Array 1 53591-53323 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWHC010000013.1 Staphylococcus singaporensis strain SS251 contig00013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53590 29 100.0 32 ............................. TAGGAAAATTAGCGATAGCTAATTTTTGCGAA 53529 29 96.6 29 .......A..................... GAGAAGCTGATGGAAAATCAGCTTACAAT 53471 29 100.0 32 ............................. AAGAAAAATTAGCAAAAGATAATTTTTACGAT 53410 27 89.7 32 ..............C.--........... AAGAAAAATTAGCAAAAGATAATTTTTACGAT 53351 29 93.1 0 ................C...A........ | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 AATGTGCCAGTTGGGGTGGGGCCCCAACA # Left flank : TTAATTCCTGTAGTTTCAAGTAATAAAAAGACAGTTGGTGTAATCAATCGACAAGATGTTTTAAAGTCTATGCAATTACTAGGAAGACAACCACAAATGGGCGAAACAATTAATGACCAAATTGCTAAGTATATAACAATGAATCAAGAAGGAATTACAGTTGAAGTTTCACCACTTTTAATAAACCATTATGGAACGGTAAGTAAAGCTGCATTTGTAAGTATTATAGAAGAAACAATACAATATGAAATGCGTAAATACAAAAAAGGTAACGTAATGATTGAGAACCTAAATATTGTTTATATAAAAACAGTACCAATAGAATCACATATCACCGTTGATTTCGGAATACTAGACGTAGGAAGAAACTTCGCCAAAATAGAAGTAACCATGCATAGCCACAACGATAAAGTAGCTAGCGCCCTCGTCATATGCCAAATGTTCGAAGAAGTGTAGGCCGGGGCCCCAACAAAGAAGCTGATGGAAAATCAGCTTACGAA # Right flank : TAGAAGCTAGCTATGTAAGAAGTAAAATAGAAGACCAATAAGAATAATATTTATAATAATAAAAGTAATGAAAATAAATTAAACGTATATTGAAAGTGCTTACAACATAATTTATAAATCGGGCAGTGGTTTATGATTTTTATGAAAATCAATGATACTTATTCCGCATCCTGCGAATTAACTTTTCTAGAAAAAGGGAGAATGAAAATGATTAACACTATGAATGAAATTATGAAATGTGTCGAAGAAAACGACACAATTATTATACACAGACATGTTAGACCTGATCCTGATGCATACGGATCACAATTAGGCTTGAAATATTATTTACAACAAAAATTTCCACAAAAACACATTTATGCTGTAGGTGAACCAGAACCATCATTAAGTTTTATCGGTCAATTAGATATAATTGATGATTCAACATATCAAGAAGCATTAGTTATTGTTTGTGATACTGCTAACGCACCGCGCATAGACGACAATCGTTATGAATTAGG # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATGTGCCAGTTGGGGTGGGGCCCCAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 200097-199906 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWHC010000003.1 Staphylococcus singaporensis strain SS251 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =============================== ================== 200096 25 100.0 31 ......................... ATGGATCAAATTTCTCTATGTTGGGGCCCCG 200040 25 100.0 30 ......................... GAGATTCTAATTTCTCTATGTTGTCCCACC 199985 25 100.0 30 ......................... GAGATTCTAATTTCTCTATGTTGTCCCACC 199930 25 88.0 0 .......A.T...C........... | ========== ====== ====== ====== ========================= =============================== ================== 4 25 97.0 31 CCAACTTGCATTGTCTGTAGAAATT # Left flank : TGCGGCACTTATTTCAATTCGATTTAAGCCAATCTCTTCGAAACAATACTTTATCAATATCTTGACGGCTTGTGTCATAACTCCTTTACCCTCAAATTGTTTATCCAAATAGTATCCTAATGATGTTTTTCTATGCATATGGTTAATTTCATGTAAACCGACTACACCAGCTAGCCTTCCTTCATACCAAATGCCACACTGAAACCCATTACCATCCGCAAATTGCAAAAGCCCTCTTTTAATAAACGCACGCGTATCTGATGGCTGCTCAGTTGCATCTACCCAAGGTAACCATTCCCTAAGTGAATCTCTTGAACGATTGACTAAATTGAAAAGCGCTTCTGTGTCATGAGCTTCTAAAATTTTTAATGTTATTTGTTCATTCACTTTCATTCCAAACATACCATCACATCCTCATTCATTTTTCATATAATTCTGTAAATTATTATTATAATAACATATTAATGTTACGCATTGTATCTTAAATTTGTTGTCCTACC # Right flank : GTGGATCCAATTTCTCTTTGTTGGGGCCCCGCCAATATAGCGTTCTAGTGCCTATTACTTTGATTTATGCCCTAAGCTCCTGTCACACAACTTAAATGAAATAACAATTTATTAACCATTCCAAATTTATATTTAAAAATACGACAAAACAGTGCTAAAATGCTATTAAAGGGGGCACAGCTCATGGCATTATCGAAAAACAAGCATTTTATTGTTGGACTATCATTAACATTTATTGTGGCTTTATTTAGTTTTTTAGTAGCTAAATTACCAATATTAGATAAAGTCGGTGCACTAACTATCGCGATATTAATCGCTATTCTGTATCGTCACTTTAAAGGATATCCTGAAAAATATAGCTCAGGTATTACATTTTCATCCAAATATTTATTAAGATTTGCAATTATCCTATACGGACTTAAACTCAATATATTCGACATTATCGGGCAAGGAAGTAAATTATTGGCCATTGATGTAGGCGTCGTTATTTTTAGTATTGT # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAACTTGCATTGTCTGTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 59209-58888 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWHC010000005.1 Staphylococcus singaporensis strain SS251 contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 59208 36 100.0 35 .................................... ACAAATAAGTGTTTATTAACTACCTTAACATTAAT 59137 36 100.0 36 .................................... TACACTATCTTAATTCTAGTGTCAAGTATTATTTTG 59065 36 100.0 35 .................................... TCTAAAAAAATACTCATCATAGAAAATGAATATTG 58994 36 100.0 35 .................................... TCCTGCGTCATGTCTTTATATTTTTTAGTCATGGT 58923 36 97.2 0 ................................A... | ========== ====== ====== ====== ==================================== ==================================== ================== 5 36 99.4 36 ATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC # Left flank : TAAGAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAGTTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTAGAAAAGAATATCAATATTGTTGACTATAAATTGAAAAGCACACGGTTTAACTTAGAAAAAGTTAAAATTCCTTCATTTACAGGAGAAATAGTGTTTAAAATTAAAGGACCATTACCTTTTCTACAATTAACTCATTTTTTATTGAAGTTTGGTGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAATATAGCTGAAATTTAATTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCACTATTTTTGACAGCAAATTTTATATTTGAACTATTGATTTAATAGGCTTTAAAGAGCTAGCT # Right flank : CTCATCTTGATGATCCCAATTGGCTTGGTTAAAAAGAAATCGATAACCTTTCGTAGAATAGAGAATAAGTATTAAAAATATATTTGGTTTGATAAAATATTCTGCAAAAAAAGGGGAACAAAAAAATCAAGATTTAAACTGTAATTCATTATCTTTGCAATTAATTGACATTCAATTTCTAAATAAGCAGAGACAAAAATAACTTTCATACAAATAATTTCTTTGTGATTAAGTTGGAATTAGAAAACTAATACTAAACGAATGGAATGTATATTATTGAGGAATTGGATGCAGTGTGGTGCAATTTCGAGAACTACTACTTAAGAAAATAAACAATAAGAATTAAATCTGAGTCAAGATATAAAAACAAATATTTTTACCATAACTATATTAGTTGGTATGTCAACATTTTTTAGACAGTTTTCATGTGTAGATTTTTAAATGCCACTGCCGTCAAATACTGTAATGAAGAATGTGGTCTAAAATTGTTGTACCAATTT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.50,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 2 68392-67930 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWHC010000005.1 Staphylococcus singaporensis strain SS251 contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 68391 36 100.0 35 .................................... TTATAACTATCGTGATAATGTAAAAAATTAATAAT 68320 36 100.0 35 .................................... AATAATGCTCTTACGATGTATTCTTTTTTATTTCC 68249 36 100.0 36 .................................... CCATATGTTCATCTATGGCAATACATTTTCCTTTTT 68177 36 100.0 35 .................................... TGCGATACTTGCGAATCCTGCAATTGACCACGCTG 68106 36 100.0 35 .................................... AATAAAGTTAGTTGCTTCTGTTCCTCGTATTCCAA 68035 36 100.0 35 .................................... TCAAAATTAAATGTTTGTAATTCTTGCAAATTTTT 67964 35 91.7 0 ..............................-...GT | ========== ====== ====== ====== ==================================== ==================================== ================== 7 36 98.8 35 GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Left flank : CCCAACTGTTACTAATAAAGTATCAAAAATTTCCAATGAATATTTATTATATTTTGGTATATTTATATAATCATTAGAAACAAATTTTAAATTATTCATCTCAATTAAGCAGCTAGTTTTAGATATATTTAAAGTTCTTAAGACTGATAATTTGCTACTGTAAATATATTCACTAGATTTAAACGCGTATCCTGTTCTAATATCAGCTATATTTTTTAATGAATTAATATTCCAATTTAAAGGTATTTCACCTAACTCACTATCAATCATTTCTCCACCATTAGATTTATAAGGAAGAGAAAGTTAAATTTAAATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATAAGTAAAATCATCATAATATTTGTCAAAAAAAGTAACATCTCATATAGTAGCGTGGTGTTAGTTGTCACAATTTTTGACAGCCAAAATAATACTTGAACCCTTGTGGTTATGCTATCTATTAAAGTATCT # Right flank : GTAAATTTAATTACACTCTAAAATTCGTGAATTTTTAATGGAATACGCATGGATTAATTTTTAGGGGATGGAAAATGAAAGATGTTATTTATGTAGAAAACCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATATAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAGTTAGTAATTAAATGTATTGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTACGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAATTCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.50,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], //