Array 1 1448725-1449363 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP013074.1 Dehalococcoides mccartyi strain CG3 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
   1448725	    29	 100.0	    32	.............................	TGATATATGCTAGGGTAGGTCTGTTAATGCCT 	
   1448786	    29	 100.0	    32	.............................	TTATGTGTACTCAGGAAGAAATTGATGCCATT 	
   1448847	    29	 100.0	    32	.............................	CGTGCGTGTCGGCAGTATAGATTTTGCTGTTA 	
   1448908	    29	 100.0	    32	.............................	ATTGTCTAGGGTCAAATCTCTAGCGTGTAATT 	
   1448969	    29	 100.0	    32	.............................	GCATCAAGTTCCTCCTGAATTCTTAAAATACT 	
   1449030	    29	 100.0	    32	.............................	ATAACGCTCTCCATGTCGGGAACTACCGCAAC 	
   1449091	    29	 100.0	    33	.............................	GTTAGTAGGTGGTTTTTTACCACGAGTAAAGAA	
   1449153	    29	 100.0	    31	.............................	GCGTTCCCCCTTCGTTACTGACTTGGTACAA  	
   1449213	    29	 100.0	    32	.............................	AGGATAGATAATCTAGATATAACGCCTAGTCA 	
   1449274	    29	 100.0	    32	.............................	GTGTATTGTATAGTGCAGAACAAGACAACTAA 	
   1449335	    29	  93.1	     0	..........................A.A	|                                	
==========	======	======	======	=============================	=================================	==================
        11	    29	  99.4	    32	GTATTCCCCACGCGTGTGGGGGTGAACCG	                                 	       

# Left flank :   CTATCCCTGTGGCATTCAAAATTGCGGCAGCCAATCCAGAAGACCTTGAACGTCAGGTAAGAATGGAATGCCGGGAAGCTTTCTATAAATACAAACTTCTTGAAAGGTTGCTGCCGGATATTGCGGAGGTACTTGGTGTTAGTGATGATATTGGAGAAGGTCCCGACGAGTTTGAGGGGCGCATTGTCACGCTGGCTGTTGGAACCGAAGACGGGAGTTTTTCTTGGGAACCCGAGCGCCAGGGTGAGGGATGAACTCTGGGACAAGGCGATAAAGAAAACAAAAGCAAGCGGTGTTATCCTACAAATTTGGACAGACCAGAACCCTCAGGGGTTTTCTTCCCGCCAATATGGTGAGAGGGAACGAATGTTTATTGATTTTGAGGGGCTATCACTGGTAAAAATAGACAAGAATATTAGCACTACCAAAACGCAAAATTCTGATACTACAAACATCTAATCAACTATGACCCATTTTCTGCTTAGCTTTATTCTTTTAAG
# Right flank :  ATTCGCTCTCCAATCTTTAATAAAGCTAATGACATAGTTTGGCCTTTCCGGGCAAGCCACGTGAACCGTTAATAGCGAATAGCAGTTAAGAATGATATTGAATATAATCTTATAATTGCCAAGCATATCTACTTTCAGGCCTCTTAGTAGAACTGACAAATCTCAGCCCCTATAAACAACCAACACCAAGTGGCAGACCCTTAGTTGACATACCTTAATCAGGGGGGTATCATTAAGGAAATGAGCATATGCTCATTTCCTTAACTCTGACTTTGCCGGAATTAGATTGAAACTAAGTTTTAAGAGGCTAGTAATAAGTTGCTATCAGTAAATAAAGAACTTTGCAATGGCTGCGGCGTTTGCCAGAAACTCTGCCCTCAAGAAGCCATAAACATTCAAGATGGAATAGCCAATATATATCAGGATATATGCACCCAGTGTAATTTATGCCTGAAGAAATGTCCCAAAGGTGCAATCTCAGAACAAACAAACACTAATAA

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTATTCCCCACGCGTGTGGGGGTGAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGGTCCCCACGCGTGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-11.50,-10.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.55,0.37   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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