Array 1 167622-167470 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBW01000022.1 Nocardia puris NBRC 108233, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 167621 30 100.0 31 .............................. CCCTGCCGAGATCCTCGAACTTGGTGCCGAA 167560 30 96.7 31 ............................T. TCGTTGAGGTTCAACGGTGTTTCGTCTCGGA 167499 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 3 30 98.9 32 GTGCTCCCCACGCACGTGGGGATGGTCCGG # Left flank : TCGAGGGCGATCATCGCCATCACGCCCGCGTCGGCCTGCACACCGCCCGCCTCGGTGTCGCCCTCCCACGCGTCCGGTTCCCGCCACGCGGCGACGAGCGCCTTCAGCTGCGCCGGGATCCGAGTGCGCCAGTCGGGGGCGAGGTTCTCGCGCCCACCGGGCGGTGGGGACGCACTGTTGCCCACCGATTCCTTGGTGGCTGCCTGGCGGAACGCCTCGGTCAGGCCGACGACATGATCGAGCAAGTCACCGACGGTCATACCGGCACAGGGCGTCGCTGCATCGAGCTGGTCGTCGCGGATACCAGCGACCACCACCGCCAACTCGTCGGCCGCGGTGTCGAGATCGAAGGGCTGCATGCGGGTCTCCTCCGTGGATGGAACCTTCCACCCATATCGACGCCGCGAGCCTCCCGAATTCATCGGGTGCCGGATCCCGATCCGCATTCTCGAGTGGTCGAAAATGCGGTTACCCACGGGTAGAGTGCCAGGTCAAGGAGT # Right flank : GTGTGGTGGGCGGCCGGGTCCGCCCGGAAACGCAGCAGGACCGTCCGCGACTACTTCACCTCTACCGCAACGGGATTCGGTCCAGTGCCGGGACGGTGGCGTTCAGGACTCGGAGGCGGCTCAGGGAGAGTTGGGCCTGGCCGTTCGAGCCGGCGCGGCCGGCGGTGCCGGTCACCGTGCGCAAGGGACCGTTGTAGATGATCTCGTGTGGGACGCCGGGGTGGCGGGAGAGGGCGAGGACGAGGAGGGCGTCGGCGGCGGCGTGGGAGGTGGTGCGGAGTCCGATCGCTCGGCTGCCGTAGGTTCCTTTGATTTCGACCGCGCGGCCGTCGGCGGCGATCGCGTCGTGGCCGGTGGTGGAGGGAGGTTGGAGGGTGATGTCGAACAAGGCTTCCGCCGCGGCTTCCGCGAGGGCACCGACGAGGTGGCCGTCCGGGGTGAACTTCCGACCCGGGTGGAGCGCTTCGAGTTCGGCGACGATCGCGTGGAGCTGCGAGACC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 37456-36752 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBW01000024.1 Nocardia puris NBRC 108233, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 37455 30 100.0 31 .............................. GAACCGTTTTGAGCTGGCAGGCCATGAATTG 37394 30 93.3 31 ............................GT CCCACTCCCGCTTCGAGCGGACCGACCGCAG 37333 30 93.3 31 ............................GC CTTGCGCATCGTTGACACCGATGGTCGTGGC 37272 30 93.3 31 ............................TC GACCTCGACGCCCGCAGCGCCTCCCCGGTCC 37211 30 100.0 31 .............................. ACATCTGGACGCGGCCCGAGCGACTGCTCCG 37150 30 96.7 31 ............................G. CGTAGGTCTTCGCGGCGGTATGGATGTCGGC 37089 30 93.3 31 ............................GT ACGGCAACGAGGCCGCCCACGGCGTGCTGCG 37028 30 93.3 31 ............................GA CGACACCGACCGCCTCGTTCGCCCAGCCCGC 36967 30 96.7 31 ............................T. TCTTCGAATGGCTCTAGTGCGAGAAGTGTCC 36906 30 100.0 30 .............................. AGGGCAGTGGCTGAAGACGGAGGGCGCGCG 36846 29 83.3 31 ........-..AT............G..G. TTCCCGCGTATGCGGAAGGCGCGACAGCGGA 36786 30 86.7 0 .............CT.C..........A.. | GCT,T,A [36759,36764,36766] ========== ====== ====== ====== ============================== =============================== ================== 12 30 94.2 31 GTGCTCCCCACGCACGTGGGGATGGTCCCG # Left flank : CGCACTCGCCCGCGAGGTCGGCTTCACCCCCGACCTCCTCGCCCGCCGTCCCCACGAGGTGAGCGACGGCCAACTCCAGCGCGCCTGCGTCGCGCGCGCCCTCGCCCAGCGCCCCCGCTTCCTCCTCTGCGACGAACCCACCGCCATGCTCGACGCCGCCACCACCGCCGCCATCGCCCGCCTCCTGACCACCCGCGCCACCGCCGGTGACCTCGGCCTTCTCCTGGTGAGCCACGACCGCCCGCTCCTCGACGCCTGCCACGCCCACGTCCACACCCTCACCGCGGGCACCCTCACCACGTGAACGATCCGCCGCACCGCCCCCACCCCACCCCCGGGTACCCTGAACCCGACACGCCTTTCCGCCGGTGCTGAGCAACTGATCCATCGGTGTCTCGGATACGTAACGCCGACGGTCAGGCGTGTCACCTTCACCAACCACCTTCCCGACAGTGGTCGAAAACTTGGTTACCGGCCGGTAGAAGCCCAGGTCAGGAAGT # Right flank : CCGACGATCCTGAGTGGTCTGCCCTGCATCCGCGCGATCGACAACCTCAGCGCCACGTGCGGAGACCGGGCCCGACATTCGACGGTTCGCGCACGTAAGTCGCTGAGAATACTGTTGTTTCGTAGACCGCCGATCAAATACCCAGCACCCCAACAACTCTCACCGCGTCGTATACCCACCATTGGCGAAGATCGTCTGTCCCGTGATCCATTTCCCGTCGGTGACGAGGAACTCGATCAGCGGGGCGATGTCGGTGATGTCGGTGAGACGCCCGCCGAGGGCCTGGGACTTGTGGAACTCCACGCGCTCCGGAGTCTCCTGCCCGTAGAAGAACGGGGTGTCCATCGGTCCGGGCGCGACGTTGTTCACCGAGATGCCTCGGGATGCGAATTCCTTGGCGGCGGCGCGGGTGAAGTGCTCGACCGGGCTCTTGGCGCCGGCGTAGGTGGAGTACCCGTCGGTGAACGCGGCGAGCAGCGCGGTGAGCACGGTGACGACGC # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 47776-48228 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBW01000042.1 Nocardia puris NBRC 108233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47776 29 100.0 32 ............................. CTCGCGCGGTCGGCCCACGTGACCTGGAGGAT 47837 29 100.0 32 ............................. TGTTGACCGCGTCGGAGAAGTCGAGCGAGGGT 47898 29 96.6 31 ............................C TGGTCCCAGCCCATCCGTTCGATCGCGCACC 47958 29 100.0 32 ............................. TCGCGGATGAAGTGACCGACGACGACCGCGTG 48019 29 100.0 30 ............................. GACCGGGTCGACCTCGCTGGGGTTGCTGGT 48078 29 100.0 32 ............................. TCAGGTGCGACGGTCACGGTGAGCCTGACGAC 48139 29 96.6 32 ............................T CGAGCATCGTTGATCAATCCTCGGGCGGGCTC 48200 29 96.6 0 ........................G.... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GTGCTCCCCACGCACGTGGGGATGATCCG # Left flank : CGCCCCCTCCCCCGGCACCCCAGCGTCCTCAGCCGCTGCTTCCCACTCGGTCAACGCCAATTCCGAACCCGTCCCGAGTTTGCACCGGACGAAACCCGGAAAGCCTTGGGTCACTTCAGCTCCCAGCGCTGAATAGAACTTTCTCGCGCGATCCACATCCGCGACACCGAGCATGATCACACTCACCTGAATCGCCATATCGCTGCCCTCGCTTCGTGGTTGATCGATTCGTTCGCGACTCCGGATTCGCGCCGGTCTCGATTTTTCCCGCACGGCCATCAACCATGCTTCTCGATTCCTGACCGATCGCGCCCCCGACGCACGCAGACGAGACAGCCGCATATCGACCCAGGGCGTCGACCTGCCTCATCTATCGCTGCCCGGTGTTCGCGTCGCACCGCATGCCCACGCAGCCGCGCATCACTCGACGGCCGACTGAGCCCGTCCCAGGAGTGGTCGAAAAAGTGGTTACCAGCCGGTAGACTGCCTGGTCAGGAAGT # Right flank : GTGCCTAGTCGATGAACGCCGCAGCCGCGGCACACCCAGACCGCAGCATCCGCGGCCGACACCGCCGTAGCGGATGACCACCTGTTGAGTGGGCGCACGATCATGGCGAATACGGCTTGTCCGCATCAGGTTTCAAACCTGCACAAGTTAATTTCGCTGGGCTCGCCCGTCGAAACTGCCGGATGAATCGAATGACACGAGCTCGAACACGACCGAACCATCCACAATCCGATCATCGAAGTCACCGCAACGAAGCCTGGCTCAGCACACGGCGGGCCAATTCCGCTGCGGTTCCCGTAGTCGTATCGACGACCGCGTCATAGGGGTATCCATGATCGTGCACTATGTCGAAATACCCACGCGCCAAACCGATTTCAGTGCGACGACGGGCCAACTCTCGTTGCTCGGCGACAGCGAGGGGACAGTTGACGCAGACCAAGTGAACGCCCAGACCGGCCAGCGCCTCCATCCACATCGGCATAAGATCCGGCGTCAACAGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 49928-50140 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBW01000042.1 Nocardia puris NBRC 108233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 49928 30 90.0 31 ........................G...CT CGCCAAGCTGCGTCGGGGGCTCGGTAAACAG 49989 30 100.0 31 .............................. CGTGAGTGTGCACCAGCCATCGCGCCGCCTC 50050 30 86.7 31 .C............T.........GC.... GCTATCCGATCGGCACCGGCTGGTCGGATCA 50111 30 83.3 0 ........T........A....G.....CA | ========== ====== ====== ====== ============================== =============================== ================== 4 30 90.0 31 GTGCTCCCCACGCACGTGGGGATGATCCGG # Left flank : CCCAGTCCTCACCGAAGCCCGCGACACCCTGTCCCGTTATTACGCAACAGAACTCGGCGAACCGTTCACCACCGCAGGCCTCTGCTACTACCGCGACGGCCGCGACAGCGTCGCCTGGCACGGCGACACCTTCGGCCGCGGCGCCACCCACGACACCATGGTCGCCATCCTCTCCGTCGGCGCACCCCGCACCCTCGCCCTCCGCCCCCGAGGCGGCGGCCCCAGCCTCCGCTTCCCCGTCGGCCACGGCGACCTCCTCGTCATGGGCGGCTCCTGTCAACGCACCTGGGAACACGCGGTACCGAAGACGCGTCGGGCGACTGGGCCACGGATCAGCGTTCAGTTCCGGCCGCGAAACGTCAGGTGAAGCCTCCAGGGCCCGTACAGTTGACGTATGGCGCTCGGCTACGACCGGGCACACTCCGCTATCGGACATCACAACGCGAGCCGGAGTGGTCGAAAAACTGGTTACCCGCCGGTAGAGTGCCTGGTCAGGAAGT # Right flank : AACTTCCCGCGTCCAAGCAGGTCTCAACGAACCCACCGCATCGACGCGGTTCGTTCTACGCCGATTTCGGACGAGCGCATGGACTCTCGGGAGCGAGCAGACGAACATGCAGCACTGTGCTCGTGCCAGTGCTCGGATGCCGATAGGTTGATCAACATGACGCACGCGCTGACTGTCATGCCGCTGCACACCATCACCCAGGTGTTCGGCGAGGATGGCCTGCGCGAGAGGTTCCTTCTCGAAATCGAGGACCTGCCGGATCGTGACCGCCTCACTGACGCTCTGGCCCTCGCCACCGAGCTACACCGCAACGACGGCTACGGCGACGAGCCATACATCAACCACCTCTTGCGCGTCGCGATCCGCATCGCCTCGCACTACGAGGTGCGCGACCCGGACATCGTGATCGCCGGCCTCCTGCACGACTCCGTCGAGGACCACCCCACTGAACTCGCAGGCACCTGCCAGGGCTCACCTACCGAGACCGCGCTCGCCGAACT # Questionable array : NO Score: 3.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGATCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.90,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 52911-53611 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBW01000042.1 Nocardia puris NBRC 108233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 52911 30 93.3 31 .........................C..C. CTGGTGTGCCGATCTCGCACGCGAAGTCCGC 52972 30 100.0 31 .............................. GCAGGTCGCGAACATCCGCGGCCAACTGTCC 53033 30 96.7 31 .............................A GCCTGTGCCCGCCGGTCATCTCCAGTGGACA 53094 30 100.0 31 .............................. GGTCACTTGCTCGGCGGTATCACAATCGACC 53155 30 96.7 31 .............................G CTTGTCACCACCCGCGACTACGCCGAGGTGC 53216 30 100.0 31 .............................. TGACACCGAACTCTCCTGTGATCATTCGTGT 53277 30 96.7 31 .............................T TCGCGAACTGGCGCAGCGTCATCGACGTGAA 53338 30 96.7 31 .............................T GGACAATGCGGCCGATACTGGGCTGGGGCAT 53399 30 93.3 31 ............................CG CGAGGACGGGTTCCCCTACCGCAAGCACGCC 53460 30 93.3 31 ............................CA TGACGCACCCTGTCGTGTCGGTGGCGGCGGG 53521 30 100.0 31 .............................. GGTCCAAGGCCACGAAATGGCCGGGGTGATC 53582 30 86.7 0 .........G................GTC. | ========== ====== ====== ====== ============================== =============================== ================== 12 30 96.1 31 GTGCTCCCCACGCACGTGGGGATGGTCCGC # Left flank : CGACTTGTCATGGCACGCTCCGATGCACGACCTGCTGCGTCGAGCAGTCGCGGAAGGGCTTGGGGAGCAGAGCATTACGGCGCTGATCGAGTTACTGGCCACTTCTCTGGATCGAGAGTCGACTGCACAACTCACCAGTCAGTGAAGTCCGAGATGTCCGCCCGGTGCGGCAGAATGCGCGCTATTGCCGGCGGGGATCCGCGACGTCGAAACCTGTCTGCGTCAGTGCGGCGGATCGACCGGTCGAGCATTCAGCGGTCAGGCGATTAGTCACGGAGGTCGTCCATGTGCGTATCAGTTGCTCGGCCGGGCGAACAGTCAGGATCCCGCAGGCGATCTCGGCTGCCGGTTCGCTAGGACAGGGGCAAGAAGTCGCGCGGACTATCGCCCCACCGTCGCCGTTCACCTACCTCGGCGCTGTCGCACGGCACGCCTCCTCCTCGCCGCACTCAGTGGTCGAAAATCTGGTTACCGACCGGTAGAATGCCTGGTCAGGAAGT # Right flank : CTTCCCGGAGCAGGCCGGGCACGAGGTGGGTCGACCCCCGAATCGTGGGATGACCGTGGTTACAGATGATCAGGCCCAGCCGTCGAGACACTCCCACCGGTGAGAGATGTCAGGCTTGTTGCAGCACAAAGAAATACGGCTCCGCCAGACCTCTCAGGTCCATGACTCCCAGCAGTGTCGCCCCGTCCACCCTGCGGAAATGGTCGATGATCGGCAAGTGATCGTAAACCATTGCGGCACTGACAATTCCCCGGTACTCGATGTTCCGGAGACGCGCCGTCGGCCTGTCGGTGCGCAGCGCTGGGCGCAGGACAGGGAGGAGTTTTCGACCGGCTTGGACGGCGGGTAGCGGAATACGCCCTGCCAGGCTCAGAGGTACGCGTCGGGGATCGACCGGAAACAGGTTGCCCGCGTCGTCGGCGAAGACAAGCGGGTGCACGAAATCGGCGCTGTCGAAACGCTTTCCATACCAGCCACTCGCGGTCAGCACGCCGTCGAGG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14705-14370 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBW01000054.1 Nocardia puris NBRC 108233, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14704 29 100.0 32 ............................. ACGCGACGCGCTCGGCCTGATCTGCCTGGACC 14643 29 100.0 32 ............................. GCCACCCCGATCACCCTGCTGACCGCCGAGTC 14582 29 93.1 32 ............TG............... CCTGTTGTGTCGGCCTTAATTTCGACGCCGAG 14521 29 93.1 32 ...........C.G............... GCGGCGGCCATGAGTTCTTGGGTGGTCCCCTT 14460 29 89.7 33 ...C....................G...T CGGCGTCATGGGCGCGCTGATCGACCCGCTCGG 14398 29 69.0 0 ...C...AGT.........A....GTT.A | ========== ====== ====== ====== ============================= ================================= ================== 6 29 90.8 32 ATGGTCCCCGCGCATGCGGGGATGAGCCC # Left flank : ACACCTACTTCTCCTCCAAGGAACACCTGGTCGCGGAGATCTTCTGGCGCCGCCTGATCGCCTCCCCCTCGCCCGCCAGCGAGGACCCCGACCCCGTGGTCCGCGTCATCGCCGAACTGCGCGACATCGCCCTGCTCGTCGCCGACGAACAAGAACTCTCCGGCGCCGTCACCAGCGCCCTGCTCGGCCGCGACCCCGACGTCGCCCACCTGCGCGACCGCATCGGCGCCGAAATCCGCAAACGCATCCTGCGCGCCCTCGGCCCCGACCCCGACCCCGACATCGTCGAATCCCTCGAACTGCTCTACGCCGGAGCGTTGGTCCGCGCGGGAATGGGCTACGCGTCGTACGCGGAGATCGCCGACCGGATCGAGAAATCGGCGCTGCTGATCTTACGGTGAGGGGATACGGTGGATGTCGCGTCCGGACGCGATGGCCGTGGTCGGACGAAAGTGAATGAGAATCGGCTCAGCTCTGCGAAAAACCGCAGGTCAAGAAGT # Right flank : CGATGCCCCCCCAGCCGGGCGGCGCCGAAGTGCCAGGCGGTCAACCATTTGCAGAGTCGCGATCATCGCCGTTGGTGGAATCCGTGCGACTCCGCCCCGTGAGCGGATTCCGAAGTGTTCGTACCGAAATGGATAGTATCGCGAGCGATAGTATCTCTGGCGATACTATCTCCGGCGGTACTATCCATCCCTACCGTGCCTGTAGCACGTGCTCCCCGCGCCGGCGGGGTTGAGCCTGGGCCGCCGAAGTAGTGCCGGCCATCGGCGTCACGCTCCCCGCGCGTGTGGATCTCCGCATCAGCACCTTGCCCTGGTGGTTCGAAACTGCCCGGTGGGCAGTTGTCGCACGCCCGCGATCGCCGTCGACGGTGGGTGGGCGGCGCGGATGCCCGACCAAGCCGCACTTTGGATGGTCGATCTGGGCGGGAACCCGGTCAGGGGTGGACGTTTGTATAGTTGCAGCAACGATGAAGGCCCGGCGTGGGTAGTGGGGGTGAGCA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGGTCCCCGCGCATGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7715-8233 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBW01000082.1 Nocardia puris NBRC 108233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 7715 30 100.0 31 .............................. AGCACGGGCTGCTCGCCCGCATCCTGCCGGA 7776 30 96.7 31 .............................T CCGTTCCGATGGGGGTGGTGGGTCCCAGTGC 7837 30 96.7 31 .............................G GTCACCTGTACGTCGAACCGCTGATCATCAC 7898 30 100.0 31 .............................. AGGAGGCGTTCAACCTCATCACGTCGTCGGG 7959 30 93.3 31 ............................CG CCTCCAGTTATGCTGTCGCTTGTGTGAGGTC 8020 30 100.0 31 .............................. TGAACATCAGTGAGTCGTCCCAGACGTTGTG 8081 30 90.0 31 .C..........................CC TGGCGACCGGCGCGCACGGAGTGATCCAGGG 8142 30 96.7 31 .............................G AGTGAACGGCGATGCCTGACACCACGACCCG 8203 30 76.7 0 .......T.....T.......CGT...G.G | C [8222] ========== ====== ====== ====== ============================== =============================== ================== 9 30 94.5 31 GTGCTCCCCACGCACGTGGGGATGGTCCGA # Left flank : CCCACCCTCACCCTGATCGAGGTGATGAACCGCGCCAACCTCGACTCCACCCACTCCCTCGACGGCCGCGAAATCACCCTCTCCGGCTTCATCCTGCGCGCCGAACACGGCGACGGCCTCGACCTCGCCCGCGTCGCCATCAGCTGCTGCGTAGCCGACGCCCGCTACGTCCGCCTCCACCTCACCGCCCTCCCCCAACCCCTCCCCGAAGACACCTGGATCGAAGTCCGCGGAACGGTAGTCCCCAACAGCGCCCCCACCGACCCAGAACTGACCCCGACCCTGACAGTCCACGACTTTCGCTTGATCGAGCGACCGGAGAACTCCTACGAACGAATCCGCTGAGTGCGAGAGTCGACCCCATCGAGACTTCGCCAACTCGGCACAATTCACGAACCGCCCCGACGCGTCTCTCACCAGCACCCCGCCCTCCCGGAAGCCGAATCGGAGTAGTGGTCGAAAATAGGGTTACCCACCGGTAGAGTGTCTGGTCAGGAAGT # Right flank : GACGGTACGCAGTCAGTCCGACTCGGATTTGGCGAGTTGGCGCACCACCACGCTCGCGGGGCGGAGGGAGCGGGTGCCGACGGTGAGGCCCGGGGCGATGAGCGCGTCGACGGTGCGGTCTTCGGATGGGTCGGTGGTCGACACCACGTCTGTGGCTTCCATGGTCAGCGAGTCGAACGCTGTTCCGGGGCCCGGGGTGAGGAGGGTGGCGCCGCGGCCGGTGAGGAGGCGCTCGATGCGGGTGGTCACGGCGTCGAAGGCGGCGCGTTCGCGCTCGGATTCGGCGGTGGCGGCGCAGGCCGAAGTGTCGCCGTGGAGGGCGAAGAGCTCCACAACCAAGGGCAGGTCCGCCCCCGCGCGGTCGCGGCGGTCGCGCTCCTTCGCCTCGTCGGCCAGGCGGTCGAGGGTGGCGGCTTGGCGGGTGACCACGCGGGTCAGGTCCTCGACGCGTTCGGCGAGTTGGGCGAGGGTCTGCTCGACGGGATCGGTCATAGGCGCAC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //