Array 1 1-228 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_KV798013.1 Neisseria sp. HMSC072C05 Scaffold347, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
         1	    33	  91.7	    30	---.................................	AAGTAACCGACCGCTTGAAATGGCTGCTTG	
        64	    36	 100.0	    30	....................................	ACCTCATAAGTTGATGAACAGCTTATACCG	
       130	    36	 100.0	    30	....................................	TAAAACCGCCATTATCCTACATCCCCCCTC	
       196	    33	  91.7	     0	.................................---	|                             	
==========	======	======	======	====================================	==============================	==================
         4	    36	  95.8	    30	GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   |
# Right flank :  |

# Questionable array : NO	 Score: 5.65
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,11] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.37   Confidence: HIGH] 

# Array family : NA
//


Array 1 33905-34377 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_KV798025.1 Neisseria sp. HMSC072C05 Scaffold591, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
     33905	    32	  93.8	    34	C..........T....................	AATCCCTATAAGGATGAACAGCACACCGTACAAC 	
     33971	    32	 100.0	    35	................................	CTGAACCGCCGAAGCCACATCTATCAGAAGATGAC	
     34038	    32	 100.0	    34	................................	TTCGCGCATCAGGCGCGTGCCGATGCGCGTGAAC 	
     34104	    32	  87.5	    12	C.....A.....G..............A....	AACCAGCGCGAT                       	Deletion [34148]
     34148	    31	  78.1	    33	GTT...AAA...-...................	CGCAAGGGCGATATGATCGTGATTTCCAACCGT  	
     34212	    32	  90.6	    35	C.....A........T................	CGCCCATGATGCTAAAGCAACCTTGGAAAAGCTTG	
     34279	    32	  81.2	    35	A.....A.....G..TC..........A....	TCTAGCAGCTACAAACTTTATGCCGACCTATCCCG	
     34346	    32	  84.4	     0	.....A......G..A...........C...T	|                                  	
==========	======	======	======	================================	===================================	==================
         8	    32	  89.5	    31	TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC	                                   	       

# Left flank :   GCATATGGGAATGCAAAATGCTAATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGAAGGACAGGCAAGACTGCGGCGCGTGGCGAAATTGTGTCTGGACTACGGCGTGCGCGTGCAGTACTCGGTATTCGAATGCGACATCGTACCCGACCAGTGGGTTGTTTTAAAAGACAAACTCTTGAAAACCTACAACTCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGGAAAGTGGAACACCACGGCGCAAAACCGTCGGTGGATGTGTTTAAGGATACCTTGATTGTGTGAATCGCCAACCTGAGGTTCTCATGAAAATGCGGCAGGGTTGGCGAACTTGGATTGTTCTTTAACAATCAGGATATTGCGAATGCAGGTGTAACAGAAAAGGCTGTGTTATACTCGCGTTCACGCTTTTCTCGGGAGCTTAGCGAAATCGGGGCTGTGAAACCTGACAGAGCAAGGCTTTTGAGAGGGGCT
# Right flank :  TATCGTCCAAGCAGGCCGCTCTTCTTTTGATCCTTCGCTTTCCGAAGCTTTAGTGAAAGCAGTAGAGGATATTAGAAGCAAGTTATAAAGGTTAATCAATAACAAATGCTGTCTGAAAAAGTTTCAGACGGCATTTTTTCTATTTATATATTAAATTTAATATCATATTATCATTGCATGATATCAGTTTGAATTTTTTTAGAATTTCAATATGAAACCCCTAATTTACTATGCTCATTTTGCCCAAGATGAACTCGGCAATCTCTTGCCTTACGAACATTGGCAAACCTTGCAAAGTCATTCGGTAAATGTTGGGGAAATGGCGGCAGAGTTTGCGCGAGTATTTGGGGCACAGGAACAGGCCTGCCAGATGGGAAAGTTGCATGACTTAGGGAAATATTCGGAAGCCTTTAATCAACGATTGCATGGCGGCCCATCAGTCGATCATGCTACCGTTGTAGTCAAAATTGCAAAAATGCTTGCTTTAGAGTGGAGGTCAA

# Questionable array : NO	 Score: 4.93
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.47, 5:0, 6:0.25, 7:-0.26, 8:1, 9:0.47,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [5,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-3.50,-4.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-22] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0.74   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
//