Array 1 63912-68437 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCFA01000008.1 Streptococcus ruminantium strain DTK284, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 63912 36 100.0 30 .................................... AATTTTGCTGATAGTGACTTTATCTACAAA 63978 36 100.0 30 .................................... ATGGCTATGCCTAGGGTTCCTACTGGGTGA 64044 36 100.0 30 .................................... AACTAAAGCTAACTACGAACGTGAATTTTA 64110 36 100.0 29 .................................... TTGTGATAAGAGCTTTTCTGAGCCGTTCA 64175 36 100.0 30 .................................... TAACTGGTACAGCACCAACCAATTCAACCT 64241 36 100.0 30 .................................... TGTTTGTAGCGTTAACAAACGCAAAGGTAC 64307 36 100.0 30 .................................... AAATAAAGATCACCGTAACTATTTGAGTTC 64373 36 100.0 29 .................................... TCTTGTCCGCTTTCTTAGTGTCTTGCTTT 64438 36 100.0 30 .................................... CTGCCATTTCTGATCCGGAAATTTATGTTG 64504 36 100.0 30 .................................... TTTTGCTGAGTTGGAAGCGATGGAGATGGG 64570 36 100.0 30 .................................... TTCTTTGGCTGTTGTTTTAAGCGGTACACA 64636 36 100.0 29 .................................... TTCTTCAAAATACATGGCATATATACCAC 64701 36 100.0 30 .................................... ACGGACCTTCCAAATCTGGGATTGTCGCAC 64767 36 100.0 30 .................................... CCGGAAACTCTAAAACCATATACGGGTTGT 64833 36 100.0 30 .................................... CTTCTCGGCTGCTTTCACCGTACTCGACCT 64899 36 100.0 30 .................................... TATCTGCCACAAAGAATGCGTTTTCGTTCT 64965 36 100.0 30 .................................... ACGAATCAAGCTGATTCGCATTTTGCAGGA 65031 36 100.0 30 .................................... TCAAAGGTCAAGCTAAGAAAAGCGATTCTA 65097 36 100.0 30 .................................... CTATTTCTGGTAAAGCGATAGAAATATGGA 65163 36 100.0 30 .................................... AAAGATACTAACTGGAACAAGACAAAATCC 65229 36 100.0 30 .................................... CTTAAAAGCAAAAGCAACGCCGGATTGTTG 65295 36 100.0 30 .................................... CTTGTACTGTTCGGTCTTGCCATCAAGGAC 65361 36 100.0 30 .................................... TTTCCTTCTGCGATTTGACAATAGCACCTT 65427 36 100.0 30 .................................... CTCTGCTGCGATTGATGAGCTGTACGAGTA 65493 36 100.0 29 .................................... TAATTGAAAAAATGGCTTAGTAGATTGTG 65558 36 100.0 29 .................................... GAACTAGCTGGCACTGCCATGCGTTTCAA 65623 36 100.0 30 .................................... CAGGAGCGAGCAGGAGTGGCACGCAGTCTA 65689 36 100.0 30 .................................... AGATACACTTCATCTTGAATTAGTTCATCA 65755 36 100.0 30 .................................... TTGAGTTTAAGCATTTAGAGGGCAAAATAG 65821 36 100.0 30 .................................... CAGGTCCACTGAAGTAGGGCGGGTCTACAA 65887 36 100.0 30 .................................... TACCAGAAGAGGCACCGCCATAGTGTATTT 65953 36 100.0 30 .................................... TCACGTTGGTTGGAGTCGCGCTTAGATTGC 66019 36 100.0 30 .................................... CAGCCTCCATCAATGGTCCACCGAACTCTA 66085 36 100.0 30 .................................... CTTATCTAGTCAAATGTTTTAAAATTATAT 66151 36 100.0 30 .................................... TTCTTTAACTTCATATGCTGACACCATCAG 66217 36 100.0 30 .................................... TTTATTTTTAGAATACTAATTTGATATATC 66283 36 97.2 30 ..................................G. TGATTTTACTTGAAATTATTAAATTTTTAG 66349 36 100.0 30 .................................... AAGACATTGAGTATATAGTTGAGGGGTTTG 66415 36 100.0 30 .................................... AAATGAGGACATAGAGAAAAGACCTACTAA 66481 36 100.0 30 .................................... CGATGAAAGATTATTTGATTCACGAGAGCG 66547 36 100.0 30 .................................... TTTAACAACGTTAGTAATGCAGTCGGAAAT 66613 36 100.0 30 .................................... TTTGCTCATATTTTTCCTTTCTTAAATTTG 66679 36 100.0 30 .................................... ATTCACGCATCACTTCCATGCAGTCCGAAT 66745 36 100.0 30 .................................... TTTTCTTTAGGCTCTTTCTTCAACAACCTA 66811 36 100.0 30 .................................... GATAAGGGAAGCTCTTAAAGAAGGGGTATT 66877 36 100.0 30 .................................... CCTTCGCTTGGATTTGATGGCTCGTCTTCT 66943 36 100.0 30 .................................... AAAAAAGAACAACCGATTCATCCTAGCTTT 67009 36 100.0 28 .................................... TAAAGCAATAGCAAAGCAATTGAAAGGA 67073 36 100.0 30 .................................... GTGATGGTTTAGTTGCATTAAGTGCCATTG 67139 36 100.0 30 .................................... CGATACTTCCGTTTACCTTGGCATTAGCCT 67205 36 100.0 30 .................................... CTGAAGCTTGGCTGGAGGTTAATTCTGAAG 67271 36 100.0 30 .................................... CAGCTGCATTAGCAAAAGTTACTGATAAGG 67337 36 100.0 30 .................................... AAGGTCAAACTTTATCTAAAGAAAATCAGT 67403 36 100.0 30 .................................... TGGATTAGTTCCATTTAGTTCTCCTTTTTT 67469 36 100.0 30 .................................... CCGTTCTAAATCGTCCAATTTGTACCGATG 67535 36 100.0 30 .................................... AACTAGGCTTGATATTGGATGGTACACTAG 67601 36 100.0 30 .................................... TCTAAGGATCTCTTGTGTCCACGATAAGCT 67667 36 100.0 30 .................................... ACCACAACTTTACGTTCGTTGGACTACTCC 67733 36 100.0 30 .................................... AGACCCCTATCAGTTTGTATGATTGGAAGA 67799 36 100.0 30 .................................... GTTACCTTAGACAAGGAAACTAACAGAAAG 67865 36 100.0 30 .................................... TCTAAAGTATATTCTAAAATTAAAGGAGCT 67931 36 100.0 30 .................................... GAAGAGCAATACCACCGAAAACACTTGCCG 67997 36 100.0 30 .................................... TTTAGAGCTTGATCCATTTCAGTCAGCTGT 68063 36 100.0 30 .................................... CTAGGTGCTGTAATTGATAAAAGTGAACTA 68129 36 86.1 37 .................GC....A...T.......T GCTTGACAATATGATTAGATAATGATATTGTTCTTGT 68202 36 75.0 30 ...C...A.T...T.G.....G.....AG....G.. AACCAAAGCTAACTACAAACGTGAATTTTA GG [68208] 68270 36 97.2 30 ...................................T CGTTGTCAGCTGTAATCGTGATATTCGATT 68336 36 100.0 30 .................................... CGTATTATTATATTTATCGTTTGAAACACC 68402 36 86.1 0 ...............................CCCCT | ========== ====== ====== ====== ==================================== ===================================== ================== 69 36 99.2 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AAATATGGATGATTATTTGGGCTATTCTTCTTTTACAAGAATCGCTCAACACTTAGAAGTGCTCTGTCGAAAATATCCATATTTTCATGTTATGATATTTCCTTCTCAAGAGGGATATCTATACTTAAATGAAAGCACGATTGAAACGGTGAATATTTTAGCAGATCAAATTGAGCATTATCCAGCACTTGAATTTCTATATGAGCGCTATAAGGTCTCTTATCCTTCCAATAATCCATTAGACAAACAAGAGTTTTTGACTTCTTTGAGAAAAGTTAGCTCCTATTTGTTTTGCTCTGAGATAAGCGAAGTGGTTAGTCTGTCATATAGAGATCTACTGACGTTAAAGATCATAAATACCCTTTATCAGTATGATACAAAGCCAAAATTTGAGAAATATTCCTTGTCTGTTTTGGAAGAAAATTATCTTAATACCTAAAGTTGACAAGTATTTTGATAGGGATTATACTTGGAGTAAGAGAGTATAAAAATCATTTGAG # Right flank : TCTAAGGTCATTGATTTCTTGACCTTGTTTTTGTCTTCTTAAAATGAAGACAAACTTTTTGTTTTGCCCTGAAATGTAATTTTAAAAGGCTTTTGAATGAAAGAAGAAGCGATTTATTTCTCCGTTGAAGATCGCTTTTTTAATGTCGCGATTTCTTTGAAACAACAACTTTAAATTTTTAGTGATCCTGTTTTGCTTTTTCTATGATAAAGTAATGAAACTGTTATGCCGTTGTAGTGAGTGTTTTTCAAAATTCTTAGAAAATGATAGAATGTTACCATGACTATATAGATAATAAAATACTTTTGTCTCATAAGGAAAACTATAACAACTTCTCAATACTTTGCGGTCTTTTCCAGTTGTTCTCAGAAAATGCAATAAGTGCCTATAGGATGATCGCTTCTATTTGGCTTATCACTATAGAAAGAATATCATGATCTTATTCGTAGTGTAAAAAAAGAAGTAAACCTTTCTATCTTGTAATGTAAGATAATTTGTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //