Array 1 4192-3762 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLCZ01000299.1 Paenibacillus polymyxa strain 3A-25AI NODE_299_length_4197_cov_3.00676, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================== ================== 4191 26 100.0 41 .......................... TTTCGGCAGCGGTAAAGCTCCGATAATTGTTTTGCGTCGCA 4124 26 100.0 42 .......................... TATTTCATTGCTCCCGTAACCTGTGCTGACTGTATAGTCGCA 4056 26 100.0 41 .......................... GCAAGAGGAGCTCGACCAGGTAATCGCGGATCGTAGTCGCA 3989 26 100.0 41 .......................... CCTATACCATATGGATTCGTTAGTTTTATTATATCGTCGCA 3922 26 100.0 42 .......................... CTGTAAGATTAATGTCTGACCATGTCATGAATGAAAGTCGAA 3854 26 100.0 40 .......................... TACATCCCCAGCGGCCTGAGCGTCCTTGAGCAGCGTCGCA 3788 26 76.9 0 ....A.A........AC....A...T | C [3769] ========== ====== ====== ====== ========================== ========================================== ================== 7 26 96.7 41 CTCTGTGTGAGTGCGTGGATTGAAAG # Left flank : GTCGC # Right flank : CGCGAGCAATTGCAGATTTTATGACTACTTTACGTAGTTACTCTTTTTAAGGGAGTATGACGTATTCTCGCAAAGTATCGATACAAATCTTATTTAACCTGGCTCCCTTTTAAATCAGGAGAGCCTTTTTTGTCGTGATTTTTATAGTCAGAAAAACGAGTTTGATATGGCGACAGGTGATATTAATTCCAATCCAATAGATGTTTCCAACTACGGGATTTATGTTAACAATTATGAGCAAGGAACTACTTCTCTTCCAGAAAACATAGGAGCTCGCAACTCGACCAGAGCTGAAAAGGCATAGGCGCTTGTAGTTCATGCCAAGAAGGGGCCTGATATCAAGTTAAAGTACCGGCCAGACGTAATAAAGATACATTAAATATGAAGCTAGGAAAGCACAAGTTAGTATTCAGCCGTGTTTATTCACCAAGGATAAGAAAATGGTCTTATTTTCACAGATTACAAATAGAAAATCTTTTGCATAATATATTCCAATAGAA # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGTGTGAGTGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: R [matched CCCTGTGTGGGTGCGTGGATTGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2406-2039 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLCZ01000127.1 Paenibacillus polymyxa strain 3A-25AI NODE_127_length_9855_cov_2.76143, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2405 32 100.0 36 ................................ TCCAGGTCAACGGTGAAGAAATCACCCTCTGTGTTA 2337 32 100.0 34 ................................ AGGTCCATCGACTGGTTCCTCTTTGATTTCCTCA 2271 32 100.0 35 ................................ TATGAGTTAGGGGAGGCCATCGTCCCGGACGCAGA 2204 32 100.0 34 ................................ AGTCACAATGATACAACCAGCAGTAACATTCATC 2138 32 96.9 36 ...................T............ TTTTGTCATGGGTTGATCATCCTCACTAATAATATT 2070 32 90.6 0 ........T..............A.......G | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 97.9 35 GTCGCTCCCTATGTAGGAGCGTGGATTGAAAC # Left flank : GGATAAGGCTTTGTAACGCGTGCTGTCGCTCCTTATGTAGGAGCGTGGATTGAAAGGTATATAGGGGTATAGGGTAAGAGGCTGTAGCTCCCTTTATGGGAGCGTGGATTGAAACGGCTTGAGCTTCCACGCCTTCATTTCCTCTTTCTGGGTCGCTCCCTATATGAGAGTGTGGATTGAAACAGACGCATGGTGTAATAACCCCAAGTAGGCTGAAGAAGTCGCTCCCAGTATTGAAGTGTGAAATTTAAACTCAGCTCGCTATACTCACATCCGTAAGTTCGTTGCTTCTCACAGGGTGATGTACAATAAACAATTTAACCTTTAATTTGGTGCGAACCCTAAGCGCACATGAAATCCCCAGAACATTCGCACCTCGCGCCAGACAAGGAATTCAATGATTTTGGGGTAAGATTTTTAACATTTATTGATGAGTTGAAAAGAGATTCGTGAAAAAGCGTTTACAAATCCTTGCTGGATAAGGCTTTGTAACGTGTGCT # Right flank : TATGTATTTCTCATACCGCACATATAGCACAGCTATGACGTTCCTCATTTTTCATTGAAATACACAAAAAGGTTTGCCCTAGTACTAGGCAAGCCTTCTTGTGTGCTGGTTGTAATATGGAAATAGGTTCAAAATGAACTAACATTTTTATAGACGTGGAACTGTTCGGAACACCACTCTAAAAAGTGAAACATAAAAAAGAAGCCCGTTTTGAAAACAGACTCCTTAATGTACTCCCACGTTAATATGCACAAACCACACTATTCTGTTTCTTCAAACTGCATTAACACGGAAATGTCTTTGATCTCCAGAGCATGAGCGATCTTTTCAAGCATAAGCAAGTTTACTTCTTGTCTCCCATTTTTACAAAGCTGTGAGATTCTTGCTTGATTAACACCTGATTTTTCCGAAAGTTGCATTTGCGTCATATTGCGCTCTTTTAACACTTCTTTAAGCCTTATATTTAATTTTAGCAAGAAAAAGAAACCTCCTAAAAACTC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTATGTAGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 1 257-21 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLCZ01000896.1 Paenibacillus polymyxa strain 3A-25AI NODE_896_length_485_cov_2.52093, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 256 32 100.0 35 ................................ ATAGAGTCGATGACGTTGGCAGCCTAAAGGACATT 189 32 100.0 35 ................................ AAGGAGACGTTTGGTGTCAAAGCTCTGAATACAGG 122 32 100.0 38 ................................ AGTTAGGAGGGAAGTAACATGAGTAAATTGACGCCAAA 52 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 4 32 100.0 36 GTCGCACTCTGTGTGAGTGCGTGGATTGAAAG # Left flank : TGATTGACCTGCTCTTCAAAAATGGAGTGACCATAGGAAAGATGATTCGGTGCGAACCCCAAGCGCACATAAAAATCCCGGGTCCTTCGCACCTCGAAAATTGTCGGAAAGTATCGAATCGGCTATCTATCCGCAAAAGTCAATAGTTGATTCAAGCTTATTGGGCATCATTTTTTGCGACAATGCGTGGAAATGATATCCTATGGATATGAATTACTGCATTTTCGC # Right flank : GCGTTACAAAATCCTCGGTCC # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTGTGAGTGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //