Array 1 249004-247583 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQKU01000002.1 Neisseria lactamica strain M37079 M37079_CHA4301A17_cleaned_ctg_3078, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 249003 32 100.0 32 ................................ GCTCCCCCCCTGTTAGTCAGGGGGGGGCTTTC 248939 32 100.0 35 ................................ AAGCGTTATCTCACGGTAGACGAGGTACGGCTTCA 248872 32 100.0 34 ................................ TTAAAAGGCACGGTTGCCTCATTAAACAAATGTT 248806 32 100.0 35 ................................ TCCACGAATACACCGCCGCCGGGTTTAAGCCCAAA 248739 32 100.0 35 ................................ ATGTCGTCTTCCTGTTATGGGGTATGGCGGGGGCG 248672 32 100.0 34 ................................ TGTTTAAGGATTGAGCGTATGAAGTTATGGTGTC 248606 32 100.0 34 ................................ AAATAACTACACTGGTTATAACACGCAGTACAGC 248540 32 100.0 34 ................................ TATATGACAAGATTAATCCTGACTGGTATCATAC 248474 32 100.0 33 ................................ AAGCGTCGGCGTTGCCCTGCTCTCCGTCTATGT 248409 32 100.0 35 ................................ TGTACGGTCAGGTTTATATCGGCGGACAACAGGAA 248342 32 100.0 34 ................................ CGCGCATTCCCGCCTCTCGACCCGCACGCCGCCG 248276 32 100.0 35 ................................ AAAGACGACATTCAAGCTCAAGGTTACCAATACGA 248209 32 100.0 33 ................................ GAACTGACAGAACTCCGCCATCACGGGCATACC 248144 32 100.0 35 ................................ CATCCCGAAACCGCTTATAACGGCAGCAGAGAAAC 248077 32 96.9 34 ................A............... CCATGATTACAGCCAAAGAAGCTCGAGAACTCTC 248011 32 100.0 34 ................................ CAGGTCTTGACACCAACCTGCATAAACCACGGCA 247945 32 100.0 33 ................................ TTGATTCTCTGTTCGTTGCTTGGGGGTAATTGT 247880 32 100.0 35 ................................ ATACGTCAAGGCGGCAGGATGAGATTTGCCGTCTT 247813 32 100.0 34 ................................ TGAAACTCTACGTTTACGGTTTCAGACGGAAGAT 247747 32 96.9 36 ..........T..................... CAGCGCAAGATGTTAAAATCAGAAATCGCCGGACAG 247679 32 100.0 33 ................................ AAGGCAGAAATTGATTTTGATTTCGTCACCAAC 247614 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 22 32 99.7 34 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : CATGGAGAGGCAAGAAAATGCTGATGTTGATAACTTATGATATTTCGTTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCACGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCGGTCGATATATTTAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATCTGGGTTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGCGAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGCT # Right flank : GGCGCGGACGACATCCGTTTCCTGCGCGAGTAGGGTAAAGGACAATCTAAATTCCCCCGGCAGCTTAAAATCTTGCCGGGTCTGCACAAAAATGCCGTCTGAACAGGTTTCAGACGGCATTTTGTTTCAATCGGGAATATCTTTGTTAAAAACGGCTTGATATTATCTGCACATATTAATATAATGATAATTATTATTAATCAAATAGGGAAAATGTAGGGATGTGTAAACTGAATTATTTCAGCATTGCCTTGCTGCCGTTGATGCTGGCAGCCTGTGGCGGTAATTTCGGCGTGCAGCCTGTTGCCAAACCAACGCCGACCGCTCAAACCCCGTCAGATTCCAAACCGTCCAAACCTGAGGACGTTCCCACTCCGCCTCCTGCCAAACCTTCAGTAGAAACCACGCCGGTCAACCGGCCCGCCGTCGGTGCGGCAATGCGGCTGTTGAGGCGGAATACTGCTTTTCATCGTAAAGATGGCACGGCAATTCCCGATAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 175957-175591 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQKU01000004.1 Neisseria lactamica strain M37079 M37079_CHA4301A17_cleaned_ctg_3082, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 175956 36 100.0 30 .................................... AACAAACCTTTATTTCACAAGCAGTTCGAT 175890 36 100.0 30 .................................... TCTTTTTTTTCTTCTTCGGGCATCTCTCCG 175824 36 100.0 30 .................................... CATCGCCGGCGGAAAAATCAAATTAAGCCT 175758 36 100.0 30 .................................... ATTTGCAAGCTAACCTGACCACAATCAAAA 175692 36 100.0 30 .................................... AGAGATAGTGAATTGCATGGTACAACTCCC 175626 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TTTATTTTCAATTTTATGTTGAACTTTAAAGCAGTTTCGCAGTGCTGAAATTCCGCCCGAGCCCTTAAACCATACACGGCAGATGCCGTTCACAAAGGCGATGTGCAACTTTGCCCGAAACAGTCCGCCTTTACCCTTACAAGGACGAACAGCAAAAGACGGAACAGCCCGTACAGTCCGCGAAAGCGGAAAAACCCCAAGTTTTAGCAATGGATGCGGCAAAATAGAAAACCGCCCTTAATCGGGCGGTTTTGGCGGTCTATTGACTTAAAAGCACAATCAAGGCTAGAATAACCCCAGCATCAATCGTAACAGTCAATTGCAAAGTACCTACGCTAATAGAGATTTGCATTTTGATGTTTCCTGTGAAGTTTCAAAACTTGGCAGGAATGCAAAAATCCCCTTGTTCTCAGCTTGGGGATTTTTGTTTGTCCCCGCCGATTTTTTAAAATCCGCGCCTCTCGCGCCTGAACCTATCTCATAAAGTTCCTTATATATTA # Right flank : ACCCCAACGGGAAATCCTTATTATGTAAGGGTTTCCCGTTTTATTTGTTCTGAAAAAATGGGCTTAAAATAATAATAGTTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGCAGGTTTGCACACAGCCTGTTGTGGTGTTTTTGCAACGAATCTCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //