Array 1 8993-8092 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCPQ010000027.1 Longicatena sp. 210702-DFI.1.213 NOBNKION_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================================================================= ================== 8992 33 100.0 33 ................................. ACCTGTACGCTCATCTGTTAACTCAATTTTGTG 8926 33 100.0 35 ................................. CATCATTGGCAAGTATTAAGCACTTCCCAATTTGC 8858 33 100.0 35 ................................. ATTTCAAACTTGGTTAGGTCAAATCAAATTTAAAG 8790 33 100.0 34 ................................. AAATGACGCTGTATTTATCGATTATTATACGCGT 8723 33 100.0 34 ................................. TCATACCATTCGGGTAATGTCTTTGGTTTTGATA 8656 33 100.0 34 ................................. CCGACGTGAAGACAATTTTTCATCGCATGAATCG 8589 33 100.0 34 ................................. TTTTATAGTGGTTGATTGTTGGTTAGTTGTTGGT 8522 33 100.0 34 ................................. CATCTGTCTAAATACATATAAGTCAGTTGCTATC 8455 33 100.0 36 ................................. TTTTTGTTTAATGATTTAAAGATAACTTCGATAATA 8386 33 100.0 34 ................................. ATGAATATATGGTAGGTGATAAATATGAACAACT 8319 33 100.0 32 ................................. GGTAATTTTGGAGATATTGAAATCTACGACCA 8254 33 97.0 97 ............................C.... AATTTTAATTGTTCATACGTGTTGATCTGCAGCTGTCGTACCTCTTGTACGAGAGTTGAAATAAATTGTATATGTATACTGCGATCTCCCCGGTTCC 8124 33 93.9 0 ............A.......T............ | ========== ====== ====== ====== ================================= ================================================================================================= ================== 13 33 99.3 39 GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT # Left flank : AGGTGATTTAGATGAATATGCACCATTTTTGTGGAAGTGATGATTATGATGGTATTAATAACATATGATGTGAATACAGAGGATAAAGCTGGGAGGAAACGTTTAAGGAAGGTAGCTAAGCATTGTTTGAATTATGGATTGCGAGTACAAAATTCAGTGTTTGAATGCAATGTAAATCAAAAAGAATATGTTGAATTGCAGCATGTATTGTCTACTGAAATCGATGAAAGTAAAGACAGCCTACGCTTCTATCTTTTAGGGAATAATTATAAAAATAAGATTATTCATATTGGAGCAAAACCAACATTCGATGTTACGGAACCTTTGATTTTTTAAATGTTGGTGCGAATGTGAAGCTAACATAAATTTCCTAGGACATTCGCACCTATTTTTGATTATTTTAATTGGATTTTTATGCTTTTATTTGATAGAAATTTAATTTTTATGTTAATTTAATGCAAATATTGTTACTAATATCGAGATTAAAAGCAATATTTGCT # Right flank : TATTGATTTTAGATGAAAAATTATTGAGGATAATCGGTCGTACTTCTTACGAGAAATTCAGATGTCTATATGTAAGTATTTACAAATAAAAAAGGCAAATCCTCTTTGGATTTACCTTCCAAATAACGTATTAATCTGCCTTTTCTGTAACATCCTTCATCTTCTGCAAACCAAAGATAATAAGTCCACCAACTACAAACCATAAAATATCAAAAGAACTAAAACTCAATGGTGCTTTTGGTGTTGACAATGTTTGTGGTCCCATGATGATGGCATAAAAAGAACCAATCATCATACCGATTATCAGAAATATCATAATCGAACGATGTTTATCTAAAGCCCATTTGATAACCCGCACTACTGAAACAATTCCCGCTAAGATCCCCAATGCAAAGACAATCAGGATTGGCAGATAATCTAAGTTAAAGCTAATCACCGCTTTAACAGCACTTATGATAGGAACATAAAGTCCGAAAATCAATAATAAGGTAGAACCACTG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.44, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 21699-21076 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCPQ010000027.1 Longicatena sp. 210702-DFI.1.213 NOBNKION_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 21698 33 100.0 32 ................................. GCAAGCAATAGATTGGAGTGATGAAGATGAAT 21633 33 100.0 33 ................................. GCTCATAACCCTGTCGACGAGTCCTGAATGCCA 21567 33 97.0 37 ......................C.......... ATCGCTAGAGTTTGTTCCACCTTTTATCTTTAGTCCT 21497 33 100.0 34 ................................. GATTTAACGAACATCATAAACCAAATGAACAAGT 21430 33 100.0 33 ................................. GATACCTTTCTGCAGCAGGTAGATGATCTACAG 21364 33 100.0 35 ................................. GACCATTTTTTGAAATAATCTTCCAGTACGCTGAT 21296 33 100.0 34 ................................. GAAGTAAATAAAGCAGATGAAGTTATCAGCGAAG 21229 31 75.8 31 ....C.--....G.A..AAG............. GATAAAGTATTCGATAGAGCACTCTATGAGA 21167 33 60.6 26 AA..CCG.AT.CGC...A.GT............ TGAATCGTACATAATTATTTGTCAAA Deletion [21109] 21108 33 84.8 0 ..GTCG.A......................... | ========== ====== ====== ====== ================================= ===================================== ================== 10 33 91.8 33 GTCGTACCTCTTATGAGGTACGTGAGTTGAAAT # Left flank : ATATGAACACGATAAAAATGATGTGCATGATGTGATGCTGTTGTGTGAAACATTTCAAATAGCAATACCAGATGAATATAAGGAAAAGTAAAATTTCAGTTTTGTGTTGAATCTCTAAGCAAAATAGCTTATAATTTGACATGCTACATATAGTTATTATCCACAGTTATCGAGTAGGTGTTATCAATGCCGATAACAAAATGATAACATTAGCTCGTATAGGCAGGATAATATGGATATATCAAATAATCAAAAGAACGAGAAACATTACAGAGAATAATTCCTAAACAAAAAGCGTTAGTCTTTGTAGAGTTTGAATAAATTTAACTATTTAATAAGTTGGTGCGAATGGGAAGCATACATAAAAAAGCTAAGAGATTCGCACCAATTTTTTTGTATCATATGTTGTGATTTATAGAAAATAATTGAAGAAGTATTAAGAAAGTATATAAAATTTATACATTTCTTCTTTAAATGGTATGTTTTACATGAAGATTTGC # Right flank : GTTGCATTTGGATTCATGTAAGTTATAACATTTATACAAATGTATAATTTCCTCTTCATTAAGATTTTTAAGGATTAGTAACACCATCGGCATGCACATGAATCCAAACACACCAAATAATTTACCACCTGCATACATACATAACAGCATTAACAAAGGATGCAGTCCTAACTGCTTTCCCATTAATTTAGGTTCTACTATATTACGTATTAAAGTAATAATTAAATATAATATTAATAATCCTATGGCTAGTTTATGTTGTCCTTGAACATAAGAAAACAGAATCCATGGTATCATAATACCGCCGGTACCTAATATTGGAAGTACATCAAAAATCGTTATGCCTAAGGCTATTAGCCAGGCTTTTTTTATATCTAAAATAGAAAGACCTATGACTAATTCAAAGAATGTTAATAGCATTAATTTGATTGTAGCTATAAACATGTTTAAAAAGGTATGAGTGGCAAAATAACGTATAGATAATATGATTTTTTGTGTTT # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTCTTATGAGGTACGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: R [matched GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //