGCTATAACGACTCC 181776 28 100.0 33 ............................ ACAAAATAAAATGATTGTTGAGGCAGTGCGCTT 181837 28 100.0 32 ............................ CAATGGAAGTAAATACAATTATTGCAGGTACA 181897 28 100.0 32 ............................ ATCTATATCTCTCACGAGAAGGGAGAATTAAG 181957 28 100.0 32 ............................ AAGCCAAGCGTGAGAACACACAAGCTCAGAAA 182017 28 100.0 32 ............................ TTCCGTTGAGTTGGGTTAGAGTGGAGGCTCAA 182077 28 96.4 32 .....A...................... CAATTCTCACAGCATTGTGCTGCGAGAATATA 182137 28 100.0 32 ............................ ACCAGCCGAACTGCCGCCCTTGTCATCTTTCG 182197 28 100.0 32 ............................ ATCTCCACGGTATTGTGTTTTTCTCAGAAGAT 182257 28 100.0 32 ............................ ATGATACTTACAGATGATGGCGCTATTACCGA 182317 28 100.0 32 ............................ TGAAAAGGTTCTGCGCGCTCAAGTCAATGCAC 182377 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.8 32 GTTAACCGTGGCATACACGGCTTAGAAA # Left flank : ATCCCCACACAACACCTCCACGCCGTACACCTCAACTACACCCCCGAGGACACTACCACAGCATCCAACCCACCCCCTCACCACCACCAACGGCAAACACACCATCGCCCAACAATGGAAACAACAAAACCACCTTAACCGCATTGCCCTCATAGGAGACGGCATAAGCGACATCGCCGCTAAAGGCGCCGCAGACACCATCATAGGCTACGGCGGCATCATCGACCGCCCACAAGTCCGCCAACACGCCGACCACCACCACACAGACCCAAACCTCCTAAGCCTCCTCCCCTACCTACAAAACCCCAACAACATCTAAAAAATAACCTAAAATCATAAAAAACACCCAAACCACCAACCCAAAAAAAACAAAAAAAATTTGGCTCTTTAAAAACATGAAACAAAACAAAAGGGTTAAAAACCACGTTAAAAATTTGGGTCAAACCAACAAAAAACGGTTTAAATCCTTGTAAATAAAAACCAATCAGGCGTTGGGCTTG # Right flank : ATACTGCCATCTTAAGCCGCTCGCAAAGCTACCAAGTACCCCAAGCCGACCCTGCGCAAGCTCGAGATTGGCTCATCACGCAAGACATAGACAGCGCAGAAGCCGAACAACTCTTAGCCCTCTATCGCAACAACCCCTTCCTTGCCTACGCACAACGCGAACAAGGCGCCGCCTTCCTGCGCCCCCAACCGCTACCAAGCCGCGCACAGCCAAGGCGCCACCCCCTATCAAGACCAAGAACAAATTGTCGCCCGCGAAGAACAAGGCTTTGAATTCATGATGAACGCCCTGCGTCTGAAAGACGGCGTCGCGCGTGCATACCTTCCACAACGTACCGCGCTGCAACACAGCGACCTCGCCCCCGTTCTCGAAACCCTCATCGCCAAAAAACTCATTGCCGACGACCCGCAGACATACCGCTGCACCGCGCAAGGCTATGCTTTTCTTAACGATGTGCTGACCGCCTTTTTATAAACAACCATTAAAAATACTTGTCCGTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACCGTGGCATACACGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 275085-278114 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXHZ01000022.1 Rappaport israeli strain B08008 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 275085 28 100.0 32 ............................ TGATAAGCGTTTGTATAGCGTCTATGACAGCG 275145 28 100.0 32 ............................ ATCAGGAGTAACCCTCATAACCCTGTCAAGGT 275205 28 100.0 32 ............................ TGCTGGATGTAAGGCTGTTAAGCGCGCGAGGC 275265 28 100.0 33 ............................ ACGTGTATGCCACGGTTAACCAAGCCCAACGCC 275326 28 100.0 32 ............................ ATATGAAATTGATATTAAATGCGAAATTCAAG 275386 28 100.0 32 ............................ TAATAGCACAGCAAAACGAGTAATGTTTGGGT 275446 28 100.0 32 ............................ ACCTTTCGCATCGCTATCAGATGAACTGCCCT 275506 28 100.0 32 ............................ GTTTCGGGTATTTCTTGTTCGCAAGAATTTTC 275566 28 100.0 32 ............................ GCTATGGCTTGATTGTGTTGTCTGTAAGCATC 275626 28 100.0 32 ............................ GCGACATCGTTACCTTATCGTTTAAAGAGAGG 275686 28 100.0 32 ............................ TTTTTATATCAACCATGGCGACGGCGGAGCTA 275746 28 100.0 32 ............................ TTTTGGCAGCAGTACCGGCCGCAAGATAATCT 275806 28 100.0 32 ............................ CTAGGTTTGTGGTTAAAGTTTAGAAATAACTT 275866 28 100.0 32 ............................ TTACAGCTGGACGCTTTCACGTATTGCGCAAA 275926 28 100.0 32 ............................ TTAGCGATAACGCACAGCAAGCCATTGAGCAA 275986 28 100.0 32 ............................ AGTCAGGCGGTCGGTTTTGTAAGACCAAAGGC 276046 28 100.0 32 ............................ TTAGGAATAACAATATCCCGACTTCTTAACTC 276106 28 100.0 32 ............................ TCACGAGGAGACAAATGTTTAGTAATCGGTTC 276166 28 100.0 33 ............................ TCTTCATATGATTCATAAAAAACATCAGAATAT 276227 28 100.0 32 ............................ AATCATTCTTGCAACAAATGCTAACGCAATTG 276287 28 100.0 32 ............................ CCTGTAAGTAAGCCAAAGCGACGATGAAATAA 276347 28 100.0 32 ............................ CAGTGCGTATCAATCAAAGGCTTGATATGAGC 276407 28 100.0 32 ............................ AAAACCAATTCACTGACATTGAGCTTTTGATG 276467 28 100.0 32 ............................ CGATCAGCGTCAGATGGTCGGTCAACGATATA 276527 28 100.0 32 ............................ ATTTAATGCGCTAATAGCCCCACCAATTGCAC 276587 28 100.0 32 ............................ AATGACGCGGTTGTTAGTGCACAAACCTTTAC 276647 28 100.0 32 ............................ TTGAACATCGTATGCAAGATTGCGCCGGTCAT 276707 28 100.0 31 ............................ TTATGAATACGGCATCATGTGCCAAGATACT 276766 28 100.0 32 ............................ ATCACGCTAGGCGGAACGTGGGTTTGGCTTGC 276826 28 100.0 32 ............................ ACACCGCCGTTTTCTTCTACGCTTTGCATGGC 276886 28 100.0 32 ............................ ATGCAGGCGGAATATCGCGCGCTGCTTGCACG 276946 28 100.0 32 ............................ TGCTCGTTTGCTGCTTTTAAATCACGCTCTAA 277006 28 100.0 32 ............................ AAAGCGCTACACCATGTCCACGCTGCTCAAAG 277066 28 100.0 32 ............................ CTTCAAAAAAGAGTAGTCAAAACAAAGAGAGG 277126 28 100.0 32 ............................ ATTTTATGCTACTATCAGTTGCGAATAACTTC 277186 28 100.0 32 ............................ ATCACTATCGCGTGTTTGCATCCCAGACAACA 277246 28 100.0 33 ............................ TAATGCGGAAGGGTTTTTCAGCGTGTCGGAAAT 277307 28 100.0 32 ............................ TTACAGTTGGATGCTTTCACGCATTGCGCAAA 277367 28 100.0 32 ............................ ATGCAGGCGGAATATCGCGCGCTGCTTGCACG 277427 28 100.0 32 ............................ TGCTCGTTTGCTGCTTTTAAATCACGCTCTAA 277487 28 100.0 32 ............................ TATCCCGCATAGCGAACAGCAGAGTATGCTAC 277547 28 100.0 32 ............................ ACAACGAATTCTGCATCATGATTAGAATCATC 277607 28 100.0 32 ............................ TGCTGAGAGAGTTATTGCAATCTGGCGAGCTA 277667 28 100.0 33 ............................ AAGCAGGGCTGTCGACAATAACTTCAGCATAAC 277728 28 100.0 32 ............................ CTGAGTAATGCTGATACAGACATGCCTGTTAA 277788 28 100.0 32 ............................ ACAAACAGACGATGCCAATGACTACTTTGAAC 277848 28 100.0 32 ............................ TCTTTTTGACATTCGTCAATTACGACAATTGA 277908 28 100.0 31 ............................ TTGAGCGTGCGTTATCCCCCTCGGTATGAAA 277967 28 100.0 32 ............................ TTGTCGCGCGCTCAAAGAATGCGAACGCCGGG 278027 28 100.0 32 ............................ TCATCTCTCTCGAATGCTATCATGTACACATC 278087 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 51 28 100.0 32 GTGAACCGTGGCATACACGGCTTAGAAA # Left flank : CTAGGCGTCCTCTTCGCCTACCTCGTCATCCTCCCCATCCTCTTTCATTTTCTAGGCAACATCCAACTAAATGGCGTTGCCTTCATGCCAGATATCACCAACTACCTCTCCATCAGCCTCACCCTATTTATCGCCTTTGGCATCGTCTTTGAAACCCCCATTGCCACCATTATTCTCGTCCTACTCGACATCATCAGCATTGAAACCCTCAAAGCCAAACGCCCCTACATCATCCTTGCCGCCTTCGTTATTGGCATGGTTCTAACCCCTCCAGACATTCTCTCACAAACCCTCCTCGCCCTTCCTCTTCTCATCTTATTTGAACTTGGACTATTGATCGCCGCCCGATTAAAAAAACCACCCTCCCAGACCCTTTAATTTAGCCATAAAAATTTAACCTTTAAAAACAAAAGATTAAAAACAGCGTAAAAATTTTGGGTCAAACCAACAAAACCGCCTTAACTCCTTGTAAATAAAATAAATCACGCGTACAATCTCTA # Right flank : AGCTTTAAAACATGCTGAGCAAAATAAGCATCTTCAACTTTTAAAGTTTAAAATCACAAAAAACCCACCAGAAGGTGGTTTTTTTAATCTATATTAATAGGTTAAGGAAATTATTTTACTGCGCTGTCAGCTTTTTTAATAATTGCTTCTGCTTCTTGTTTTAAAGTTGTTTCATTTTGATTAGCGTCAGTTGCCAGATTATTTTCAACAACGGCAGTATTTGCATTAGCAACTGCTGCATTTGCGCTATTTAAATGCGCGTCTGCCTGTGCACCAGTTACGGTTGTCTCTTTTTGTGCCATTTCTACGGCATGATCAAAACCTTTTTCTTTTGTATCAGTTTTGACTTCCGCCATGGCATGGTTTGTAGCGTTTTCAACTTTTGCTGCTGCCGTATCAACTTTAGAACCCACCTCTTCAGCCGTATTGCTCATTGTATTACCTGCATTTTCAAGCGCAGCATCGACTTTTCCACCAGCAGTTTCTAGCGCCTTACCTGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACCGTGGCATACACGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA //