Array 1 32-913 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUQK01000113.1 Salmonella enterica subsp. enterica serovar Tennessee str. 3133 SEET3133_215, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 93 29 100.0 32 ............................. CCCCCACCAACCCCGCACCGCGCTGGCTAAAA 154 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 215 29 100.0 32 ............................. AACTGGTGATGTGTGAGCCAAAATTACGTGAC 276 29 100.0 32 ............................. AGGCGATCGACGCGGAACTGGTGCGCGGTGAA 337 29 100.0 32 ............................. TGGATGTGTACGCCGCCTCGCCGGATGAGGCG 398 29 100.0 32 ............................. ATCGGCATTTCTCCAATCATGCAGCATGCGCA 459 29 100.0 32 ............................. TTGTTGATTTTGTCGAAGGTCTTGAGCAGTGG 520 29 100.0 32 ............................. ACAGGTAGATCATTTATTAATCAGAATTAACA 581 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 642 29 100.0 32 ............................. GTCTGTCTTTATTCCGTGATAGCGCCACTCAA 703 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 764 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 825 29 100.0 31 ............................. GCGCGCCATTGCTGAGGGTAAACCGCGATTA 885 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATCAGGAAATCAAGGAGAAGCGGGTGCGTAG # Right flank : CCAGCTCAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [25.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 87104-85609 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUQK01000154.1 Salmonella enterica subsp. enterica serovar Tennessee str. 3133 SEET3133_259, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 87103 29 100.0 31 ............................. TCCGTCTCCGCCAACGCCTTAGCCCATCCAG 87043 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT A,G [87016,87022] 86980 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 86919 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 86858 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 86797 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 86736 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 86675 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 86614 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 86553 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 86492 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 86431 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 86370 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 86309 29 100.0 31 ............................. GGGCGTCACCATTTTTGAATTTATCAGCCGC 86249 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 86188 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 86127 29 100.0 32 ............................. CATCCCCGCGCAGCGCTAACGTCCAGGCATAT 86066 29 100.0 32 ............................. GATGCCCGGGGAAAACTAGATACCACCGCAAA 86005 29 100.0 32 ............................. CCATTTTTGCCGCCATATGCAGCTCGACGACA 85944 29 100.0 32 ............................. GGCGAACCCGCAACGGCACCGCAGCCAATGAC 85883 29 100.0 32 ............................. GGAGTAAAGGGGAATTTTTGGACATGTCGCCA 85822 29 100.0 32 ............................. ATCAGCTGCTCGCTGTAGGACATTTCTGTGAT 85761 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 85699 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 85638 29 96.6 0 ............T................ | A [85611] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCGCTAAT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 33-183 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUQK01000191.1 Salmonella enterica subsp. enterica serovar Tennessee str. 3133 SEET3133_322, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 33 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 94 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 155 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TACACCAAATGGGGGCCAGCAAAGAAAATGCTG # Right flank : ATTCGACGCTCAGGCCGTTCTCTTTTAACC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5433-5705 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUQK01000230.1 Salmonella enterica subsp. enterica serovar Tennessee str. 3133 SEET3133_68, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5433 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 5494 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 5555 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 5616 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 5677 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 184-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUQK01000042.1 Salmonella enterica subsp. enterica serovar Tennessee str. 3133 SEET3133_137, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 183 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 122 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 61 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GGCAGCTATCGATGAGATGAATAACGCGATTTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17528-16809 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUQK01000042.1 Salmonella enterica subsp. enterica serovar Tennessee str. 3133 SEET3133_137, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17527 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT C [17518] 17465 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 17404 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 17343 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 17282 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 17221 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 17157 26 89.7 0 ..........................--- - Deletion [17132] 17137 25 75.9 32 ----AAA...................... CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 17080 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 17019 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 16958 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 16897 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 16836 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 96.6 29 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGCCCGTTTGTCTCAACCATGACCA # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //