Array 1 218001-217765 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTR010000001.1 Bifidobacterium gallicum isolate MGYG-HGUT-01471, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================== ================== 218000 26 88.5 26 ...................G.A.C.. AGATAGGGGCAAAACGTACCGCTTCT 217948 26 92.3 27 .......G.........C........ GGATTTCGAGCAAAAAGTAGCGTCAAT 217895 26 96.2 27 .................C........ AAACGAGCCAAAATCCGTAGCGCCAAC 217842 26 100.0 26 .......................... AAATCCAACCCATCCGTACCGCATTC 217790 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =========================== ================== 5 26 95.4 27 GTACCACCGTGGTACAAACACGATAC # Left flank : CAAGCCAAACAGCACGGCGACGTGCCGATTGGGGCGTGCGTGCTCGACGCGGGCGGCCGTGTGATCGGGCGCGGACACAACATGCGCGAACGCAATCTCGATCCGTTGGCGCACGCCGAGATTGAAGCGATGCGTGAGGCCGCGGCGACGCTCGGAAGCTGGAACCTCGAAGATTGCACGCTCGTGGTCACGCTCGAACCGTGCCCGATGTGCGCGGGCGCTTGCCTGCAAACGCATGTGGGGCGCATCGTGTTCGGTGCGTGGGATGCCAAACTCGGTGCCTGCGGGTCGGTCTGGGACCTGCCGCGTGACCCCCATATTGGCGCGCACCCCGAAGTCTACGGCGGCATCCGCGAATCCGAATGCGCCCAACTGCTCACCGCCTTCTTCCGCCTGCGCGGGTGATGCGGGGGCGGGGCGAATTGGAGGTGGGGTGAAGCGGAAAATCTGCCGTTTTGTCGACTTGTCGTGCGGTTGGGCGCTCCACCTGTATCGTTTCT # Right flank : GGATTTCGAGCCGTTTATGAGTGCAAGGCAACGCGCGGGGCGCCGGCTGCTATCAGCTCACCAAAACGTGGCGTGAGCGGCACGGGGCAAACTGGCAGATAGGGCAAGCTGGCGGCTGCCGCAAGCCCAACAAGTGCGGAATTATTGGATTACGCCGGCGTTGGGGTCGGTGACGGTGCCCGCGTCGCCCGTGTTGCCTGCGTCACCACCGGGAGCGACCTGTTGGACTGGTTGCTGCGGCAGCTGAGCCTGCTGGTTCTGCAGCGCTTGCTGGTTCTGCAGCGCTTGCTGATTCTGCAACGCCTGCTGTTGGGCCAATGCTTGTTGCTGGGCCAATGCCTGCTGTTGCGCGGCAGCGGCGGCTGCGGCGGCGTTCGCGTTGGCGAGGTCGGTGATTGAGGTTTGCACAGCATCATTGGCCTTGGTCAGCGCATCTTTGGCTTGTTTGACCTGATCAGCCGTCAGTTCCTCAGAACCGGCAAGCTTCTTGGCATCGTCGA # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.20, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACCACCGTGGTACAAACACGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 5674-5340 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTR010000009.1 Bifidobacterium gallicum isolate MGYG-HGUT-01471, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5673 29 100.0 32 ............................. GCGCCAATCAACTGTTATCTTGACGATTTCAG 5612 29 96.6 32 ............................T GCCACGTTCAGCCTGCGCACCGCGACGGGTGA 5551 29 100.0 32 ............................. AAACGCTTCGTGCAGCCCGCCGAGCCCGTGAA 5490 29 100.0 33 ............................. GCCGGCCACGCGGCGGTCATGTGCGGCGCGGAC 5428 29 100.0 31 ............................. AACCACAGGTAGCGGAAACCCGAACCGTGCA 5368 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 99.4 32 GGTAGCCCCGCACACGCGGGGATGATTCC # Left flank : GCGGTGTTTGGCTATCGCGCCGCAATGCGCGCAACGTTTCGTGGTGTCGGATGGATTGACGGGTCGAAGGATGCGGCCGTGTTTGAGCGCTTGCCATTCAAGCGCCTGCTTGGTAGCAGCTATCGCACCGTCGGCGGCTTTCCTTGCCATGGTCGTTTTCGACAGGAACTTCGGTTTGAAGTCCTCGATGGCGATATTGTCATGGTCCTGCACAATGTGGCGCGCCCACTTGTTCGCCGTGTCCTGCCGTTGGCGTTGGACACGGCGTTGGATTTCAGCGGCGCGACGCTTGTTCTTCAGGTACCTGTTGGAGGGTTTCTTGCCTTTCGGGCGTCGTTCCTTGGCCATGCGTCGTTGCAGTCGGGCAAGTTCGAGGTGCGCTTTCCTGCCGTATTCGGGATGGGGCAGGTCGTATGCGCCGGTTTCGTCCACGATGCCGTTTCCGTCGATGGTCGCGCAGGTCATCAGCGTGCTTACACGAGTAGCAGCGACCCCCGTGA # Right flank : TACCCCGCCATCCGAGAAACACGCATGCGGGCGCTCGAACAACTCGAACGCGAAGCGGCGAAAGCGGACCGCGTCGTAGAAGCCATCCTCAGCCAAGACGACGCCTTCAACGTGGAAACCCAGCGTCAACACCAGCGACACAAGCGCATCGCCTACGCGGCCCACGAAATCGCCGACAAATACAACTTCCTGCTCACCGACACGGAACAAGCCGAACAGGCCGACCTGCTCCTGCACTACAACATGCTCGACGACTGGAAGCATTGGCTCAGCTGCAAAACCGGCACCCACCCCAGCGCCCAGCGCGTCAAGGACGCGCTCAGCTGGCGCAGCAACGACAGCGTCATGCAGCAGGCAGCAAAGAACGCCCTGAAAACCCTCGACGGCATCACGGAACCCAGCAAAGCCATCATCATGCTCGCCGCAGGGCTTGCGGAGAGTGCACTGTCATGCTTATTTGGCCAGGAATGCTTCGACTTTCGCACCATCCGCGAAGCCTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTAGCCCCGCACACGCGGGGATGATTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 2 17998-16197 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTR010000009.1 Bifidobacterium gallicum isolate MGYG-HGUT-01471, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17997 29 96.6 32 ............................T AGTGTCAGCTTCATCCCCCTGAGAGGCCTCAC 17936 29 100.0 32 ............................. CGCTGCCCCACGATGTCCCAGGAGTGTGCACT 17875 29 96.6 32 ............................T CGACGGCCGCGCCGTCGACGTAGATGCCTTCC 17814 29 100.0 32 ............................. CGGGGCAGTCCGGCGCGCTTGTTCATGGGAAC 17753 29 96.6 32 ............................G ACAGCCACACGTCCGGCGTGTCCCCATCATAG 17692 29 96.6 32 ............................T CAGGGGGCTGAAAATAGTGTCAGCTTGCATTC 17631 29 100.0 32 ............................. ACGCCGATCGTGCCCAGCCCAGGCTCATCCTC 17570 29 100.0 32 ............................. AGCCAGAGCCCTGTAGGCGCGACTGTGCACGG 17509 29 96.6 32 ............................T CGTGCACGTCTTGCTCGCTTCGCTCCACCCGC 17448 29 96.6 32 ............................T CCTGTACTGCTGGGATGGTCCGTCGCGTCGTA 17387 29 100.0 32 ............................. ACGACGCTCGTCGCGCAACTGCACGCCGTAGG 17326 29 100.0 32 ............................. ATGCGCTCGAACTGCGCGTGGACGCTGGTGCC 17265 29 100.0 32 ............................. GCGTCGCAGTCCTCCAGATAATGCTTTTTCGC 17204 29 100.0 32 ............................. CAAGACCCGCCGCGTCTGGCAGCGCACACTCG 17143 29 100.0 32 ............................. GCCGGTGGCTCATCGCGTTCGACGTAGCCCCA 17082 29 100.0 32 ............................. TCAGGTTTGGTCGCGCCAATATTTTCAGGCAA 17021 29 96.6 32 ............................T GTTTCATGCGCAAAACTACGCTGTTTTTTCGT 16960 29 100.0 33 ............................. CGGGACGTGACCGCAATGTGCACGTGGACATCG 16898 29 100.0 32 ............................. CAAAACCGCGGAATGTTGCGCATAAGTCAAAC 16837 29 100.0 32 ............................. ACGTGAGAGACGTGCTCGCCATCGTACTCATG 16776 29 96.6 32 ............................T GCGTGGCCTTCGACCTCGATCAGTGGTTCACG 16715 29 100.0 33 ............................. CTGAGAATCACCGCCAAGGCCACCTACATCGAC 16653 29 100.0 32 ............................. AGTTCGGCATCAATGGCGTGCAGGCCATACTC 16592 29 100.0 32 ............................. GGAGCCGCGTCGTGGCTCGATGTGAGCATCCG 16531 29 100.0 32 ............................. AGCCGATGACGGAGCCGGCACAATTCGCGGCC 16470 29 96.6 32 ............................T CGCGATCCACGCGCTTGGGGGGTATGCTCTGT 16409 29 100.0 32 ............................. AGGTGTACGAAGTCACCGACAGCGTGAACCAG 16348 29 96.6 32 ............................T AATCGGGTGAACCCTCAGCTTCTGTGGTGTCG 16287 29 100.0 33 ............................. AAAGACTTCGCTTTCCAATGGCAAGAAGCGGAA 16225 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.8 32 GTGCTCCCCGCAAGCGCGGGGATGATCCC # Left flank : ATGGTCGTGATAGTGCTGACAGCCTGCCCTCCAGGACTACGCGGAGACTTGACACGCTGGCTGCTGGAAATATCTCCAGGAGTATTTGTAGGACACGTCAGCGCCCGCGTGCGAGACAAACTCTGGGAACGCATTGAAGAACTCGTTCGGGAAGGACGCGCCATCATGGTATACAGCGCCCGCAATGAACAGCACCTCGCGTTCCGAACTCTACGCAGTTCTTGGACTCCTGAAGATGAGGATGGGCTTACTTTGGTGCGGCGCCCTTTGGAAAACCGTGACAACAGTTTCTCCGGATCCCGTAAAGATGGATGGAGCAAAGCGTCACGTTATCATCGCGCTCGCAAGTTTGGAGGGCGGTGATGTTGCGTTGCTGGGGGTTTTCCATTCTATTTTGATTTCTGCCTATGCCGCATGAGTTTGCGTGCATCATATACAGACTAAAGGAAAACGATGATCAGCAGGATGTGGTATGGTTGGAACCACTGGGATTTTTTAGG # Right flank : TGTTAAAGTACACCTATGCGTCATCTAGTAGCAGGCATCGTAGCTCATGTGGATGCGGGCAAGACCACGCTATCCGAAGCGTTGCTGTATCGTGCGGGAGCCGTGCGCAAGCTTGGACGCGTGGACCATGGGGACGCGTTCCTGGACACCGACGCGATTGAGCGCGAGCGCGGTATCACGATTTTTACGGAGCCGGCTGTGTTGCAATTGGATGGCACTGCGGCTACCACAGAAATACACAATAATAAAGCCCAAACCGACCCCTCCGCACCGCAACATCCGCACGATCCTTTCCAAGACGACCCGCTGCAAGTGACATTGCTCGACACTCCCGGCCACACGGATTTCTCGGCGGAAATGGAGCGCGCGTTGACGGCGCTTGACTATGCAGTGCTCGTTGTCAGCGCGACGGACGGTATTCAGGGCCATACGGAAACGTTGTGGCGGCTGCTCAAGCGTTACGACGTTCCGACGTTCATTTTCGTCAACAAAATTGATAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //