Array 1 1461363-1461663 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVLN01000001.1 Roseobacter sp. HKCCD8191 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1461363 36 100.0 30 .................................... CGCGCCTTTTGGCAAGGGCGGCTTCGACGC 1461429 36 100.0 31 .................................... CCGATCTCTTCAACCGGATGTCCGGCCAGGA 1461496 36 100.0 30 .................................... CCATAACAAGCTGCGCCCCTATCCGGGCGA 1461562 36 100.0 30 .................................... ACTCTGGCCAATCTTCTGGCCTCCAGCCGT 1461628 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 100.0 30 GTTGCGGCTGGACCTCGAATTCTGAATGGCTAAACT # Left flank : TATCGGGCGCGAGCGCGGCGATCAAATGATCGTTGGGGTTTGGTGGCTCGCCGATGAACGTACCCTTGCCCTGACGTCGCCAAACCAGCCCTTCGACCTCCAACGCATCTAGTGCCCGGCGCACGGCCCGGCGGCTGACATTGAAGCGCCCAGATAGCTCCCGTTCTGTCGGAAGTTTTCCGTCTTTCTCGACCGCGCCACGACGGATCAACTCGCGAATCTTGGCGCGAGCGAGCGACGCGTTGTCTTGCATGATCTGAGCTGTATCGCGCACGGCTTTCTCCAGAACCGGGACCAAAGTGGATTTGGTCCGAACCAATTTTACTTTGGTTCGCGTGCCGCAAAGTTGTCAAGCGATTCCCATCCCGGGGCTAAGCCGGGCCGTAGATCGGCGACGATGGCGGTGGGCCGAAGGGGCGAGAGACGGGATGTCGACTAGCTGTTCGGCATCCGAGTCTGTGCGTCCGGTTGCTGGGCCATGCGAGGGGATGCAGGCAACG # Right flank : TCGATCGCCGTGTATCTTCTTGTTTTTACAAGAGGATACACGGTTTGTTGTTACGCAAATCCGCTCAATTATCTTCAAAACATCACCAATTGCTCTGGATTCTTGCGCGCCGCGCGTCGCCCTTGATCTGAGAAATGAATGATATCTCGATACTGACGATCCGTGAAATTGAGGATCTGAATGTCGCCCATCGCAGGGAGGTTCCGTTCGATACGGGTCACCCGGGTCTGAAACGCCTCCTTGCCATTCACAAACCGGGCATAGACCGAAAACTGGCTCCGCTCGAAGCCCCCGTCGAGCAGGAAGTTGCGGAAATCCGTGGCCGCTTTGCGCTGCGGCTTGGTGTCGGTGGGCAGGTCGAACATCACAAGTATCCACATGAGGCGGTATCCTGAAAGAATGGCGGGCTGAAAGGTCATGCACCCAACCCCGCGAGCGTCAGGGTATCGGGCGGTCGCGGCAGGGCGAGAGAGAGCTTGCCGGTCTCGAAGCTTTGCCCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCTCGAATTCTGAATGGCTAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGCGGCTGGACCTCGAATTCTGAACAGCTAAACT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 160971-161336 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVLN01000003.1 Roseobacter sp. HKCCD8191 NODE_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 160971 36 100.0 30 .................................... CAGCTCTATCAGTGCATCAGCTTTGGTCAT 161037 36 100.0 30 .................................... CGCAGCCAATACCGGATGGTTCGGGCGCTG 161103 36 100.0 30 .................................... TCGTCGTTGGACCATCCGCAAAAGTAATAG 161169 36 97.2 30 ......C............................. GCGACCGCATCCTGCCCGTAATACTTGTTC 161235 36 97.2 30 ......C............................. TGTCGGCCCCTGTCTTACTAGGCGACAGAC 161301 36 97.2 0 .................C.................. | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 98.6 30 AGTTTAGTCATTCAGAATTCGAGGTCCAGCCGCAAC # Left flank : ATGTATACACCCGGAACGGCAATCCGATGATCATCGACGTGCCTGACGAGCCCGGCGCCTATGTGCTGCGCTACTTCCTCGGGCAAGATCGGGTCGTGATCGCCGAACACCCGCTCGTCGTGCAGTAACGCCGATCAAATGCGGGGCGATCTGACGAAGGCCGCCTCGCAAGTCTGACCACAGTCCGCCCGCGCGCCCGCGACCACGGCGCTGTCTCCTTCCTCGCCTTTCAAGACGGCACGGAACTGCGTGGCAAGAGCGGACGATGCTTGAGACCTGATCAGGTTCAACCTTACGGCGCCGTTCTCCGATGTGCCGCCGCCAGATACGTCATTTCGCATCTCCACGGTCTCGTGATATGATCTCCCGGTCAGACCCAAGCCGTCGGGCCGCCCGCAAAAATCTAGAGAAACTGGGGATGTTTTGAGCCAAATGCGCCGGAATACCACACATAAAGACCGGGAATACCCTTGCAAAAACAAGAGCTTCCCCGGTGATCC # Right flank : CGATCCGAAACCACGTCAATCCTAAGCGCAGACGATCAGATATGGATCACCCGGTCATACGCGTCGAGCACGCTTTCATGCATCATCTCGCTCAAGGTCGGATGCGGGAAGACGGCCTCCATCAGGTCTTCCTCCGTGGTCTCTAGTTGACGGCCCACTACATAGCCTTGGATCAGTTCGGTCACCTCCGCACCGATCATATGAGCGCCGAGAAGTTCCCCCGTCTTGGCGTCAAAAACCGTTTTGATCATGCCCTCTTGTTCACCAAGTGCAATTGCTTTGCCGTTGCCAATGAAGGGGAAGCGGCCGACCTTGACGTCATAGCCGAGCTCCTTCGCCTTGGCCTCGGAATAGCCCACGCTGGCCACCTGCGGGTGGCAATAGGTGCAGCCCGCGATGCTTTCGGGTTTCACCGGATGGACCTTGTTTTTGCCCGCGATCAGCTCGGCGACCATCACGCCTTCATGGGAGGCTTTGTGGGCCAACCAAGGGGCACCCGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTAGTCATTCAGAATTCGAGGTCCAGCCGCAAC # Alternate repeat : AGTTTACTCATTCAGAATTCGAGGTCCAGCCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //