Array 1 465-192 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKVI01000119.1 Escherichia coli strain MOD1-EC5812 MOD1-EC5812_119_length_2731_cov_72, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 464 29 100.0 32 ............................. CTGTGGTTCTGCTCGAATAACAAAGTGCCATC 403 29 100.0 32 ............................. CGTGCCGTGCTGGTGGGCGGCACAGAACTGGA 342 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 281 29 96.6 32 ............T................ TATGGGAAACAGTAGCAACTGGCACACTGGCA 220 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACACTGACCGATGATAAACCGCGAGTCATTGCGCTGCAGCCGATTAGCCAAAAGGAAGATGCTACTCGTTTATGTATCGATACGTGCATTGCGCGCAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTTGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : ACCATATAACCCGTAATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTAATAAGCAACATATCCACGTAACCCCTCATGTTTAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAATCCATTAAGAAATTTTAATATA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 58926-57371 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKVI01000075.1 Escherichia coli strain MOD1-EC5812 MOD1-EC5812_75_length_84712_cov_126, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 58925 29 100.0 32 ............................. AACTCTTCCAGCATCCGAGACGCGTTATGCCG 58864 29 100.0 32 ............................. GACTTTGTCGGGGCGTCCGTGCGTCATGATGA 58803 29 100.0 32 ............................. CGAGGCATTGATAAAATTCATCGGCGTTATTA 58742 29 100.0 32 ............................. CGTACAGTATAACCTCATCCGGGAGCGTCTCA 58681 29 100.0 32 ............................. TATCAGCACCATGTGCCGTGCCGTTTAACAAC 58620 29 100.0 32 ............................. ATTTTGGTGGCGGGGGTGACTGGGGGAATACT 58559 29 100.0 32 ............................. CCTGAAAAAATATAACGCCACGTTACCGGCGA 58498 29 100.0 32 ............................. GCGCGGTCGCTGCAATTATGGGCGTTGGCCGC 58437 29 100.0 32 ............................. GTTTATCCTCATACGCATAGGCGTTAGAAAGC 58376 29 100.0 32 ............................. ATATCCGTAATCATTTTGGGAAAGTAGTAACA 58315 29 100.0 32 ............................. GCAGCAAAAGCCATCGACGGTCAAGAAAATCC 58254 29 100.0 32 ............................. GTGGTCAATCTACTCGTAGCTGAGGCGATCAA 58193 29 100.0 32 ............................. CCCAATACCCCTGGGTAAGTACCTGCCAGATG 58132 29 100.0 32 ............................. GCGCAGGTTGGATATATGAGTGCCGCAAACTC 58071 29 100.0 32 ............................. CGCGGGCATCTCTACTGGCACTGCTGCGAAGA 58010 29 100.0 32 ............................. CCTCATTCAGTAATTATTACACCAAAACAGAG 57949 29 100.0 32 ............................. CTGTGGTTCTGCTCGAATAACAAAGTGCCATC 57888 29 100.0 32 ............................. ATTTAATACCAGACGCAGAGTGCCACACAGGT 57827 29 100.0 32 ............................. TACAATTACATGTGCAACGTTGAGGCTTGGGC 57766 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 57705 29 100.0 33 ............................. CTATTTTTGCGGATGAATACGAGCGCCGTTGGC 57643 29 100.0 32 ............................. AATCCAGACAATTGCTGACTTTCGGCGGCAGT 57582 29 100.0 32 ............................. AACTGACAGGCGATATTACATACAAACCATCA 57521 29 100.0 32 ............................. TTCAGTGAGCCATAAAACCGCAGCTTATTTGC 57460 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 57399 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCACCAGCCATACCTGAACCTAAAACGCTGGGTGATAGCGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCTGCGCTTACGTGGACGGCTCGCAATCTGGTTACTGGAAGTGCGTGCCGGTGTTTATGTTGGTGATACATCAAAACGTATTCGGGAAATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGACGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCGCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCTTTATTCCCAAGATTCCAGTTTGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCGGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //