Array 1 109684-108372 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBO01000003.1 Salmonella enterica subsp. enterica serovar Worthington strain 06-0153 NODE_3_length_557801_cov_3.60578, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 109683 29 100.0 32 ............................. CCCCTCGCCCTCGATCTGGCGTTAGTTACTGG 109622 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGTCCGTATT 109561 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 109500 29 100.0 32 ............................. TTTACAGGTCATTTTGCTGTCCTCATTTTTGG 109439 29 100.0 32 ............................. TACTGGATATCAACCTGCCTGAGTTAAAGACC 109378 29 100.0 32 ............................. CCTTGTGTGCAATGCAACAAAGGCGAACTGGC 109317 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC 109256 29 100.0 32 ............................. GCGTGGAGTAATGGGCGGCTAAAACTGCCGGA 109195 29 100.0 32 ............................. ACCGCAGGTGATATTGACACCGGAGCAGGGGG 109134 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG 109073 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA 109012 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 108951 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 108890 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 108829 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 108768 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 108707 29 100.0 32 ............................. CAATAGGGAAAATGGCATATGAGGGCGCGCAA 108646 29 100.0 32 ............................. TAAAACGATATTCCCGGATAAAAACGGAAAGC 108585 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 108524 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 108462 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 108401 29 96.6 0 A............................ | A [108374] ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAGAATAAAAGCGCTCTTTCCTTTAATTACTTTGCCTGAAGCCTGGGATGAAGATGAGGGTATCGACCAATTTCAGCAACTTTCCTGGTTTATTTCCGCTGCGGTTGTACTGGCTGACTGGACTGGTTCTGCCAGCCGTTATTTTCCGCGTACTGCGGAAAAAATGCCTGTTGATATCTACTGGCAGCAAGCTCTCGCTAAAGCACAAACTGCCATTACGCTATTTCCCTCAGCGGCGAATGTGTCTGCCTTTACGGGCATAGAAACGCTTTTCCCTTTTATTCAGCATCCCACACCGTTACAACAAAAGGCGCTTGAGCTGGATATCAACGTGGATGGCGCCCAACTCTTTATTCTTGAAGATGTCACTGGAGCCGGAAAAACAAAGGCGGCGCTCATATTAGCTCATCGACTGATGGCGGCAGGTAAAGCGCAGGGACTCTATTTTGGACTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGTATGGCGAAC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 119425-118418 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBO01000003.1 Salmonella enterica subsp. enterica serovar Worthington strain 06-0153 NODE_3_length_557801_cov_3.60578, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 119424 29 96.6 32 ............................A ATGCCGCCACTTCCATTTCGTTCAAATGCCGC 119363 29 100.0 32 ............................. AGAGCAGCTTGCTCACTACCGGGGCAGAAGGG 119302 29 100.0 32 ............................. TATTTGGACAATCAGGTCGAGGTTCAGTATGA 119241 29 100.0 33 ............................. TCACAAATGCGAGGAGTCAGCCCAATGAGCAAC 119179 29 100.0 33 ............................. ACGGGACCGATATTCTGCTGCCCGGGGGCACGC 119117 29 100.0 32 ............................. GAGTTCAGTCACTTGAATGATGCGCGGGAATA 119056 29 100.0 32 ............................. GTCGTCTGGCATATGTGCGTAGCCACCTCGCA 118995 29 100.0 32 ............................. CGGATGATTCGCGCATGACTTGGGCTACTGCG 118934 29 100.0 32 ............................. GGATATCGAACTCTTACCGCCGACGATATTGC 118873 29 100.0 32 ............................. AGAGATTGATTAAATGAACAGTAACAAACTAA 118812 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 118751 29 96.6 33 ..........A.................. TCTGGTGCTGGCGGTTTACTGGGGAGTATTGGC 118689 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 118628 29 93.1 32 .........C..T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 118567 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 118506 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 118445 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //