Array 1 106153-105225 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUJT01000013.1 Photorhabdus sp. RW14-46 RW_46_scf0013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 106152 28 96.4 32 ...........C................ GTGAAAAATCTTCTTCAGATAAGGTTGGACCA 106092 28 96.4 32 ...........C................ TGAGCAAGGTAATGAGCAGATTAATGGGTGGT 106032 28 96.4 32 ...........C................ TTACGTGCCAGATGGTGTAGTCTCAGCCGTTA 105972 28 96.4 32 ...........C................ GCGGCTATGTAACGCGCTGTTCGGCAGGACGG 105912 28 100.0 32 ............................ TAGAATCAGTTGCAAACCGAGAGGCCGCGTTA 105852 28 100.0 32 ............................ TGACGTCTTTTTTCAGCTATGGGAGTGGCTGT 105792 28 100.0 32 ............................ AGTATCGGCGGCCAATACCCCTTCAATCCAAC 105732 28 100.0 32 ............................ GTTTGGTTTGAACCATCCAGTGACGCCAACTG 105672 28 100.0 32 ............................ GATCCGTCGTGACTTCAATCGCTTTGATCAGC 105612 28 100.0 32 ............................ TCGAAAGCTTGCGGGATACGGACGCGAAAATT 105552 28 100.0 32 ............................ ATAAAGGCGGTTTATGTTAATTAGACGGGTTA 105492 28 100.0 32 ............................ ATAACAAAATGCCGCATTCGATGCCATTTAGC 105432 28 100.0 32 ............................ TTTCATTTCATTGCTGATAGTGCCGCCCTTGG 105372 28 100.0 32 ............................ AGACAGATTAGAAGTGTATGTGACAGAAGGAA 105312 28 100.0 32 ............................ TGAGTAAGCTTCAATGAGTTGACTTATTTGAC 105252 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGATGATGTACGAAGCTTTACAACCAGCTATCCGTTATATGCAACGCCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCAGATAATCATCGTAGTGGGAAGTTGTTGGAACGATTGGGTTTTGAACGTGAAGGCTATGCTAAGAAATACCTGATGATTAATGGAGTTTGGCAGGATCACGTATTAACCGCATTGACAGATGAAAAATGGAGTGGAAAAAGTTGATTATTACGCTGTACTGTCACCAAATAAAGTAAAGCAAATTGGTAATGATGAATTAAATCACTGTTGAAAATCTGCCTTCTCCACCCCTTATTTTTGACCCTTTTTTGAGAGTGGATTTTAATCTATTGATTTTTAATGGGATATTATTTCTCTTGTAAAAAAGGGTTTTTTCATTGTTTTATCAATATATGCTTTAATTGTCAGTAGGTTGAAGTTAATATGTAACA # Right flank : TGAGTAAGCTTCAATGAATTGATTTATTTGACGCACTGACTTCGGTTGGTGCGTTTTTCGAAGTGGCTATTTGGGCTTTCTGTAGTAAGGCTAGTTGCAAGGTACCATCATTTAGGCCAAATACAATGTTACATTGGCAAATTATAAAAGTTAATGATTTCTAGTGTATGAGAATGAATTTATGCATACTCGCCGATTTTGTTAACAAAGTGAATGATTAACCATGGTAGATTCATATAATAAGTGCAATATCGTTCCTCTTAAAATCAACATGTCCGTATTACTTTAAATTATTAAATGGACATTTTGTTATTGATTATCATGAAAATAATTTGAATGGTTTCTTTAATTCGTATAAATAGGTATTATTCTGATTAGTATATTTAATAAATATTGAAGTTCTTTTTTATAATGATTTGATAAATCATAACTTTTATTTCATATTCACTGGATAATGTTGGTTTAATTAAAAACAGATAAATAAAGAGTGATTGAAAATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 69355-68126 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUJT01000003.1 Photorhabdus sp. RW14-46 RW_46_scf0003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 69354 28 100.0 33 ............................ GAGCAATGACCTCAGCAGCCATCGTTTTGCCGG 69293 28 100.0 32 ............................ GACAAACTACACGTAATTTGGATTGATTCAGC 69233 28 100.0 32 ............................ TTGGTTAACCACATCACGCTCCAGGTGCCATT 69173 28 100.0 32 ............................ ATTGGGCCCAGATGGTAATCCTATCTTTATAG 69113 28 100.0 32 ............................ CTAAAGTTCTTAGATGAGATGCCAGAAATATT 69053 28 100.0 32 ............................ CAAATGAACAAGTAAATGAGATAGCATCAAGG 68993 28 100.0 32 ............................ TTCGGCGTTGAGCAAAATTACAGCGCTGAACG 68933 28 100.0 32 ............................ ATTAAATTATCAAGAAAACTCATTCAATACCC 68873 28 100.0 32 ............................ ACAATCGCTGTGGGATTAGCGGCTTGCATACC 68813 28 100.0 32 ............................ TGGTGTTAAACGCAGAAAACCTCAGCCGTGGT 68753 28 100.0 32 ............................ GATTAAATCCATGACTGAATGTAAGACATTGT 68693 28 100.0 32 ............................ CTACAAAATACAATGGATAACGCTGGAGTAGA 68633 28 100.0 32 ............................ CGCTCATAACCTGCTTATTGGGATGGATGAAA 68573 28 100.0 32 ............................ ATGCTTGATTGCTGATAGGACACTGAGCGGGT 68513 28 100.0 32 ............................ GACATCTTCGAACTGATGCAACCCGCAGGGAT 68453 28 100.0 32 ............................ TTTCAGCAGCGCAGGCAAAAAAGAAGGGGTTG 68393 28 100.0 32 ............................ TTTGAAAACTCCCTGAAGCAATGGCGTGACCG 68333 28 100.0 32 ............................ CTCCGCTAACTGTGAGATTAACTTTTGATTGC 68273 28 100.0 32 ............................ ATGTTTAAGACCTATTATTAAGCTTGAGTTAA 68213 28 100.0 32 ............................ TCCTGCAAGTTGTGCTCCTAGTCCTGCTCCAG 68153 28 96.4 0 ....................A....... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGATAGACGAGGTATTGATAGTGGCCGTAGAATTTTAACGCATCAGGGGGATGCTATCCGAAATATTCAGGGCTCGTTCGCCGGCATGATAGCACTAAATTATCATTTGGCAACAAGAGGGGCTTTTTATGCTAGTCAAGTTCTTGGAATAGCGACAGATGGCAGTTTCAAATCGATAAATATTTCTGACACAGATACTCCATACGGCTTTGGGTTCGAGGCGTCAAGGGTTGTTCCTGTAGCCTCAGAGAACCGCCCTCGCAACATAGCATTTAATTACATAGTGAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCTAGAAGAAGAAGAGACTGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGCAAATTTTAATTTATTGATTTTTAAGTAAATATTTTTTGTCCCACAAAAAAGGGTTTTTTATTTTTTATCATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACA # Right flank : AGAGGATTAATTGAGCGCTTTTAGTGAATATTTATTCATTGCACAACAATGATGTTAGGAAAGCATGTTAGGAAGGGGAGGGGCCGGCATAAAAAAAGCCACCTTGCGGTGGCCTTTTCTTTTTCCTAACTCACTGTTTTATCAGCGAATTTCATTTGGTGCCCAGGGCGGGACTTGAACCCGCACAGCCTTACAGCCGAGGGATTTTAAATCCCTTGTGTCTACCGATTTCACCACCTGGGCTGAATTTGGAGGCGCGTCCCGGAGTCGAACCGAGGTTGACGGATTTGCAATCCGCTGCATGGCCACTCTGCCAACGCGCCTTTCTATATTCAACGACTAATTCAGCATCCAACTTCTGAACAGTAATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCAACCTTGGCAAGGTTGTGCTCTACCAACTGAGCTATTCCCGCACCGCTTTGAACTAGCTGATTTACTTATTTGTTTTCGTAAATCTCATGTGCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 75058-74250 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUJT01000003.1 Photorhabdus sp. RW14-46 RW_46_scf0003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 75057 28 100.0 32 ............................ ATGGCGTTCTAATGCCATCAACAAGCGTTCAT 74997 28 100.0 32 ............................ GAAAACTCTACTCAAGATGATGAGGATATAAA 74937 28 100.0 32 ............................ AAATATCCTCTCTGATTGCCATTTTGTGATAT 74877 28 100.0 32 ............................ AACAAATGCCCCTCAAAAACCCGAAGATGGAT 74817 28 100.0 32 ............................ TCAATACCAGAAAAATTTCCTCCTAAAATAAA 74757 28 100.0 32 ............................ TTGATATTTAATGTAGCTTCATTAGAGTTAAA 74697 28 100.0 32 ............................ GGCATTGCTTGAGCGTCTGGTTCAGGAAAAAC 74637 28 100.0 32 ............................ AGAGGTGCCGCTCATCAGCAACCCCTTCTTTA 74577 28 100.0 32 ............................ AAATGTTTTGGGGCCAGCATTTCATCCAGATC 74517 28 100.0 33 ............................ ATCATATATTTTGAAACACAAACAACTTATTAT 74456 28 100.0 32 ............................ AAGATAGGGCGGATCGCAATATATAACATCAT 74396 27 96.4 32 ..........-................. ACCTCTCTTGACCGATGTTTTTACCCCCTTTA 74337 28 100.0 32 ............................ TCTTTAAGGCTTTTCCTCTCAAGCTGTCTCAA 74277 28 96.4 0 .......................G.... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TATTGATAGCGGCCGTGGAATTTTAACTCATCAAGGGGATGCCATTAGAAATATTGTAGGTTCATTTCCTGGGGCAATAGCACCAAACTATCATCTTGCAACAAAAGGGGCTTTTTATGCTAGTGAAGCTCTTGGGTTGGGCACAGATGGTACTCTTAAATCAGTAGATCATTTTACCCAGAGTGCTGTATACACTGCATACGGTTTCGGGTTTGACGTGTCAAGAGTTGTTCCTGTAGCACCAGAGAACCGCCCCCGCAACATAGCCTTTAATTACATAGTGAAAGCAGCATAATGGTTGAACAAAAATACGCTTGATAGCCGGCAATAGAAAGAGAGATGGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGTAAATTTTAATTTATTGATTTTTAAGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATAATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACA # Right flank : AGCAACGCTACGTTGTTTTCCTCAGATTTGCGGATATGTTCTTCTAGGCGGTAGCGAGTCATATTAAGATGATAACGGGTATAAAGCTAATTCGTTTTTGGTGGTAACAATATTAGGGTTATCTAGATCCACTATCTCATCTGGTTCTTTCGAATTTTCTTGGAGTTCTATTTCGTCTTGAACTCCATCAATCGGAGCATGTTTATTTGAAAGACCGGAAACCACCATTGCGCTGACAGATTTCTCAACAGCCTGTTTTACCAACGGGGTGATTGATTCAATAAAGCGCTGATTTAGTTGGCGTTCGACATTAGATCTATTGGCAACATATCTCACAAATTCACTATCAACATCTCTCAAGCTAGTGCTGATGGTTTTAGTAAAAGCGGATAAGTAAACACTTTCCTCTGCAAGCGTCCTTAGCGCTTCCGGTTTGAATTTATCGTGTCTAAATCGATAGAGCTGGCTAACATCTGCATCGCTAACTTCATCCATGTTAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 21082-19852 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUJT01000006.1 Photorhabdus sp. RW14-46 RW_46_scf0006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 21081 28 100.0 33 ............................ ATACCCAATGCAAATTGTATATGTGCTCGTGTT 21020 28 100.0 32 ............................ ATTAACTTATCCGCATTTTCTTTAGAAACAAC 20960 28 100.0 32 ............................ TCACTCAACGAAATTCTTATCCATTTCTAAAA 20900 28 100.0 32 ............................ TTCCTGGAAGGAAGATGTTGCTTATCGCCGTA 20840 28 100.0 32 ............................ TTTATTCTTTCCGCTCAATCTGAGAAATCCAT 20780 28 100.0 32 ............................ AAAGATGCTATTGAAAAAGAAGAGCATAAAAT 20720 28 100.0 32 ............................ GTTAGCCTGTCTGACTGTATCAAAGTGATTTT 20660 28 100.0 32 ............................ TATGGCTGATGTTGCCAACATATGCCGCTTTC 20600 28 100.0 32 ............................ TGATGAAATTGAGTATGACAAGTTGCCATCCA 20540 28 100.0 32 ............................ TTCATCATCGAAACCGTCAGTTATATCTTTGA 20480 28 100.0 32 ............................ GAGTTGTGGATTGATGATAGTCAAATTGATGA 20420 28 100.0 32 ............................ TTCTGCTGATTGTAGTCGTTTGGCTACCTGAT 20360 28 100.0 31 ............................ AGCAACATTTTTCGGCGGAGCTTGAACACCT 20301 28 100.0 33 ............................ GTACCTGACGCCATCGATAACATCCTGAATTTC 20240 28 100.0 32 ............................ ATATTCAGAGATAGTTATTCTTCCACGCCCAT 20180 28 100.0 32 ............................ TTACGGACGGGTGGGGGATTATCTTCGTATTC 20120 28 100.0 32 ............................ ATGAGATCGACATCCCGCGCTCAAATATCTGG 20060 28 100.0 32 ............................ AATACAGCCTGCATAAATACCCTCACCATCAG 20000 28 96.4 33 ...........T................ AAATATTTTCTGATTTTGCATTTCTCTGAACAA 19939 28 100.0 32 ............................ ATCAGCACCGGAGATAAATAATGAATAAATAT 19879 28 82.1 0 .....................AGC.C.C | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCGCTGAATGACTTGCAAACATTATCTTGGTTAAAAGGACTCAGGGATTATACTGAGGTGATTGATATCAAGCTGGTACCTAAGGATGCTCGATATCGTCGTGTTAGCCGAGTGCAGGTAAAAAGCAATGTTGATAGGATTCGCCGTCGTTCGATTAAAAAAGGATGGTTAACGGAGGAACAAGCCTTGCAACGCATTCCTATCAGCAAGGAACAACGCACTCATTTACCGTTTCTGTACCTTAAGAGCTTGTCATCAGGACAAAGTTTTCTGTTGTTTGTCAAACAAGGGCCAATACAAGACAAACCGACGTCAGGAGTTTTTAACTCGTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACC # Right flank : TTGATTGAGTGCGCTAAAAAAGCAACCTTTTTTCTTCTCGATATGCATCAATTGTTGTGCTTTTGTGCATATTCTTCACTATTAACCCATTGGTGGTCTTTTTCCCAGGTAAATAGCCATTTACGAGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGGTAGCCTTTGGGCACCATTACCACATCTTTATTGTAAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACACGTTGCATGCAGAACCCTTGAGAAGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGTGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAGCTGGTGCAGCCTTCATCGGTAAAGACTTCAACCACCAACAAGCTATCAGCAGGTTTATTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAACCATTGCCACGTTGTTCTGCATCAATATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 31429-30561 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUJT01000006.1 Photorhabdus sp. RW14-46 RW_46_scf0006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 31428 28 100.0 32 ............................ TTTCGATGTAATTATTATACGTCTAATGAGCC 31368 28 100.0 32 ............................ TTTCATAATTTTCTCGCTATATTATATTTCTA 31308 28 100.0 32 ............................ GTACATCGTTCTACCGCCAAGAGAACGGAGTG 31248 28 100.0 32 ............................ ATCTGGACCCAATGGACGAGTATCTTCTACTA 31188 28 100.0 32 ............................ ATCGGGAACATAAGGTTGAGCATTCCATACCT 31128 28 100.0 32 ............................ AGATGTTCCTGAGATACAATTATTGTCAAAGT 31068 28 100.0 32 ............................ ACTTATTGATCGCTGGGAGATTATACATAACT 31008 28 100.0 32 ............................ AAAAACAGAAGCTGGAACAAGAGTAGTTACAC 30948 28 100.0 32 ............................ AGATAGCCTTTCCAGTTCTCCAGAGTAAACGG 30888 28 100.0 32 ............................ GGTTTGCTGTCCAGTGACTGTAGTTCGTAAAA 30828 28 100.0 32 ............................ AGTCAGTTCCTGAAAATATTAATACTCAAAAA 30768 28 100.0 32 ............................ AAGCTAAAATATCTTGTTTATCGAAGTCTGAA 30708 28 100.0 32 ............................ AGAGAGTTATCCAGAAGTACATAGAGACGCAT 30648 28 92.9 30 ....................T...A... TAGAAAATTATCCTCTTCTCCTAAATTATC 30590 28 75.0 0 .A........AC.....T..T.....GC | GT [30582] ========== ====== ====== ====== ============================ ================================ ================== 15 28 97.9 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAATCATTTTTTATCTGTAATTTTTATATTTGCTCTCATAATAACATGTAATATAGATTATATCTTTAATTAAGCTAATTATATTTCTGAAAATATGAATTGGATACTTGTTAAATTGGGTAATACTGAATTTTTCAATATTTAAGTACATGGTGAAATTAATGAAACTGTTGGAATATTGGATGATGTCACTATTGAAAGGGGCTGTGAGATTAAGAGGTACTGATTTTTGTCGATGACCGAATTCAGTGAATGGTTCCAGTATCATTGAACATTTTACAGGCAACAATTCTCACTTACTGGATAGATCTTAGGCTTAGAACAGATGACTTAAGTATGTGATGGTATTTTTGCTGCTACCTTATTTTTACCCTTTTTTTGAAGTGAGTTGTAATTTATTGATTTTATGGATAAATTAATTATCTCTTATAAAAAGGGTTTTTCACTTTTTAGTAGTTATGCTATTTAAAAATCAGCAGGTTAAAGTTAATATGTAACA # Right flank : ATAATCATTCCTGTTTAGGGAAGGCACTATTCTGTGAGTTAGTAAAGAATTGTAAAAATTTTTAATTTACATCTGTAATGTTTTACTTATGTAAAATTTATACATAGTATTTACCATAAGTTAAATTAATTAGTTAGGTAATTCTACATTATGGATAACAACTTTTCTCCGAGTGACCTTAAAACTATTTTGCATTCCAAACGCTCGAATATTTATTACCTGCAATATTGTCGAGTATTAGTTAATGGTGGCCGCGTTGAGTATGTCACTGATGAGGGAAAGCAATCCCTGTATTGGAATATCCCAATTGCAAATACCACCGTTATTATGTTGGGAACGGGTACTTCTATTACTCAGGCAGCAATGCGTGAATTTGCTAAGGCGGGTGTTTTAGTTGGTTTTTGTGGAGGTGGAGGTACACCGCTATTTGCGGCTAATGAAGTTGATATATCTTGGCTGACACCGCAAAGCGAATATCGCCCTACGGAGTATTTACAAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 36706-35297 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUJT01000006.1 Photorhabdus sp. RW14-46 RW_46_scf0006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 36705 28 100.0 32 ............................ CCAATTTTCGTGGCATGACTTCAGAGTTCACG 36645 28 100.0 32 ............................ GTTCGTAATAGTGATGAGTGATAGTTCTGGCT 36585 28 100.0 32 ............................ AATCCGACGGCCAGTGTCACATTTCGTATAAA 36525 28 100.0 33 ............................ GAGTTTATCTACCCTCCACAAGTCAGCCCTCAG 36464 28 100.0 32 ............................ ACAAGGTAGTGAGTGCTCAGCGCTTCCAGATC 36404 28 100.0 32 ............................ GTTTGCGGCACCTTCTAGCACAGCGCCCATTC 36344 28 100.0 32 ............................ TTGGAGGAAGGCAGGATTTATCAGTTGTTAGC 36284 28 100.0 32 ............................ TCTCAGGGCAATGGGGGGGAAACTGGGAATAT 36224 28 100.0 32 ............................ TATTGTTGCTACGCTAGATGGGAAGAAATTAA 36164 28 100.0 32 ............................ ACTAGGAGACCGAGTAGAATCCTATGGTAGTA 36104 28 100.0 32 ............................ AAGCAGGGAGCTGATGAAGAAACGGATGGTAA 36044 28 100.0 32 ............................ CGTTCTATCGATACTCATGCCGATATCAATGA 35984 28 100.0 32 ............................ ATGTAAACCCCTACGGGATATTTGAACTTGAT 35924 28 100.0 32 ............................ GATGGGGACGGGAAATGGACCAACTCGCAAAA 35864 28 100.0 32 ............................ ATCAGGATAAGCTAGCGCTAACTTAGGATATC 35804 28 100.0 32 ............................ TTGAGCTCAAGAAAGTTCTATGTTGGGCTTGT 35744 28 100.0 32 ............................ ATTTCGGCTGGTTCGATATTGACACTTGTCAT 35684 28 100.0 32 ............................ TACCTGACGCCATCGATAACATCCTGAATTTC 35624 28 100.0 32 ............................ TCTCAAATTTTGTTTCTGCCCGATGAACGCGC 35564 28 100.0 32 ............................ GCCTACAGCAGATAAAACGTTTTTAATATACG 35504 28 100.0 32 ............................ ACTGTACCTAGTACCCCTCCTACTGATTTTTT 35444 28 100.0 32 ............................ AATTTATCAGCAATCTCATTCAAAATTAAATA 35384 28 100.0 32 ............................ ATTCATAATAAGCAATTGAAGAGCTAGGATGA 35324 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.9 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAGGAAGCAGGTCTGGATGTTGTTATGGATCGTTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATATTTTTCAGCTTGTAGTTATTTGGTTTCTAATTAGTGGATGAAGGGACCCTGGCACCAATATCTAATGCAAACTTAAGGCGTTGGATGAGAAACGGTGTCCGGGTTCCAAGTGTTCAAAATAATGTTTGAGTTGGATATTGAGTTTACTTTTCTAGACATCTTATAAAATCTATTTTTACAGTTATTACAATATCTTAAGGAAAATTTAGTTGCTCTTATTGCTGCTAGATTTTGCCAGAATCTACACTTTTATTGCTATAAGATATGGTGCTTTTGTTGTGCCCTAGTTTTGACCCTTTTTTATCATCAAAAAATAACCCATTGATTTAAAATAAAAATAAAATATCTCCTGAAAAAAGGGTTTTTTCATTTTTTATCACTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : CGCGATAACTGCCTTAGGTTGTTAGGTATAATATTGGAGGTTAATTGCGCAGTCTTGGGGCCAGTAGTTGATGGCGGATGGATTCTGCTAGCTCATCGAGAGAAGGTTGCTCTGGATGTTCATCGGATGTTTCATAGGCTAATTGTGCTTCGGCCAGATAAGTATGTACAGGTTGACCATTGTCATCTTCCATCACAACGTGATACCAGGGGGCGGAACGCAGGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGTGAGTATTCCACATCAATATCCACGATGACTCCCAAATAACCCAGAAGTTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGTCTTGTATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCTGTACCCGGTAGTTGAAGCCATTTTTTGTTTTAAATTGCAAATGTGGCTTCATCTATTTTCAGGTTAGCTGTAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //