Array 1 810899-810335 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015285.1 Azospirillum humicireducens strain SgZ-5 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 810898 36 97.2 30 ...........C........................ GAACGGGTCCAGGATGGACGCGCCAGCGCC 810832 36 100.0 29 .................................... CTTGCGCAGCTCGCATACGGTGGCCAGTT 810767 36 100.0 30 .................................... AGCGCCTGTCGCTGGACGAAGCGGTCGATA 810701 36 100.0 30 .................................... CCGGCTAATTTGGAGGCCCCCGTTAAGCTC 810635 36 100.0 30 .................................... CTCCGCCTTCTCCGCCACCTGCGAAGAAGG 810569 36 100.0 30 .................................... GCGGCTCGGCTTGGCGCGGGACGACAAAAC 810503 36 100.0 30 .................................... TCGCCAGCGACACAAGCGAACGGTCGGAGA 810437 36 100.0 31 .................................... TTCCGGCCCCACCCGATTTCCCACCGGTAGG 810370 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 99.7 30 GTTGCGGCTGGACCCCGATCCCCCAGCGGCTACAAT # Left flank : ATCGGTAATAAAAGTGGCGAAAGGTGCGAGTCGCCTTCTTTCCCCATTTCAACGCCAACGCTCCGCCGGACTCTCCGGGTCTGTGATGCCGCAGCATCAAGGCGGGTACGGTCACTGTCATCGACACGGGTGAACGCCAGTGCAAGAGCCTTGCAGAATGGTTGGGACACCCAGGCGTGGTTTTCATTGTCATCGGACAATGCAACGCAAGTGGCGCGCGAGACTGAAAGCACTCCACAAATTTACGCGTGTCGGCGCAGAAAAATTCACCACATATTCACTTCACATTCTGAAATGATGCTGAGGGGTTGAATTGGCCTGCAGCATGATATGCGGCATCCCCTAGACCAGCGGCGCCGACTGGCTCAGCAGCAGGCGCCGGCCCGGGTTCTCTTCGATCCAACTCTTGGGGAAGACCTTCAGGGCCTGCTGGCCGGCGCGCGGGTCGAGGATGGCGCCGTGGGCCTGGGTGCCCTCCATGGCACCGGTTGCGCCCAGCT # Right flank : CGGACCCCGGATAACCCTCTGAAGTAAAAAGGGTTATCCGGGTTTCTTTTCTGAAGACCTTCCATCGGATGCCCATCAAAACAGCTTGAACTGTTCGTACTTCGCGGCGGGTTCCTGTTTCGTGCGCGTTTCGAAACACACCATCGTCTGGTATTGACGGTCGGTGAAGGTCAGGATCTGCACCTTTCCCCGCTTCGGCAGGTTGGATCTGATCCGTCCGATTCGCGCCTCGACCTGCGGAGTGCCGGCACAGAAGCGCATATAGACGCTGAATTGCGACATCTCGAATCCCTCATCCAACAGAAAATTGCGAAACCGAGTCGCCGCTTTCTGGTCGGTTTTGGTCACGGTTGGCAGATCAAACATCACCATCATCCACATGAGCCGATACGCGCTGAGTGGCATGCGCGCCCTCCTTGCCTGACGGTCCACGAGCGATTTCGAGGGGAAGCGGAGACAGCGGAAGATCGAGAACCTGGCGCTCGCCAGAAAGAACCTGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCCCGATCCCCCAGCGGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGCGGCTGGACCCCGATCCCCCAGCGGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 461841-463325 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028903.1 Azospirillum humicireducens strain SgZ-5 plasmid pYZ2 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 461841 32 100.0 34 ................................ GTCACCACGCCAGCGGCACCGGCAACGGCCAGCC 461907 32 100.0 34 ................................ CTGGCCGATGCGAAGAAGCCGGAGCGTGGCGAGA 461973 32 100.0 33 ................................ ATGTGCGTGTCCTTCAGGAGAGAGGGGCGGTCA 462038 32 100.0 35 ................................ TGGTACAAAGGAGGTGCCCCGGCGGACGCCACATC 462105 32 100.0 34 ................................ GACCTATGGTATTCGCACGTCAAAGGAGATGGCG 462171 32 100.0 34 ................................ TCCACTCCTTGCGGGGGTGGGTTGCCGCGGGGCT 462237 32 100.0 34 ................................ CGCTATTCAGCCAGCCAATAACATGGGCGATGGA 462303 32 100.0 34 ................................ ATCGCTGGCGCGGTAGCGGTAGGTATTGCCCGCC 462369 32 100.0 35 ................................ GTCTGCGGTCCGGCGGTGCGGCGGGTGAACTCACC 462436 32 100.0 34 ................................ TACCACCTACGGGTTCAGGCGTCCAAGCCCATAG 462502 32 100.0 35 ................................ ATCGCCTGCACAAGAGCGCGGGCAGCGGCGCGCAC 462569 32 100.0 34 ................................ TACCACCTACGGGTTCAGGCGTCCAAGCCCATAG 462635 32 100.0 34 ................................ GCCGTGCGGGGGCCAACCACGCCGTCGGCCTTAA 462701 32 100.0 34 ................................ CCTGCCCGATGGACAATCGACGGCAGGAAGAAGG 462767 32 100.0 33 ................................ GTTTACGAACTGCACGAACAACCAGAAGCACGG 462832 32 100.0 34 ................................ ACCGTTGCAGTCATGTCAAATACATCGCCTGTCG 462898 32 100.0 33 ................................ CAAAAACTGCACGCTGACATTAAGCCCGGCGGC 462963 32 100.0 34 ................................ TTCATCGCCGTCGAGAGATCCTTGATCACCCCGG 463029 32 100.0 34 ................................ TGCGCCCGGCTGGTCGCGCAGCGCCTGGAAGATG 463095 32 100.0 35 ................................ GTACAGCCACAGCGGCGGGGCGGTATGCGTCTCGA 463162 32 100.0 34 ................................ TTGTCCAGCTTGTCGCTAAGCTGGACGATCTGCG 463228 32 100.0 34 ................................ TCGCAGCCGCGCACTATCCGGCGCCCACGCCGAA 463294 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 23 32 100.0 34 GTCGCCCCCCGCGCGGGGGCGTGGATCGAAAC # Left flank : CGACGGCTACCCGCCCTTTCTTTGGAAATGACCGGCCATGCTGATGCTGATCACCTATGACGTGAACACCCAGGACGCGGCCGGTCGCCGCCGATTGCGCCGGGTTGCGAAGGCATGCCGGGATTTCGGACAGCGGGTTCAGTTTTCCGTGTTCGAATGTGAGGTCGATCCGGCACAATGGACTGCGCTGCGTGCCCGTCTGCTCGGTGAAATCGACCAGAGCATAGACAGCCTGCGCTTCTACCATCTTGGCGCCAGTGCGAGCCGCCGCATTGAACATGTCGGGGCCAAGCCCACGCTGGACCTCGACGGGACGCTGGTGTTCTGAGCGAGCGCGAACCCGAAGCGGACAGGAAACTCCTGGGAGGTTCGCCGTGGAATGCTTTCAATGGGTTAGCTTCAATGGCATAGTGATCGACGCCCGACAGAACGGCGCGCGCGAACTGATTCGCGCTCGACCAGAGATTTTGGGTGCTTGGACAAGTAGATACTGATTGGTC # Right flank : CTTCTTACTCACGCCAAGCCCCTATTTCTACTGTGTCATAAAGTTCGCAATTGCAGGNGCGGCAGGGAATCGGGCTGGAGGGCTTGTCGGAAGAAGTTATGCAGGGATCGATCAGTCCTATGCCTCCGGCAGTGTGACAGGAGCCACCAACGTCGGCGGCTTCATCGGCGAGCATACTCAAGGCACCATCACCAACTCCTATTGGGACACGCAGACCAGCGGACAGCAGAACGGCGTCGGCAACAAGGTGGTGACCGGCCTGACCGGGTTGACCACCGCCGAGGCGCGTCAGGCATCCTCCTATGTCGGCTGGGATTTCACCAAGGACTGGTACCAGTCCGGGGACATGCGGCCCATCGGCCGGTGGGAGGCGGCGAAGGCCGGAAGCGACGGCATCGCAGCCATCACCAACCTCCACCAGCTCCAGCTGATCGATGCGAACCCGACAGGCTCCTACCGGCTCGACGCCGACATCGACGCCCAGGCTACGTCGGGCGCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCGCGCGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCCACGCGGGGGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.30,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 464117-465464 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028903.1 Azospirillum humicireducens strain SgZ-5 plasmid pYZ2 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 464117 32 100.0 34 ................................ AGCGGCACCTTGACGTACCTGTCAACATCCTCTG 464183 32 100.0 34 ................................ ACTGGCAGGTATTTCGTTGCCGCCGATGCCGGCC 464249 32 100.0 34 ................................ ACCTTGCCGATCACCAGGGTTGTCCACTCGATGA 464315 32 100.0 33 ................................ ACGCTGTCGGCCACCGGCAAGAGCTTCGCCGCC 464380 32 100.0 33 ................................ TCCCCGCGGTGCCGGGCCTGACCTTCGACGTTG 464445 32 100.0 33 ................................ AGATGGTCATCGACACCACGGCCGGCGCCAAGC 464510 32 100.0 33 ................................ ACGCCTGCCATCTTCCAAACACCCTCGATCTTC 464575 32 100.0 33 ................................ ATGGCAGACGCGGGCTAACTCAGCGGCGGCTTC 464640 32 100.0 34 ................................ AGCGTCAGCGCGCCGCCAGAAGCGGACGGAGCGA 464706 32 100.0 33 ................................ AGTCAACCCGTCGAGATGCCGCGGGACGGCTAT 464771 32 100.0 34 ................................ CCGCCCCACCGGTCATTCGCCGCGCCCCACGTCC 464837 32 100.0 35 ................................ AAATCCGAACTCGTCGATATACTGGCGGCCGACAA 464904 32 100.0 34 ................................ TCGCTGGCGCGGTAGCGGTAGGTATTGCCCGCCC 464970 32 100.0 34 ................................ TTCCACTCGGGGCGCTCCATGCGGGCGATCCGGC 465036 32 100.0 34 ................................ ATTGCAGTGTTGAAGGGCCAGTACCCACCCCCAC 465102 32 100.0 34 ................................ TGCATGATGTTCGTCAGGTTGGTCATCGTCGCCT 465168 32 100.0 34 ................................ ATTGAAGACGTTCGCCTCGTCGCCAAGCATTTGC 465234 32 100.0 34 ................................ AGCATGGCCTTGTCAACCTCGGACTTGACCTTGG 465300 32 96.9 35 ..........A..................... CTGTTCGAGCGCCATGCCGGCGCGTCGGGCGAGGG 465367 32 93.8 34 .........TA..................... ACAGGAGCCAAGCGCGGCACCGCAGGCGCAGACG 465433 32 93.8 0 .........TA..................... | ========== ====== ====== ====== ================================ =================================== ================== 21 32 99.3 34 GTCGCCCCCCGCGCGGGGGCGTGGATCGAAAC # Left flank : GCATCCTCCTATGTCGGCTGGGATTTCACCAAGGACTGGTACCAGTCCGGGGACATGCGGCCCATCGGCCGGTGGGAGGCGGCGAAGGCCGGAAGCGACGGCATCGCAGCCATCACCAACCTCCACCAGCTCCAGCTGATCGATGCGAACCCGACAGGCTCCTACCGGCTCGACGCCGACATCGACGCCCAGGCTACGTCGGGCGCCGATGCCGCCGGCATCTGGGGGACGGGCGGCTTCGCCCCGCTGGCGGGCGCCGGCTTCACCGGCAGCTTCGACGGGCGCGGCCATCTGATCCGCGGGCTGACGATCAACCGGCCGGCGAGCGACGATGTCGGCCTGTTCGGCAAGATCGGCACCGGCGGCATGGTGAGCAATGTCGGCCTCGATGCGACCGGCGCCGTCACCGGCGGGAACCGGGTCGGCGCCATCGCCGGGACCAACGGCGGCACCATCCTCCAGTCCTTCTCTATGACACAGTAGAACTATTCGGTTTGGTT # Right flank : CGCGAACGGCATTCGCGCCCGGGCCCGCAACCCCGGTCAACCAAGCTGACAGGACGGTCAACTCCGCCGGATCGCTCCGCATTGTGACGCCTGCGGCGTCAGCGAACGCATCCAGCGATGAAGGACGCGCTCGATCGCCGCGGCGTCCTTCCGGGAGGTCCATCGCACATACCCGGCCGTTTCCCGTGCTTCGCCGGGCGACATGCCGTAATTGGTCCGGAAGGCCCGGATGAACGAGGCTTCGGAGCCGAAACCCCAGTGGTAGGCGATGTCGACGATCCGCGGGCGGTCCCGCCGGGGGGTCACCAGATCATCCAGTGCCCGCGCCAGCCGCCGGTCCCGCACATGTTTCGCCACCCCGCCCAGCGGTTCGAACAGCCGATAGAGAGCCGAGCGCGACAGGCCGAAGCTGTCGCAGATGAGGGCGGTCCCGAGTTCGGGAGCTTCGAGCTTCATCTCGATGAACTCCTTGATTCGGTCGAGCAGCGCCCCCCGCGGTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCGCGCGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCCACGCGGGGGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.30,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //